mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | ||||||
|---|---|---|---|---|---|---|
| evidence | position | mutation | freq | annotation | gene | description |
| RA | 19,009 | C→T | 19.4% | S222F (TCC→TTC) | yybT → | DHH subfamily phosphodiesterase |
| RA | 35,814 | Δ1 bp | 24.8% | intergenic (+45/+63) | rlmH → / ← tpn | hypothetical protein/IS431mec transposase |
| RA | 35,817 | A→T | 26.2% | intergenic (+48/+60) | rlmH → / ← tpn | hypothetical protein/IS431mec transposase |
| RA | 35,850 | C→T | 28.5% | intergenic (+81/+27) | rlmH → / ← tpn | hypothetical protein/IS431mec transposase |
| RA | 35,858 | T→A | 30.9% | intergenic (+89/+19) | rlmH → / ← tpn | hypothetical protein/IS431mec transposase |
| RA | 35,876 | C→T | 38.1% | intergenic (+107/+1) | rlmH → / ← tpn | hypothetical protein/IS431mec transposase |
| RA | 35,913 | C→G | 22.1% | S213S (TCG→TCC) | tpn ← | IS431mec transposase |
| RA | 35,940 | G→A | 26.9% | R204R (CGC→CGT) | tpn ← | IS431mec transposase |
| RA | 35,970 | T→C | 53.6% | E194E (GAA→GAG) | tpn ← | IS431mec transposase |
| RA | 35,997 | T→C | 28.0% | T185T (ACA→ACG) | tpn ← | IS431mec transposase |
| RA | 36,015 | C→T | 27.8% | R179R (AGG→AGA) | tpn ← | IS431mec transposase |
| RA | 36,087 | A→G | 58.2% | C155C (TGT→TGC) | tpn ← | IS431mec transposase |
| RA | 36,119 | C→T | 26.7% | V145I (GTA→ATA) | tpn ← | IS431mec transposase |
| RA | 36,124 | G→A | 56.0% | A143V (GCT→GTT) | tpn ← | IS431mec transposase |
| RA | 36,133 | A→G | 28.9% | V140A (GTA→GCA) | tpn ← | IS431mec transposase |
| RA | 36,161 | T→C | 30.1% | I131V (ATT→GTT) | tpn ← | IS431mec transposase |
| RA | 36,174 | T→C | 31.3% | K126K (AAA→AAG) | tpn ← | IS431mec transposase |
| RA | 36,269 | C→T | 52.9% | A95T (GCA→ACA) | tpn ← | IS431mec transposase |
| RA | 36,315 | G→A | 54.6% | Y79Y (TAC→TAT) | tpn ← | IS431mec transposase |
| RA | 36,378 | C→T | 81.8% | L58L (TTG→TTA) | tpn ← | IS431mec transposase |
| RA | 36,413 | C→T | 53.3% | V47I (GTC→ATC) | tpn ← | IS431mec transposase |
| RA | 36,444 | C→T | 39.2% | R36R (AGG→AGA) | tpn ← | IS431mec transposase |
| RA | 36,471 | A→G | 10.9% | S27S (AGT→AGC) | tpn ← | IS431mec transposase |
| RA | 36,479 | T→C | 9.0% | T25A (ACA→GCA) | tpn ← | IS431mec transposase |
| RA | 36,581 | C→T | 20.7% | intergenic (‑30/‑493) | tpn ← / → USA300HOU_0028 | IS431mec transposase/hypothetical protein |
| RA | 39,653 | C→A | 7.9% | S494I (AGT→ATT) | mecA ← | penicillin binding protein 2 prime |
| RA | 76,180 | C→T | 13.3% | intergenic (+238/‑896) | USA300HOU_0072 → / → USA300HOU_0075 | universal stress protein/lysophospholipase |
| RA | 76,265 | C→T | 27.7% | intergenic (+323/‑811) | USA300HOU_0072 → / → USA300HOU_0075 | universal stress protein/lysophospholipase |
| RA | 76,295 | T→C | 51.4% | intergenic (+353/‑781) | USA300HOU_0072 → / → USA300HOU_0075 | universal stress protein/lysophospholipase |
| RA | 76,322 | G→A | 51.0% | intergenic (+380/‑754) | USA300HOU_0072 → / → USA300HOU_0075 | universal stress protein/lysophospholipase |
| RA | 76,353 | G→A | 45.1% | intergenic (+411/‑723) | USA300HOU_0072 → / → USA300HOU_0075 | universal stress protein/lysophospholipase |
| RA | 76,969 | G→A | 92.2% | intergenic (+1027/‑107) | USA300HOU_0072 → / → USA300HOU_0075 | universal stress protein/lysophospholipase |
| RA | 79,449 | T→G | 5.1% | intergenic (+58/‑202) | USA300HOU_0076 → / → USA300HOU_0077 | transposase/possible S‑adenosyl‑L‑methionine‑dependent methyltransferase |
| RA | 110,651 | C→T | 16.8% | D170D (GAC→GAT) | USA300HOU_0109 → | staphylococcal tandem lipoprotein |
| RA | 110,660 | T→A | 23.4% | I173I (ATT→ATA) | USA300HOU_0109 → | staphylococcal tandem lipoprotein |
| RA | 111,512 | A→G | 38.2% | S194S (TCA→TCG) | USA300HOU_0110 → | possible staphylococcal tandem lipoprotein |
| RA | 111,516 | C→A | 36.8% | Q196K (CAA→AAA) | USA300HOU_0110 → | possible staphylococcal tandem lipoprotein |
| RA | 111,560 | T→C | 13.7% | R210R (CGT→CGC) | USA300HOU_0110 → | possible staphylococcal tandem lipoprotein |
| RA | 119,853 | C→A | 8.7% | G254W (GGG→TGG) | yjbB ← | possible PnaS family phosphate:sodium (Na+) symporter |
| RA | 125,664 | G→T | 5.3% | R71I (AGA→ATA) | USA300HOU_0120 → | hypothetical membrane protein |
| RA | 195,286 | T→A | 86.5% | intergenic (‑97/‑82) | USA300HOU_0183 ← / → USA300HOU_0184 | hypothetical protein/hypothetical protein |
| RA | 217,036 | T→A | 5.3% | intergenic (‑203/+23) | argD ← / ← brnQ | ornithine‑‑oxo‑acid transaminase/possible LIVCS family branched chain amino acid:cation symporter |
