mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.31.0 revision 69e7c3c0fa11
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 67 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP016816 | 165,251 | 0 | T | . | 77.2% | 698.9 / inf | 345 | intergenic (+215/‑327) | JCVSYN2_00665/JCVSYN2_00670 | tRNA N6‑adenosine(37)‑N6‑threonylcarbamoyltransferase complex dimerization subunit TsaB/tRNA‑Ser |
| * | CP016816 | 202,485 | 0 | T | . | 72.1% | 314.8 / inf | 313 | intergenic (+263/‑412) | JCVSYN2_00840/JCVSYN2_00845 | hypothetical protein/lipoprotein |
| * | CP016816 | 203,895 | 1 | . | T | 69.2% | 945.8 / inf | 422 | intergenic (+279/+179) | JCVSYN2_00845/JCVSYN2_00850 | lipoprotein/inorganic diphosphatase |
| * | CP016816 | 165,252 | 0 | T | . | 60.1% | 106.9 / inf | 345 | intergenic (+216/‑326) | JCVSYN2_00665/JCVSYN2_00670 | tRNA N6‑adenosine(37)‑N6‑threonylcarbamoyltransferase complex dimerization subunit TsaB/tRNA‑Ser |
| * | CP016816 | 105,339 | 0 | T | G | 59.7% | 1105.9 / 221.0 | 907 | intergenic (+834/+92) | JCVSYN2_00420/JCVSYN2_00430 | translation elongation factor Tu/alanine‑‑tRNA ligase |
| * | CP016816 | 202,486 | 0 | T | . | 56.1% | 181.9 / inf | 312 | intergenic (+264/‑411) | JCVSYN2_00840/JCVSYN2_00845 | hypothetical protein/lipoprotein |
| * | CP016816 | 203,895 | 2 | . | T | 54.3% | inf / inf | 422 | intergenic (+279/+179) | JCVSYN2_00845/JCVSYN2_00850 | lipoprotein/inorganic diphosphatase |
| * | CP016816 | 202,494 | 0 | A | T | 51.1% | 34.9 / 259.7 | 314 | intergenic (+272/‑403) | JCVSYN2_00840/JCVSYN2_00845 | hypothetical protein/lipoprotein |
| * | CP016816 | 202,477 | 0 | C | A | 48.9% | 240.9 / 189.8 | 406 | intergenic (+255/‑420) | JCVSYN2_00840/JCVSYN2_00845 | hypothetical protein/lipoprotein |
| * | CP016816 | 165,253 | 0 | T | . | 44.2% | 433.1 / inf | 345 | intergenic (+217/‑325) | JCVSYN2_00665/JCVSYN2_00670 | tRNA N6‑adenosine(37)‑N6‑threonylcarbamoyltransferase complex dimerization subunit TsaB/tRNA‑Ser |
| * | CP016816 | 420,253 | 0 | C | A | 43.1% | 1021.0 / inf | 1158 | intergenic (‑536/+307) | JCVSYN2_01895/JCVSYN2_01900 | 30S ribosomal protein S10/tRNA‑Thr |
| * | CP016816 | 105,362 | 0 | A | . | 42.4% | 936.3 / inf | 856 | intergenic (+857/+69) | JCVSYN2_00420/JCVSYN2_00430 | translation elongation factor Tu/alanine‑‑tRNA ligase |
| * | CP016816 | 203,912 | 0 | G | T | 41.9% | 528.7 / 205.7 | 524 | intergenic (+296/+162) | JCVSYN2_00845/JCVSYN2_00850 | lipoprotein/inorganic diphosphatase |
| * | CP016816 | 202,481 | 0 | C | A | 38.8% | 290.6 / 60.0 | 341 | intergenic (+259/‑416) | JCVSYN2_00840/JCVSYN2_00845 | hypothetical protein/lipoprotein |
| * | CP016816 | 203,952 | 0 | C | A | 36.0% | 1161.1 / 160.4 | 739 | intergenic (+336/+122) | JCVSYN2_00845/JCVSYN2_00850 | lipoprotein/inorganic diphosphatase |
| * | CP016816 | 203,924 | 0 | G | T | 35.5% | 744.9 / 100.7 | 583 | intergenic (+308/+150) | JCVSYN2_00845/JCVSYN2_00850 | lipoprotein/inorganic diphosphatase |
| * | CP016816 | 203,937 | 0 | C | A | 35.0% | 1037.8 / 108.0 | 679 | intergenic (+321/+137) | JCVSYN2_00845/JCVSYN2_00850 | lipoprotein/inorganic diphosphatase |
| * | CP016816 | 76,878 | 0 | G | T | 33.8% | 2360.1 / 283.2 | 1335 | intergenic (‑127/+58) | JCVSYN2_00300/JCVSYN2_00305 | UTP‑‑glucose‑1‑phosphate uridylyltransferase/hypothetical protein |
| * | CP016816 | 202,480 | 0 | T | A | 32.2% | 300.3 / 112.4 | 381 | intergenic (+258/‑417) | JCVSYN2_00840/JCVSYN2_00845 | hypothetical protein/lipoprotein |
