mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP000730 | 512,643 | 0 | A | G | 50.7% | ‑2.7 / 313.0 | 201 | intergenic (+711/‑150) | recR/rrs1 | recombination protein RecR/16S ribosomal RNA |
| * | CP000730 | 111,516 | 0 | C | A | 26.1% | 233.2 / 78.4 | 115 | Q196K (CAA→AAA) | USA300HOU_0110 | possible staphylococcal tandem lipoprotein |
| * | CP000730 | 111,512 | 0 | A | G | 26.1% | 205.3 / 80.6 | 120 | S194S (TCA→TCG) | USA300HOU_0110 | possible staphylococcal tandem lipoprotein |
| * | CP000730 | 1,056,257 | 0 | C | A | 20.4% | 256.3 / 20.0 | 98 | intergenic (‑1758/+1909) | sspA/atl | S01 family glutamyl endopeptidase/bifunctional N‑acetylmuramoyl‑L‑alanine amidase/mannosyl‑glycoprotein endo‑beta‑N‑acetylglucosaminidase |
| Marginal new junction evidence (lowest skew 10 of 19 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP000730 | 2504852 = | 119 (1.330) | 45 (0.620) | 23/222 | 4.3 | 31.7% | intergenic (+156/+248) | USA300HOU_2365/gltT | hypothetical protein/DAACS family dicarboxylate/amino acid:sodium (Na+) or proton (H+) symporter |
| ? | CP000730 | = 2505034 | 98 (1.360) | intergenic (+338/+66) | USA300HOU_2365/gltT | hypothetical protein/DAACS family dicarboxylate/amino acid:sodium (Na+) or proton (H+) symporter | |||||
| * | ? | CP000730 | 1040357 = | 80 (0.890) | 5 (0.060) | 4/248 | 14.2 | 6.0% | intergenic (‑6774/‑932) | USA300HOU_0983/USA300HOU_0984 | competence protein/glycosyltransferase |
| ? | CP000730 | 1040412 = | 86 (1.070) | intergenic (‑6829/‑877) | USA300HOU_0983/USA300HOU_0984 | competence protein/glycosyltransferase | |||||
| * | ? | CP000730 | 52489 = | 94 (1.050) | 38 (0.480) | 4/246 | 14.2 | 30.3% | intergenic (+99/‑574) | USA300HOU_0043/USA300HOU_0044 | hypothetical membrane protein/possible transcriptional regulator |
| ? | CP000730 | = 52983 | 91 (1.140) | intergenic (+593/‑80) | USA300HOU_0043/USA300HOU_0044 | hypothetical membrane protein/possible transcriptional regulator | |||||
| * | ? | CP000730 | = 811180 | 87 (0.970) | 4 (0.050) | 4/252 | 14.4 | 5.0% | intergenic (+22/‑111) | nrdF/USA300HOU_0757 | ribonucleoside‑diphosphate reductase subunit beta/hypothetical protein |
| ? | CP000730 | = 811226 | 73 (0.890) | intergenic (+68/‑65) | nrdF/USA300HOU_0757 | ribonucleoside‑diphosphate reductase subunit beta/hypothetical protein | |||||
| * | ? | CP000730 | = 365040 | 96 (1.070) | 6 (0.070) | 4/252 | 14.4 | 5.9% | intergenic (+50/+55) | nupC/USA300HOU_0334 | possible CNT family concentrative nucleoside transporter/SSS family solute:sodium (Na+) symporter |
| ? | CP000730 | = 365070 | 103 (1.260) | intergenic (+80/+25) | nupC/USA300HOU_0334 | possible CNT family concentrative nucleoside transporter/SSS family solute:sodium (Na+) symporter | |||||
| * | ? | CP000730 | = 1292499 | 88 (0.980) | 3 (0.040) | 3/244 | 15.0 | 3.8% | intergenic (+53/‑333) | infB/rbfA | translation initiation factor IF‑2/ribosome‑binding factor A |
| ? | CP000730 | = 1292522 | 76 (0.960) | intergenic (+76/‑310) | infB/rbfA | translation initiation factor IF‑2/ribosome‑binding factor A | |||||
| * | ? | CP000730 | 691779 = | 101 (1.130) | 3 (0.040) | 3/248 | 15.1 | 3.2% | coding (43/1056 nt) | USA300HOU_0634 | hypothetical protein |
| ? | CP000730 | 691838 = | 91 (1.130) | intergenic (‑17/+44) | USA300HOU_0634/USA300HOU_0635 | hypothetical protein/possible replication initiation protein | |||||
| * | ? | CP000730 | 613921 = | 126 (1.410) | 5 (0.060) | 3/248 | 15.1 | 4.2% | coding (2233/2844 nt) | sdrC | Ser‑Asp rich fibrinogen/bone sialoprotein‑binding protein SdrC |
| ? | CP000730 | = 613908 | 114 (1.420) | coding (2220/2844 nt) | sdrC | Ser‑Asp rich fibrinogen/bone sialoprotein‑binding protein SdrC | |||||
| * | ? | CP000730 | = 1649047 | 64 (0.710) | 3 (0.040) | 3/252 | 15.3 | 4.9% | intergenic (+39/+326) | yqhL/gcvPB | possible rhodanese domain sulfurtransferase/glycine dehydrogenase (decarboxylating) subunit 2 |
| ? | CP000730 | = 1649070 | 59 (0.720) | intergenic (+62/+303) | yqhL/gcvPB | possible rhodanese domain sulfurtransferase/glycine dehydrogenase (decarboxylating) subunit 2 | |||||
| * | ? | CP000730 | 802131 = | 97 (1.080) | 3 (0.040) | 3/254 | 15.4 | 3.1% | intergenic (+372/+252) | USA300HOU_0748/dgkA1 | hypothetical protein/possible diacylglycerol kinase |
| ? | CP000730 | 802180 = | 98 (1.190) | intergenic (+421/+203) | USA300HOU_0748/dgkA1 | hypothetical protein/possible diacylglycerol kinase | |||||