| RA | 284,238 | G→T | 6.1% | H463N (CAT→AAT) | ptsG ← | PTS family glucose/glucoside (glc) porter component IIABC |
| RA | 330,730 | T→C | 5.2% | intergenic (+21/‑63) | esxA → / → esaA | ESAT‑6 family virulence protein/virulence protein EsaA |
| RA | 396,540 | G→A | 87.8% | A208T (GCA→ACA) | USA300HOU_0364 → | possible lipoprotein |
| RA | 478,502 | C→A | 13.8% | D342E (GAC→GAA) | ndhF → | NADH dehydrogenase (ubiquinone) |
| RA | 512,643 | A→G | 49.6% | intergenic (+711/‑150) | recR → / → rrs1 | recombination protein RecR/16S ribosomal RNA |
| RA | 536,916 | T→G | 7.0% | intergenic (+109/‑202) | rplY → / → pth | ribosomal protein L25/aminoacyl‑tRNA hydrolase |
| RA | 536,920 | T→A | 5.9% | intergenic (+113/‑198) | rplY → / → pth | ribosomal protein L25/aminoacyl‑tRNA hydrolase |
| RA | 536,921 | T→A | 6.0% | intergenic (+114/‑197) | rplY → / → pth | ribosomal protein L25/aminoacyl‑tRNA hydrolase |
| RA | 536,922 | T→A | 6.0% | intergenic (+115/‑196) | rplY → / → pth | ribosomal protein L25/aminoacyl‑tRNA hydrolase |
| RA | 536,926 | C→A | 6.0% | intergenic (+119/‑192) | rplY → / → pth | ribosomal protein L25/aminoacyl‑tRNA hydrolase |
| RA | 575,701 | T→C | 5.9% | I193I (ATT→ATC) | gltX → | glutamate‑‑tRNA ligase |
| RA | 596,093 | T→G | 6.7% | intergenic (+1247/‑1174) | rpsG → / → tufA | ribosomal protein S7/elongation factor EF1A |
| RA | 607,884 | G→A | 91.2% | R209* (CGA→TGA) | dck ← | deoxynucleoside kinase |
| RA | 622,536 | G→A | 13.3% | S1033S (TCG→TCA) | sdrE → | Ser‑Asp rich fibrinogen/bone sialoprotein‑binding protein SdrE |
| RA | 629,681 | C→A | 89.5% | L84I (CTA→ATA) | hxlA → | possible 3‑hexulose‑6‑phosphate synthase |
| RA | 665,392 | T→G | 86.6% | L79* (TTA→TGA) | iolS → | possible acetytransferase |
| RA | 707,909 | A→T | 6.4% | M1M (TTG→ATG) † | mntB ← | ABC superfamily ATP binding cassette transporter, ABC protein |
| RA | 707,910 | A→G | 88.5% | intergenic (‑1/‑121) | mntB ← / → sirR | ABC superfamily ATP binding cassette transporter, ABC protein/possible metal‑dependent transcriptional regulator |
| RA | 798,594 | T→C | 5.8% | L181L (TTA→CTA) | recQ → | possible glycine betaine/carnitine/choline ABC superfamily ATP binding cassette transporter, membrane protein |
| RA | 849,656 | G→A | 9.3% | G261D (GGT→GAT) | yvcJ → | ATP‑binding protein |
| RA | 895,932 | G→A | 7.1% | intergenic (+131/+12) | metQ → / ← USA300HOU_0850 | ABC superfamily ATP binding cassette transporter, binding protein/integrase |
| RA | 895,935 | T→C | 8.2% | intergenic (+134/+9) | metQ → / ← USA300HOU_0850 | ABC superfamily ATP binding cassette transporter, binding protein/integrase |
| RA | 927,909 | G→A | 7.0% | intergenic (+129/‑128) | gyaR → / → USA300HOU_0891 | dehydrogenase/hypothetical protein |
| RA | 1,002,200 | T→G | 15.4% | M173R (ATG→AGG) | mecA2 → | competence negative regulator MecA |
| RA | 1,041,405 | T→C | 7.0% | V39V (GTT→GTC) | USA300HOU_0984 → | glycosyltransferase |
| RA | 1,113,885 | T→A | 7.4% | F78L (TTT→TTA) | USA300HOU_1045 → | hypothetical membrane protein |
| RA | 1,166,794 | T→C | 6.0% | F139F (TTT→TTC) | USA300HOU_1093 → | hypothetical membrane protein |
| RA | 1,231,411 | A→G | 9.0% | D19G (GAT→GGT) | prpC → | possible PP2C protein phosphatase |
| RA | 1,233,504 | T→A | 100% | V470D (GTT→GAT) | prkC → | non‑specific serine/threonine protein kinase |
| RA | 1,299,770 | T→A | 9.5% | P477P (CCT→CCA) | rnjB → | beta‑lactamase |
| RA | 1,333,059 | G→T | 10.5% | Q144K (CAA→AAA) | bsaA ← | glutathione peroxidase |
| RA | 1,416,458 | A→T | 100% | I216N (ATT→AAT) | oppD ← | oligopeptide ABC superfamily ATP binding cassette transporter, ABC protein |
| RA | 1,440,085 | G→T | 100% | intergenic (‑45/‑891) | cspA ← / → xpaC | cold shock protein CspA/5‑bromo‑4‑chloroindolyl phosphate hydrolysis protein XpaC |
| RA | 1,454,883 | A→G | 7.0% | I226I (ATT→ATC) | arlS ← | sensor histidine kinase |
| RA | 1,513,930 | A→T | 100% | L413F (TTA→TTT) | USA300HOU_1379 → | hypothetical membrane protein |
| RA | 1,646,189 | G→C | 100% | A155G (GCA→GGA) | pepP ← | M24B family Xaa‑Pro dipeptidase |
| RA | 1,717,370 | A→G | 5.6% | V140A (GTT→GCT) | greA ← | elongation factor GreA |
| RA | 1,744,362 | G→A | 86.8% | H104Y (CAC→TAC) | apt ← | adenine phosphoribosyltransferase |
| RA | 1,761,889 | C→A | 87.2% | D388Y (GAT→TAT) | folC ← | tetrahydrofolate synthase |
| RA | 1,799,877 | T→A | 7.6% | G91G (GGA→GGT) | icd ← | isocitrate dehydrogenase (NADP(+)) |