| * | CP016816 | 202,462 | 0 | C | A | 32.1% | 766.2 / 102.6 | 511 | intergenic (+240/‑435) | JCVSYN2_00840/JCVSYN2_00845 | hypothetical protein/lipoprotein |
| Marginal new junction evidence (lowest skew 10 of 124 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP016816 | = 203895 | 261 (0.200) | 266 (0.180) +TTT |
94/214 | 10.7 | 47.9% | intergenic (+279/+179) | JCVSYN2_00845/JCVSYN2_00850 | lipoprotein/inorganic diphosphatase |
| ? | CP016816 | 203896 = | 294 (0.200) | intergenic (+280/+178) | JCVSYN2_00845/JCVSYN2_00850 | lipoprotein/inorganic diphosphatase | |||||
| * | ? | CP016816 | = 437880 | 439 (0.380) | 313 (0.220) +ATAT |
73/188 | 12.1 | 35.0% | intergenic (‑184/+238) | JCVSYN2_01985/JCVSYN2_01990 | glycosyl transferase/ABC transporter permease |
| ? | CP016816 | 437881 = | 637 (0.430) | intergenic (‑185/+237) | JCVSYN2_01985/JCVSYN2_01990 | glycosyl transferase/ABC transporter permease | |||||
| * | ? | CP016816 | = 311148 | 470 (0.400) | 273 (0.190) +TATA |
74/192 | 12.2 | 30.3% | intergenic (‑71/‑243) | JCVSYN2_01300/JCVSYN2_01305 | hypothetical protein/30S ribosomal protein S21 |
| ? | CP016816 | 311149 = | 704 (0.480) | intergenic (‑72/‑242) | JCVSYN2_01300/JCVSYN2_01305 | hypothetical protein/30S ribosomal protein S21 | |||||
| * | ? | CP016816 | 105365 = | 972 (0.660) | 138 (0.110) | 84/222 | 12.7 | 14.1% | intergenic (+860/+66) | JCVSYN2_00420/JCVSYN2_00430 | translation elongation factor Tu/alanine‑‑tRNA ligase |
| ? | CP016816 | = 105361 | 831 (0.640) | intergenic (+856/+70) | JCVSYN2_00420/JCVSYN2_00430 | translation elongation factor Tu/alanine‑‑tRNA ligase | |||||
| * | ? | CP016816 | = 202486 | 113 (0.080) | 267 (0.180) | 84/252 | 14.4 | 68.9% | intergenic (+264/‑411) | JCVSYN2_00840/JCVSYN2_00845 | hypothetical protein/lipoprotein |
| ? | CP016816 | 202490 = | 128 (0.090) | intergenic (+268/‑407) | JCVSYN2_00840/JCVSYN2_00845 | hypothetical protein/lipoprotein | |||||
| * | ? | CP016816 | 437885 = | 918 (0.620) | 81 (0.070) | 48/204 | 18.0 | 10.2% | intergenic (‑189/+233) | JCVSYN2_01985/JCVSYN2_01990 | glycosyl transferase/ABC transporter permease |
| ? | CP016816 | = 437880 | 682 (0.570) | intergenic (‑184/+238) | JCVSYN2_01985/JCVSYN2_01990 | glycosyl transferase/ABC transporter permease | |||||
| * | ? | CP016816 | 408841 = | 1809 (1.220) | 52 (0.040) | 42/228 | 20.9 | 3.1% | intergenic (‑105/+23) | JCVSYN2_01790/JCVSYN2_01795 | adenylate kinase/preprotein translocase subunit SecY |
| ? | CP016816 | 408868 = | 1606 (1.200) | coding (1445/1449 nt) | JCVSYN2_01795 | preprotein translocase subunit SecY | |||||
| * | ? | CP016816 | = 408852 | 1731 (1.170) | 57 (0.040) | 41/228 | 21.2 | 3.5% | intergenic (‑116/+12) | JCVSYN2_01790/JCVSYN2_01795 | adenylate kinase/preprotein translocase subunit SecY |
| ? | CP016816 | = 408855 | 1607 (1.200) | intergenic (‑119/+9) | JCVSYN2_01790/JCVSYN2_01795 | adenylate kinase/preprotein translocase subunit SecY | |||||
| * | ? | CP016816 | = 177536 | 1765 (1.190) | 69 (0.050) | 38/226 | 21.8 | 4.2% | coding (643/645 nt) | JCVSYN2_00735 | hypothetical protein |
| ? | CP016816 | = 177541 | 1535 (1.160) | intergenic (+3/+16) | JCVSYN2_00735/JCVSYN2_00740 | hypothetical protein/translation initiation factor IF‑2 | |||||
| * | ? | CP016816 | = 143769 | 1816 (1.230) | 67 (0.050) | 37/226 | 22.1 | 3.9% | intergenic (+28/‑134) | JCVSYN2_00565/JCVSYN2_00570 | acetate kinase/phosphoenolpyruvate‑‑protein phosphotransferase |
| ? | CP016816 | = 143772 | 1632 (1.230) | intergenic (+31/‑131) | JCVSYN2_00565/JCVSYN2_00570 | acetate kinase/phosphoenolpyruvate‑‑protein phosphotransferase | |||||