Notes

Publication: None

ALE, flask, and isolate counts

ALE replicate Flask count Isolate count
1 1 1
2 1 1
3 1 1
4 1 1
5 1 1
6 1 1
7 1 1
8 1 1
9 1 1
10 1 1
11 1 1
12 1 1
13 1 1
14 1 1
15 1 1
16 1 1
17 1 1
18 1 1
19 1 1
19 19 19

ALE experiment mutation counts

Mutation Type Unique Observed
Single Base Substitutions 321 393
Multiple Base Substitutions 0 0
Deletions 8 64
Insertions 8 62
Mobile Element Insertions 9 27
Amplifications 0 0
Gene Conversions 0 0
Inversions 0 0
Total 346 546

Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Unassigned Missing Coverage Evidence Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F73 I1 R1 25 0 42.7 1458618 99.3% 1448407 139.7
A2 F73 I1 R1 28 0 55.5 1910630 99.4% 1899166 139.6
A3 F73 I1 R1 31 0 155.0 5372566 99.4% 5340330 138.8
A4 F73 I1 R1 34 0 165.5 5788016 99.4% 5753287 139.0
A5 F73 I1 R1 26 0 112.8 3944598 99.4% 3920930 139.1
A6 F73 I1 R1 27 0 96.7 3387584 99.2% 3360483 139.0
A7 F73 I1 R1 25 0 176.1 6189656 99.4% 6152518 139.1
A8 F73 I1 R1 26 0 120.1 4160322 99.4% 4135360 139.4
A9 F73 I1 R1 23 0 118.7 4101652 99.4% 4077042 139.6
A10 F73 I1 R1 32 0 62.3 2122626 99.3% 2107767 139.0
A11 F73 I1 R1 25 0 152.4 5188702 99.3% 5152381 138.9
A12 F73 I1 R1 33 0 173.2 5926254 99.4% 5890696 139.1
A13 F73 I1 R1 31 0 87.4 2981252 99.2% 2957401 139.2
A14 F73 I1 R1 22 0 169.1 5837904 99.3% 5797038 139.2
A15 F73 I1 R1 35 0 132.9 4459888 99.4% 4433128 139.7
A16 F73 I1 R1 29 0 78.1 2629632 99.3% 2611224 139.6
A17 F73 I1 R1 27 0 27.5 927150 99.2% 919732 139.3
A18 F73 I1 R1 33 0 24.4 825568 99.2% 818963 139.0
A19 F73 I1 R1 34 0 46.1 1587140 99.3% 1576030 138.9

Mutation Needle Plot

Mutation Targets

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