| RA | 1,894,258 | T→C | 6.9% | N19S (AAT→AGT) | USA300HOU_1755 ← | lysophospholipase |
| RA | 1,929,796 | T→C | 25.8% | intergenic (‑879/‑289) | USA300HOU_1794 ← / → USA300HOU_1796 | hypothetical protein/hypothetical protein |
| RA | 1,929,797 | G→A | 25.2% | intergenic (‑880/‑288) | USA300HOU_1794 ← / → USA300HOU_1796 | hypothetical protein/hypothetical protein |
| RA | 1,929,799 | C→A | 25.1% | intergenic (‑882/‑286) | USA300HOU_1794 ← / → USA300HOU_1796 | hypothetical protein/hypothetical protein |
| RA | 1,929,804 | A→G | 26.7% | intergenic (‑887/‑281) | USA300HOU_1794 ← / → USA300HOU_1796 | hypothetical protein/hypothetical protein |
| RA | 1,929,812 | G→A | 31.2% | intergenic (‑895/‑273) | USA300HOU_1794 ← / → USA300HOU_1796 | hypothetical protein/hypothetical protein |
| RA | 1,929,843 | Δ1 bp | 39.4% | intergenic (‑926/‑242) | USA300HOU_1794 ← / → USA300HOU_1796 | hypothetical protein/hypothetical protein |
| RA | 1,929,848 | C→A | 39.6% | intergenic (‑931/‑237) | USA300HOU_1794 ← / → USA300HOU_1796 | hypothetical protein/hypothetical protein |
| RA | 1,929,861 | T→C | 42.2% | intergenic (‑944/‑224) | USA300HOU_1794 ← / → USA300HOU_1796 | hypothetical protein/hypothetical protein |
| RA | 1,929,862:1 | +T | 33.8% | intergenic (‑945/‑223) | USA300HOU_1794 ← / → USA300HOU_1796 | hypothetical protein/hypothetical protein |
| RA | 1,929,864 | A→T | 7.6% | intergenic (‑947/‑221) | USA300HOU_1794 ← / → USA300HOU_1796 | hypothetical protein/hypothetical protein |
| RA | 1,929,865 | A→C | 33.9% | intergenic (‑948/‑220) | USA300HOU_1794 ← / → USA300HOU_1796 | hypothetical protein/hypothetical protein |
| RA | 1,929,866 | G→T | 40.8% | intergenic (‑949/‑219) | USA300HOU_1794 ← / → USA300HOU_1796 | hypothetical protein/hypothetical protein |
| RA | 1,929,867 | G→T | 42.0% | intergenic (‑950/‑218) | USA300HOU_1794 ← / → USA300HOU_1796 | hypothetical protein/hypothetical protein |
| RA | 1,929,870 | A→C | 42.3% | intergenic (‑953/‑215) | USA300HOU_1794 ← / → USA300HOU_1796 | hypothetical protein/hypothetical protein |
| RA | 1,929,872 | G→A | 42.5% | intergenic (‑955/‑213) | USA300HOU_1794 ← / → USA300HOU_1796 | hypothetical protein/hypothetical protein |
| RA | 1,929,873 | C→A | 41.3% | intergenic (‑956/‑212) | USA300HOU_1794 ← / → USA300HOU_1796 | hypothetical protein/hypothetical protein |
| RA | 1,929,875 | T→C | 43.0% | intergenic (‑958/‑210) | USA300HOU_1794 ← / → USA300HOU_1796 | hypothetical protein/hypothetical protein |
| RA | 1,929,917 | C→T | 30.1% | intergenic (‑1000/‑168) | USA300HOU_1794 ← / → USA300HOU_1796 | hypothetical protein/hypothetical protein |
| RA | 1,929,918 | A→G | 30.2% | intergenic (‑1001/‑167) | USA300HOU_1794 ← / → USA300HOU_1796 | hypothetical protein/hypothetical protein |
| RA | 1,929,925 | T→A | 30.3% | intergenic (‑1008/‑160) | USA300HOU_1794 ← / → USA300HOU_1796 | hypothetical protein/hypothetical protein |
| RA | 1,929,928 | T→A | 30.2% | intergenic (‑1011/‑157) | USA300HOU_1794 ← / → USA300HOU_1796 | hypothetical protein/hypothetical protein |
| RA | 1,929,930 | T→A | 30.3% | intergenic (‑1013/‑155) | USA300HOU_1794 ← / → USA300HOU_1796 | hypothetical protein/hypothetical protein |
| RA | 1,929,941 | A→T | 25.7% | intergenic (‑1024/‑144) | USA300HOU_1794 ← / → USA300HOU_1796 | hypothetical protein/hypothetical protein |
| RA | 1,929,946 | G→A | 22.4% | intergenic (‑1029/‑139) | USA300HOU_1794 ← / → USA300HOU_1796 | hypothetical protein/hypothetical protein |
| RA | 1,934,773 | T→A | 6.8% | K159* (AAA→TAA) | USA300HOU_1798 ← | hypothetical protein |
| RA | 1,934,780 | A→T | 14.3% | N156K (AAT→AAA) | USA300HOU_1798 ← | hypothetical protein |
| RA | 1,963,768 | C→G | 100% | V365L (GTA→CTA) | hemG ← | protoporphyrinogen oxidase |
| RA | 2,001,669 | T→C | 6.0% | noncoding (14/76 nt) | USA300HOU_t0051 ← | tRNA‑Ala |
| RA | 2,004,879 | A→G | 7.5% | L259S (TTG→TCG) | pdxB ← | D‑3‑phosphoglycerate dehydrogenase |
| RA | 2,010,363 | C→T | 100% | C146Y (TGT→TAT) | ygaD ← | ABC superfamily ATP binding cassette transporter, membrane protein |
| RA | 2,027,805 | C→A | 10.6% | V48F (GTT→TTT) | vraS ← | sensor histidine kinase VraS |
| RA | 2,046,823 | T→C | 10.3% | intergenic (+31/+58) | putP → / ← camS | SSS family solute:sodium (Na+)/proline symporter/pheromone lipoprotein CamS |
| RA | 2,046,831 | A→G | 11.8% | intergenic (+39/+50) | putP → / ← camS | SSS family solute:sodium (Na+)/proline symporter/pheromone lipoprotein CamS |
| RA | 2,046,835 | A→T | 13.0% | intergenic (+43/+46) | putP → / ← camS | SSS family solute:sodium (Na+)/proline symporter/pheromone lipoprotein CamS |
| RA | 2,046,840 | A→T | 13.0% | intergenic (+48/+41) | putP → / ← camS | SSS family solute:sodium (Na+)/proline symporter/pheromone lipoprotein CamS |
| RA | 2,046,844 | C→T | 12.8% | intergenic (+52/+37) | putP → / ← camS | SSS family solute:sodium (Na+)/proline symporter/pheromone lipoprotein CamS |
| RA | 2,046,852 | G→A | 9.7% | intergenic (+60/+29) | putP → / ← camS | SSS family solute:sodium (Na+)/proline symporter/pheromone lipoprotein CamS |
| RA | 2,119,307 | C→T | 5.3% | T313T (ACG→ACA) | USA300HOU_1992 ← | hypothetical protein |
| RA | 2,119,316 | G→A | 5.3% | N310N (AAC→AAT) | USA300HOU_1992 ← | hypothetical protein |
| RA | 2,119,319 | T→C | 5.2% | A309A (GCA→GCG) | USA300HOU_1992 ← | hypothetical protein |
| RA | 2,129,388 | C→T | 6.7% | intergenic (+1102/+17) | int → / ← hlgB | bacteriophage integrase/possible leukocidin subunit |
| RA | 2,243,494 | A→T | 8.9% | intergenic (+72/+37) | USA300HOU_2114 → / ← pyrG | hypothetical protein/CTP synthase |
| RA | 2,243,499 | T→A | 10.2% | intergenic (+77/+32) | USA300HOU_2114 → / ← pyrG | hypothetical protein/CTP synthase |
| RA | 2,268,558:1 | +A | 6.9% | intergenic (‑446/+92) | USA300HOU_2142 ← / ← USA300HOU_2143 | hypothetical protein/possible HAD superfamily hydrolase |
| RA | 2,268,562 | A→T | 7.3% | intergenic (‑450/+88) | USA300HOU_2142 ← / ← USA300HOU_2143 | hypothetical protein/possible HAD superfamily hydrolase |
| RA | 2,268,563 | C→T | 7.3% | intergenic (‑451/+87) | USA300HOU_2142 ← / ← USA300HOU_2143 | hypothetical protein/possible HAD superfamily hydrolase |
| RA | 2,268,572 | A→T | 10.7% | intergenic (‑460/+78) | USA300HOU_2142 ← / ← USA300HOU_2143 | hypothetical protein/possible HAD superfamily hydrolase |
| RA | 2,279,705 | G→A | 100% | intergenic (+1373/+6659) | mtlD → / ← glmM | mannitol‑1‑phosphate 5‑dehydrogenase/phosphoglucosamine mutase |
| RA | 2,304,131 | A→C | 6.3% | G336G (GGT→GGG) | USA300HOU_2162 ← | UTP‑‑glucose‑1‑phosphate uridylyltransferase |
| RA | 2,352,815 | G→A | 85.9% | A92V (GCA→GTA) | rpsI ← | ribosomal protein S9 |
| RA | 2,371,339 | C→T | 6.4% | intergenic (‑4456/+1102) | rpmC ← / ← pbuG | ribosomal protein L29/NCS2 family nucleobase:cation symporter‑2 |
| RA | 2,386,433 | A→G | 8.2% | I9I (ATT→ATC) | USA300HOU_2245 ← | hypothetical protein |
| RA | 2,454,626 | A→T | 100% | L48L (CTA→CTT) | USA300HOU_2315 → | hypothetical membrane protein |
| RA | 2,455,692 | Δ1 bp | 10.4% | coding (1210/1260 nt) | USA300HOU_2315 → | hypothetical membrane protein |
| RA | 2,455,699 | A→T | 12.4% | H406L (CAT→CTT) | USA300HOU_2315 → | hypothetical membrane protein |
| RA | 2,513,975 | C→T | 5.7% | R54Q (CGA→CAA) | nreA ← | hypothetical protein |
| RA | 2,519,942 | C→A | 6.7% | W230C (TGG→TGT) | narG ← | nitrate reductase alpha subunit |
| RA | 2,519,951 | T→G | 12.8% | P227P (CCA→CCC) | narG ← | nitrate reductase alpha subunit |
| RA | 2,532,298 | A→T | 100% | T15T (ACA→ACT) | murN → | FemAB family peptidoglycan biosynthesis protein |
| RA | 2,559,840 | T→G | 8.2% | intergenic (+34/+89) | bcr → / ← USA300HOU_2421 | MFS family major facilitator transporter, bicyclomycin:cation symporter/hypothetical protein |
| RA | 2,559,841 | C→A | 8.5% | intergenic (+35/+88) | bcr → / ← USA300HOU_2421 | MFS family major facilitator transporter, bicyclomycin:cation symporter/hypothetical protein |
| RA | 2,575,054 | T→G | 5.5% | A117A (GCA→GCC) | opuBC ← | glycine betaine/L‑proline ABC superfamily ATP binding cassette transporter, binding protein |
| RA | 2,582,141 | Δ1 bp | 5.3% | coding (1169/1353 nt) | pnbA → | carboxylesterase |
| RA | 2,608,825 | A→T | 6.2% | intergenic (‑676/+154) | USA300HOU_2470 ← / ← USA300HOU_2471 | dehydrogenase/hypothetical protein |
| RA | 2,615,837 | C→T | 7.6% | V666V (GTG→GTA) | USA300HOU_2480 ← | helicase |
| RA | 2,628,276 | T→C | 6.0% | intergenic (+146/+65) | sarU → / ← galU | staphylococcal accessory regulator U/UTP‑‑glucose‑1‑phosphate uridylyltransferase |
| RA | 2,655,403 | T→C | 5.3% | N38S (AAT→AGT) | yahD ← | possible hydrolase |
| RA | 2,821,539 | T→C | 5.1% | L73L (TTA→TTG) | ywrF ← | hypothetical protein |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP000730 | 37094 = | 73 (1.120) | 6 (0.100) | 5/238 | NT | 8.3% | coding (21/231 nt) | USA300HOU_0028 | hypothetical protein |
| ? | CP000730 | 37188 = | 65 (1.080) | coding (115/231 nt) | USA300HOU_0028 | hypothetical protein | |||||
| * | ? | CP000730 | 52489 = | 64 (0.980) | 22 (0.380) | 3/228 | NT | 24.9% | intergenic (+99/‑574) | USA300HOU_0043/USA300HOU_0044 | hypothetical membrane protein/possible transcriptional regulator |
| ? | CP000730 | = 52983 | 76 (1.320) | intergenic (+593/‑80) | USA300HOU_0043/USA300HOU_0044 | hypothetical membrane protein/possible transcriptional regulator | |||||
| * | ? | CP000730 | = 52543 | 38 (0.580) | 3 (0.050) | 3/242 | NT | 7.8% | intergenic (+153/‑520) | USA300HOU_0043/USA300HOU_0044 | hypothetical membrane protein/possible transcriptional regulator |
| ? | CP000730 | = 52645 | NA (NA) | intergenic (+255/‑418) | USA300HOU_0043/USA300HOU_0044 | hypothetical membrane protein/possible transcriptional regulator | |||||
| * | ? | CP000730 | 57551 = | 62 (0.950) | 5 (0.080) | 4/242 | NT | 8.6% | coding (618/621 nt) | USA300HOU_0048 | hypothetical membrane protein |
| ? | CP000730 | 57600 = | 48 (0.780) | intergenic (+46/+871) | USA300HOU_0048/USA300HOU_0049 | hypothetical membrane protein/hypothetical protein | |||||
| * | ? | CP000730 | 190272 = | 64 (0.980) | 3 (0.050) | 3/244 | NT | 5.1% | coding (824/1176 nt) | cap5P | capsular polysaccharide biosynthesis protein Cap5P |
| ? | CP000730 | 190304 = | 52 (0.840) | coding (856/1176 nt) | cap5P | capsular polysaccharide biosynthesis protein Cap5P | |||||
| * | ? | CP000730 | = 329211 | 51 (0.780) | 5 (0.080) | 4/238 | NT | 8.8% | intergenic (+79/+64) | USA300HOU_0295/USA300HOU_0296 | hypothetical membrane protein/hypothetical protein |
| ? | CP000730 | = 329244 | 57 (0.950) | intergenic (+112/+31) | USA300HOU_0295/USA300HOU_0296 | hypothetical membrane protein/hypothetical protein | |||||
| * | ? | CP000730 | = 368778 | 64 (0.980) | 6 (0.100) | 3/248 | NT | 9.5% | intergenic (+212/+66) | nagC/USA300HOU_0337 | possible transcriptional regulator/possible RpiR family transcriptional regulator |
| ? | CP000730 | = 368819 | 53 (0.850) | intergenic (+253/+25) | nagC/USA300HOU_0337 | possible transcriptional regulator/possible RpiR family transcriptional regulator | |||||
| * | ? | CP000730 | 370467 = | 60 (0.920) | 4 (0.070) | 4/234 | NT | 7.7% | intergenic (+15/+112) | nanE/USA300HOU_0339 | N‑acylglucosamine‑6‑phosphate 2‑epimerase/hypothetical membrane protein |
| ? | CP000730 | 370547 = | 41 (0.690) | intergenic (+95/+32) | nanE/USA300HOU_0339 | N‑acylglucosamine‑6‑phosphate 2‑epimerase/hypothetical membrane protein | |||||
| * | ? | CP000730 | = 407101 | 66 (1.010) | 4 (0.070) | 4/234 | NT | 5.6% | intergenic (+16/+67) | atoB/USA300HOU_0376 | acetyl‑CoA C‑acetyltransferase/hypothetical protein |
| ? | CP000730 | = 407127 | 76 (1.280) | intergenic (+42/+41) | atoB/USA300HOU_0376 | acetyl‑CoA C‑acetyltransferase/hypothetical protein | |||||
| * | ? | CP000730 | 512620 = | 64 (0.980) | 63 (1.400) +40 bp |
43/178 | NT | 58.8% | intergenic (+688/‑173) | recR/rrs1 | recombination protein RecR/16S ribosomal RNA |
| ? | CP000730 | 1998278 = | NA (NA) | intergenic (‑6/+5) | USA300HOU_t0050/rrf4 | tRNA‑Val/5S ribosomal RNA | |||||
| * | ? | CP000730 | = 513898 | NA (NA) | 4 (0.060) | 4/248 | NT | NA | noncoding (1106/1540 nt) | rrs1 | 16S ribosomal RNA |
| ? | CP000730 | = 513918 | NA (NA) | noncoding (1126/1540 nt) | rrs1 | 16S ribosomal RNA | |||||
| * | ? | CP000730 | 599691 = | 55 (0.840) | 4 (0.070) | 3/240 | NT | 7.0% | coding (218/1176 nt) | yhaA | M20D subfamily peptidase |
| ? | CP000730 | 599743 = | 55 (0.910) | coding (166/1176 nt) | yhaA | M20D subfamily peptidase | |||||
| * | ? | CP000730 | 720538 = | 78 (1.200) | 4 (0.060) | 4/246 | NT | 5.3% | intergenic (+148/‑107) | nupC2/USA300HOU_0666 | CNT family concentrative nucleoside transporter/hypothetical protein |
| ? | CP000730 | 720578 = | 70 (1.130) | intergenic (+188/‑67) | nupC2/USA300HOU_0666 | CNT family concentrative nucleoside transporter/hypothetical protein | |||||
| * | ? | CP000730 | = 800994 | 47 (0.720) | 5 (0.080) | 3/244 | NT | 9.5% | intergenic (+128/‑223) | hisC1/USA300HOU_0748 | histidinol‑phosphate transaminase/hypothetical protein |
| ? | CP000730 | = 801032 | 51 (0.830) | intergenic (+166/‑185) | hisC1/USA300HOU_0748 | histidinol‑phosphate transaminase/hypothetical protein | |||||
| * | ? | CP000730 | = 885389 | 59 (0.900) | 4 (0.070) | 4/232 | NT | 6.7% | intergenic (+18/+55) | gpmA1/yisU | phosphoglycerate mutase/LysE family L‑lysine exporter |
| ? | CP000730 | = 885408 | 58 (0.990) | intergenic (+37/+36) | gpmA1/yisU | phosphoglycerate mutase/LysE family L‑lysine exporter | |||||
| * | ? | CP000730 | 917316 = | 67 (1.030) | 3 (0.050) | 4/236 | NT | 5.2% | intergenic (+75/‑115) | sufB/USA300HOU_0876 | ABC superfamily ATP binding cassette transporter, membrane protein/hypothetical protein |
| ? | CP000730 | 917342 = | 48 (0.800) | intergenic (+101/‑89) | sufB/USA300HOU_0876 | ABC superfamily ATP binding cassette transporter, membrane protein/hypothetical protein | |||||
| * | ? | CP000730 | = 920390 | 46 (0.710) | 3 (0.050) | 3/230 | NT | 5.9% | coding (39/135 nt) | USA300HOU_0880 | hypothetical protein |
| ? | CP000730 | = 920428 | 55 (0.950) | coding (1/135 nt) | USA300HOU_0880 | hypothetical protein | |||||
| * | ? | CP000730 | = 940821 | 60 (0.920) | 3 (0.050) | 3/246 | NT | 5.1% | intergenic (+2/+54) | comA/USA300HOU_0905 | hypothetical protein/hypothetical protein |
| ? | CP000730 | = 940872 | 55 (0.880) | intergenic (+53/+3) | comA/USA300HOU_0905 | hypothetical protein/hypothetical protein | |||||
| * | ? | CP000730 | = 961264 | 50 (0.770) | 3 (0.050) | 3/246 | NT | 6.0% | coding (84/525 nt) | spsA | Sec family Type I general secretory pathway S26 family signal peptidase I |
| ? | CP000730 | = 961290 | 47 (0.760) | coding (110/525 nt) | spsA | Sec family Type I general secretory pathway S26 family signal peptidase I | |||||
| * | ? | CP000730 | = 1117307 | 39 (0.600) | 4 (0.070) | 4/228 | NT | 9.9% | intergenic (+3093/‑427) | USA300HOU_1046/typA | hypothetical protein/GTP‑binding protein TypA |
| ? | CP000730 | = 1117325 | 38 (0.660) | intergenic (+3111/‑409) | USA300HOU_1046/typA | hypothetical protein/GTP‑binding protein TypA | |||||
| * | ? | CP000730 | 1203821 = | 61 (0.940) | 3 (0.050) | 3/238 | NT | 5.3% | intergenic (+44/‑246) | ileS/yfiE | isoleucine‑‑tRNA ligase/possible lactoylglutathione lyase |
| ? | CP000730 | 1203868 = | 51 (0.850) | intergenic (+91/‑199) | ileS/yfiE | isoleucine‑‑tRNA ligase/possible lactoylglutathione lyase | |||||
| * | ? | CP000730 | 1217678 = | 51 (0.780) | 3 (0.050) | 3/226 | NT | 6.9% | intergenic (+7/‑430) | USA300HOU_1144/USA300HOU_1145 | hypothetical protein/possible 3‑demethylubiquinone‑9 3‑methyltransferase |
| ? | CP000730 | 1217746 = | 36 (0.630) | intergenic (+75/‑362) | USA300HOU_1144/USA300HOU_1145 | hypothetical protein/possible 3‑demethylubiquinone‑9 3‑methyltransferase | |||||
| * | ? | CP000730 | 1218705 = | 73 (1.120) | 8 (0.140) | 5/228 | NT | 11.3% | intergenic (+196/+67) | USA300HOU_1145/fbpA | possible 3‑demethylubiquinone‑9 3‑methyltransferase/fibrinogen‑binding protein |
| ? | CP000730 | 1218759 = | 61 (1.060) | intergenic (+250/+13) | USA300HOU_1145/fbpA | possible 3‑demethylubiquinone‑9 3‑methyltransferase/fibrinogen‑binding protein | |||||
| * | ? | CP000730 | = 1283492 | 42 (0.640) | 3 (0.050) | 3/236 | NT | 6.8% | coding (51/4311 nt) | dnaE1 | DNA‑directed DNA polymerase III alpha subunit |
| ? | CP000730 | = 1283506 | 44 (0.740) | coding (65/4311 nt) | dnaE1 | DNA‑directed DNA polymerase III alpha subunit | |||||
| * | ? | CP000730 | = 1332949 | 42 (0.640) | 3 (0.050) | 3/222 | NT | 6.9% | intergenic (+159/+63) | hfq/bsaA | host factor‑I protein Hfq/glutathione peroxidase |
| ? | CP000730 | = 1332971 | 45 (0.800) | intergenic (+181/+41) | hfq/bsaA | host factor‑I protein Hfq/glutathione peroxidase | |||||
| * | ? | CP000730 | = 1336678 | 48 (0.740) | 3 (0.050) | 3/240 | NT | 6.2% | coding (341/369 nt) | glnR | glutamate‑‑ammonia ligase repressor |
| ? | CP000730 | = 1336691 | 46 (0.760) | coding (354/369 nt) | glnR | glutamate‑‑ammonia ligase repressor | |||||
| * | ? | CP000730 | 1373632 = | 57 (0.870) | 3 (0.050) | 3/236 | NT | 5.7% | intergenic (+653/‑1242) | yneF/sbcC | hypothetical protein/exodeoxyribonuclease SbcC |
| ? | CP000730 | 1373681 = | 47 (0.790) | intergenic (+702/‑1193) | yneF/sbcC | hypothetical protein/exodeoxyribonuclease SbcC | |||||
| * | ? | CP000730 | 1481792 = | 50 (0.770) | 3 (0.050) | 3/242 | NT | 6.2% | coding (20232/31266 nt) | ebh | extracellular matrix binding protein |
| ? | CP000730 | 1481833 = | 44 (0.720) | coding (20191/31266 nt) | ebh | extracellular matrix binding protein | |||||
| * | ? | CP000730 | = 1617429 | 63 (0.970) | 4 (0.060) | 4/248 | NT | 6.5% | intergenic (+24/+192) | yqkF/USA300HOU_1502 | dehydrogenase/hypothetical protein |
| ? | CP000730 | = 1617470 | 54 (0.860) | intergenic (+65/+151) | yqkF/USA300HOU_1502 | dehydrogenase/hypothetical protein | |||||
| * | ? | CP000730 | 1619594 = | 62 (0.950) | 3 (0.050) | 3/244 | NT | 5.0% | coding (813/816 nt) | proC | pyrroline‑5‑carboxylate reductase |
| ? | CP000730 | 1619661 = | 55 (0.890) | intergenic (+64/+41) | proC/rnz | pyrroline‑5‑carboxylate reductase/ribonuclease Z | |||||
| * | ? | CP000730 | = 1660030 | 55 (0.840) | 5 (0.080) | 3/236 | NT | 8.6% | coding (1279/1464 nt) | yqgP | S54 family peptidase |
| ? | CP000730 | = 1660054 | 56 (0.940) | coding (1255/1464 nt) | yqgP | S54 family peptidase | |||||
| * | ? | CP000730 | = 1695128 | 51 (0.780) | 4 (0.070) | 4/238 | NT | 7.6% | coding (14/129 nt) | USA300HOU_1585 | hypothetical protein |
| ? | CP000730 | = 1695176 | 50 (0.830) | intergenic (‑35/+148) | USA300HOU_1585/lepA | hypothetical protein/GTP‑binding protein LepA | |||||
| * | ? | CP000730 | = 1732970 | 53 (0.810) | 4 (0.070) | 4/234 | NT | 7.3% | intergenic (+156/+81) | yvbT/USA300HOU_1624 | dehydrogenase/hypothetical protein |
| ? | CP000730 | = 1733003 | 53 (0.900) | intergenic (+189/+48) | yvbT/USA300HOU_1624 | dehydrogenase/hypothetical protein | |||||
| * | ? | CP000730 | 1747122 = | 44 (0.670) | 3 (0.050) | 3/230 | NT | 7.2% | intergenic (+83/+47) | USA300HOU_1635/secDF | hypothetical protein/RND superfamily resistance‑nodulation‑cell division protein:proton (H+) antiporter |
| ? | CP000730 | 1747161 = | 38 (0.650) | intergenic (+122/+8) | USA300HOU_1635/secDF | hypothetical protein/RND superfamily resistance‑nodulation‑cell division protein:proton (H+) antiporter | |||||
| * | ? | CP000730 | 1789630 = | 54 (0.830) | 4 (0.070) | 4/236 | NT | 7.7% | intergenic (‑111/+59) | gapB/coaE | glyceraldehyde‑3‑phosphate dehydrogenase (phosphorylating)/dephospho‑CoA kinase |
| ? | CP000730 | 1789673 = | 47 (0.790) | intergenic (‑154/+16) | gapB/coaE | glyceraldehyde‑3‑phosphate dehydrogenase (phosphorylating)/dephospho‑CoA kinase | |||||
| * | ? | CP000730 | 1885475 = | 59 (0.900) | 3 (0.050) | 3/242 | NT | 5.2% | intergenic (‑257/+69) | fmtB1/USA300HOU_1748 | cell surface anchored protein/possible rhodanese domain sulfurtransferase |
| ? | CP000730 | 1885505 = | 54 (0.880) | intergenic (‑287/+39) | fmtB1/USA300HOU_1748 | cell surface anchored protein/possible rhodanese domain sulfurtransferase | |||||
| * | ? | CP000730 | 1912459 = | 41 (0.630) | 3 (0.050) | 3/222 | NT | 6.9% | intergenic (+1992/+91) | sigS/ytbE | camphor resistance protein/possible aldo/keto reductase |
| ? | CP000730 | 2319389 = | 46 (0.820) | intergenic (+2042/+74) | rhbC/asp23 | possible Iuc family aerobactin synthesis protein/alkaline shock protein 23 | |||||
| * | ? | CP000730 | = 1917812 | 48 (0.740) | 4 (0.070) | 4/236 | NT | 8.2% | intergenic (+28/+108) | pckA/pckA | phosphoenolpyruvate carboxykinase (ATP)/transposase |
| ? | CP000730 | = 1917816 | 46 (0.770) | intergenic (+32/+104) | pckA/pckA | phosphoenolpyruvate carboxykinase (ATP)/transposase | |||||
| * | ? | CP000730 | 2008942 = | 56 (0.860) | 4 (0.070) | 4/230 | NT | 7.8% | intergenic (+70/+121) | ygaE/ygaD | hypothetical membrane protein/ABC superfamily ATP binding cassette transporter, membrane protein |
| ? | CP000730 | 2008991 = | 45 (0.770) | intergenic (+119/+72) | ygaE/ygaD | hypothetical membrane protein/ABC superfamily ATP binding cassette transporter, membrane protein | |||||
| * | ? | CP000730 | 2088022 = | 64 (0.980) | 7 (0.120) | 5/224 | NT | 12.1% | intergenic (+39/+1041) | chp/sak | chemotaxis inhibitory protein CHIPS/staphylokinase |
| ? | CP000730 | 2088070 = | 46 (0.810) | intergenic (+87/+993) | chp/sak | chemotaxis inhibitory protein CHIPS/staphylokinase | |||||
| * | ? | CP000730 | = 2121978 | 0 (0.000) | 6 (0.100) | 4/244 | NT | 100% | coding (132/177 nt) | USA300HOU_1999 | hypothetical bacteriophage protein |
| ? | CP000730 | = 2122008 | NA (NA) | coding (102/177 nt) | USA300HOU_1999 | hypothetical bacteriophage protein | |||||
| * | ? | CP000730 | 2207748 = | 67 (1.030) | 4 (0.070) | 4/236 | NT | 6.3% | intergenic (+109/+155) | rodA/USA300HOU_2080 | FtsW/RodA/SpoVE family cell division protein/hypothetical protein |
| ? | CP000730 | 2207798 = | 57 (0.960) | intergenic (+159/+105) | rodA/USA300HOU_2080 | FtsW/RodA/SpoVE family cell division protein/hypothetical protein | |||||
| * | ? | CP000730 | 2248208 = | 76 (1.170) | 4 (0.060) | 4/248 | NT | 5.2% | intergenic (+2/+128) | coaA/USA300HOU_2120 | possible pantothenate kinase/hypothetical protein |
| ? | CP000730 | 2248263 = | 74 (1.180) | intergenic (+57/+73) | coaA/USA300HOU_2120 | possible pantothenate kinase/hypothetical protein | |||||
| * | ? | CP000730 | 2256396 = | 68 (1.040) | 4 (0.070) | 4/230 | NT | 6.1% | intergenic (+49/+72) | deoD2/dps | purine‑nucleoside phosphorylase/Dps family stress protein |
| ? | CP000730 | 2256443 = | 62 (1.070) | intergenic (+96/+25) | deoD2/dps | purine‑nucleoside phosphorylase/Dps family stress protein | |||||
| * | ? | CP000730 | 2303981 = | 53 (0.810) | 3 (0.050) | 3/244 | NT | 5.7% | coding (1158/1188 nt) | USA300HOU_2162 | UTP‑‑glucose‑1‑phosphate uridylyltransferase |
| ? | CP000730 | 2303997 = | 49 (0.790) | coding (1142/1188 nt) | USA300HOU_2162 | UTP‑‑glucose‑1‑phosphate uridylyltransferase | |||||
| * | ? | CP000730 | 2333009 = | 70 (1.070) | 3 (0.050) | 3/234 | NT | 5.1% | intergenic (‑119/+249) | lacA/lacR | galactose‑6‑phosphate isomerase LacA subunit/lactose phosphotransferase system repressor |
| ? | CP000730 | 2333060 = | 48 (0.810) | intergenic (‑170/+198) | lacA/lacR | galactose‑6‑phosphate isomerase LacA subunit/lactose phosphotransferase system repressor | |||||
| * | ? | CP000730 | 2365752 = | 53 (0.810) | 4 (0.070) | 4/240 | NT | 8.2% | coding (200/318 nt) | rplX | ribosomal protein L24 |
| ? | CP000730 | 2365784 = | 40 (0.660) | coding (168/318 nt) | rplX | ribosomal protein L24 | |||||
| * | ? | CP000730 | = 2464733 | 59 (0.900) | 4 (0.070) | 4/222 | NT | 7.1% | intergenic (+29/+19) | gltS/fni | ESS family glutamate:sodium (Na+) symporter/isopentenyl‑diphosphate delta‑isomerase |
| ? | CP000730 | = 2464737 | 54 (0.960) | intergenic (+33/+15) | gltS/fni | ESS family glutamate:sodium (Na+) symporter/isopentenyl‑diphosphate delta‑isomerase | |||||
| * | ? | CP000730 | = 2484170 | 79 (1.210) | 7 (0.120) | 5/230 | NT | 8.6% | intergenic (+32/+34) | USA300HOU_2347/mqo | hypothetical membrane protein/malate dehydrogenase (acceptor) |
| ? | CP000730 | = 2484183 | 79 (1.360) | intergenic (+45/+21) | USA300HOU_2347/mqo | hypothetical membrane protein/malate dehydrogenase (acceptor) | |||||
| * | ? | CP000730 | 2525159 = | 61 (0.940) | 3 (0.050) | 3/246 | NT | 5.3% | coding (270/732 nt) | nirR | transcriptional regulator NirR |
| ? | CP000730 | 2525195 = | 49 (0.790) | coding (234/732 nt) | nirR | transcriptional regulator NirR | |||||
| * | ? | CP000730 | = 2533545 | 74 (1.130) | 4 (0.070) | 4/240 | NT | 5.1% | intergenic (+41/+56) | murN/tcyC | FemAB family peptidoglycan biosynthesis protein/ABC superfamily ATP binding cassette transporter, ABC protein |
| ? | CP000730 | = 2533585 | 79 (1.300) | intergenic (+81/+16) | murN/tcyC | FemAB family peptidoglycan biosynthesis protein/ABC superfamily ATP binding cassette transporter, ABC protein | |||||
| * | ? | CP000730 | = 2609406 | 77 (1.180) | 5 (0.080) | 4/234 | NT | 6.2% | intergenic (‑236/‑199) | USA300HOU_2471/USA300HOU_2472 | hypothetical protein/hypothetical protein |
| ? | CP000730 | = 2609438 | 81 (1.370) | intergenic (‑268/‑167) | USA300HOU_2471/USA300HOU_2472 | hypothetical protein/hypothetical protein | |||||
| * | ? | CP000730 | = 2679966 | 53 (0.810) | 4 (0.070) | 3/228 | NT | 7.2% | intergenic (+18/+514) | cbpD/USA300HOU_2537 | possible secretory antigen/hypothetical protein |
| ? | CP000730 | = 2679991 | 56 (0.970) | intergenic (+43/+489) | cbpD/USA300HOU_2537 | possible secretory antigen/hypothetical protein | |||||
| * | ? | CP000730 | = 2713224 | 72 (1.100) | 4 (0.070) | 4/240 | NT | 5.5% | intergenic (‑322/+286) | isaA/USA300HOU_2565 | immunodominant antigen A/hypothetical membrane protein |
| ? | CP000730 | = 2713244 | 70 (1.150) | intergenic (‑342/+266) | isaA/USA300HOU_2565 | immunodominant antigen A/hypothetical membrane protein | |||||
| * | ? | CP000730 | 2744105 = | 73 (1.120) | 4 (0.070) | 4/238 | NT | 6.0% | intergenic (+42/+151) | fdaB/mqo2 | fructose‑bisphosphate aldolase/malate dehydrogenase (acceptor) |
| ? | CP000730 | 2744143 = | 58 (0.960) | intergenic (+80/+113) | fdaB/mqo2 | fructose‑bisphosphate aldolase/malate dehydrogenase (acceptor) | |||||
| * | ? | CP000730 | = 2830200 | 65 (1.000) | 4 (0.070) | 4/236 | NT | 5.9% | intergenic (+28/+163) | icaC/USA300HOU_2670 | intercellular adhesion protein C/hypothetical protein |
| ? | CP000730 | = 2830235 | 67 (1.120) | intergenic (+63/+128) | icaC/USA300HOU_2670 | intercellular adhesion protein C/hypothetical protein | |||||
| * | ? | CP000730 | 2863041 = | 72 (1.100) | 4 (0.070) | 4/240 | NT | 5.6% | intergenic (+11/+49) | USA300HOU_2706/USA300HOU_2707 | integrase/hypothetical protein |
| ? | CP000730 | 2863075 = | 68 (1.120) | intergenic (+45/+15) | USA300HOU_2706/USA300HOU_2707 | integrase/hypothetical protein | |||||