mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | ||||||
|---|---|---|---|---|---|---|
| evidence | position | mutation | freq | annotation | gene | description |
| RA | 9,907 | A→C | 11.8% | intergenic (+14/+21) | mog → / ← satP | molybdochelatase incorporating molybdenum into molybdopterin/succinate‑acetate transporter |
| RA | 9,908 | G→T | 9.4% | intergenic (+15/+20) | mog → / ← satP | molybdochelatase incorporating molybdenum into molybdopterin/succinate‑acetate transporter |
| RA | 10,195 | A→C | 9.8% | G100G (GGT→GGG) | satP ← | succinate‑acetate transporter |
| RA | 22,773 | A→T | 13.9% | E128V (GAA→GTA) | ileS → | isoleucyl‑tRNA synthetase |
| RA | 22,776 | A→T | 14.3% | Y129F (TAC→TTC) | ileS → | isoleucyl‑tRNA synthetase |
| RA | 191,720 | G→A | 11.7% | intergenic (+12/‑135) | tsf → / → pyrH | translation elongation factor EF‑Ts/uridylate kinase |
| RA | 191,728 | T→C | 10.7% | intergenic (+20/‑127) | tsf → / → pyrH | translation elongation factor EF‑Ts/uridylate kinase |
| RA | 191,729 | G→T | 10.7% | intergenic (+21/‑126) | tsf → / → pyrH | translation elongation factor EF‑Ts/uridylate kinase |
| RA | 191,730 | A→C | 10.3% | intergenic (+22/‑125) | tsf → / → pyrH | translation elongation factor EF‑Ts/uridylate kinase |
| RA | 191,731 | G→A | 11.1% | intergenic (+23/‑124) | tsf → / → pyrH | translation elongation factor EF‑Ts/uridylate kinase |
| RA | 191,739 | T→C | 10.9% | intergenic (+31/‑116) | tsf → / → pyrH | translation elongation factor EF‑Ts/uridylate kinase |
| RA | 207,483 | A→C | 12.8% | V786V (GTA→GTC) | dnaE → | DNA polymerase III alpha subunit |
| RA | 207,486 | G→T | 12.5% | M787I (ATG→ATT) | dnaE → | DNA polymerase III alpha subunit |
| RA | 208,552 | T→A | 7.0% | L1143I (TTA→ATA) | dnaE → | DNA polymerase III alpha subunit |
| RA | 252,589 | G→C | 9.8% | A97P (GCA→CCA) | yafO → | mRNA interferase toxin of the YafO‑YafN toxin‑antitoxin system |
| RA | 256,449 | T→C | 11.7% | intergenic (+14/‑78) | gpt → / → frsA | xanthine phosphoribosyltransferase; xanthine‑guanine phosphoribosyltransferase/fermentation‑respiration switch protein; PTS Enzyme IIA(Glc)‑binding protein; pNP‑butyrate esterase activity |
| RA | 256,454 | C→G | 11.3% | intergenic (+19/‑73) | gpt → / → frsA | xanthine phosphoribosyltransferase; xanthine‑guanine phosphoribosyltransferase/fermentation‑respiration switch protein; PTS Enzyme IIA(Glc)‑binding protein; pNP‑butyrate esterase activity |
| RA | 256,459 | G→A | 12.1% | intergenic (+24/‑68) | gpt → / → frsA | xanthine phosphoribosyltransferase; xanthine‑guanine phosphoribosyltransferase/fermentation‑respiration switch protein; PTS Enzyme IIA(Glc)‑binding protein; pNP‑butyrate esterase activity |
| MC JC | 257,908 | Δ776 bp | 100% | [crl] | [crl] | |
| RA | 272,330:1 | +G | 8.2% | intergenic (+141/‑250) | insN → / → eyeA | pseudogene, IS911 transposase A;IS, phage, Tn; Transposon‑related functions; extrachromosomal; transposon related/novel sRNA, function unknown, CP4‑6 propahge |
| RA | 374,682 | C→T | 12.1% | P272L (CCG→CTG) ‡ | mhpE → | 4‑hyroxy‑2‑oxovalerate/4‑hydroxy‑2‑oxopentanoic acid aldolase, class I |
| RA | 374,683 | G→C | 9.7% | P272P (CCG→CCC) ‡ | mhpE → | 4‑hyroxy‑2‑oxovalerate/4‑hydroxy‑2‑oxopentanoic acid aldolase, class I |
| RA | 374,688 | G→C | 9.7% | R274P (CGA→CCA) ‡ | mhpE → | 4‑hyroxy‑2‑oxovalerate/4‑hydroxy‑2‑oxopentanoic acid aldolase, class I |
| RA | 374,689 | A→G | 9.5% | R274R (CGA→CGG) ‡ | mhpE → | 4‑hyroxy‑2‑oxovalerate/4‑hydroxy‑2‑oxopentanoic acid aldolase, class I |
| RA | 381,301 | A→T | 8.7% | intergenic (‑41/‑50) | yaiX ← / → insC1 | pseudogene, interrupted by IS2A; hexapeptide transferase superfamily; putative transferase/IS2 repressor TnpA |
| RA | 381,302 | A→T | 8.7% | intergenic (‑42/‑49) | yaiX ← / → insC1 | pseudogene, interrupted by IS2A; hexapeptide transferase superfamily; putative transferase/IS2 repressor TnpA |
| RA | 464,354 | C→A | 11.8% | intergenic (+46/‑48) | ybaV → / → fadM | putative competence‑suppressing periplasmic helix‑hairpin‑helix DNA‑binding protein/long‑chain acyl‑CoA thioesterase III |
| RA | 464,356 | A→T | 11.5% | intergenic (+48/‑46) | ybaV → / → fadM | putative competence‑suppressing periplasmic helix‑hairpin‑helix DNA‑binding protein/long‑chain acyl‑CoA thioesterase III |
| RA | 464,358 | T→G | 11.3% | intergenic (+50/‑44) | ybaV → / → fadM | putative competence‑suppressing periplasmic helix‑hairpin‑helix DNA‑binding protein/long‑chain acyl‑CoA thioesterase III |
| RA | 481,225 | T→G | 13.5% | intergenic (‑517/+29) | tomB ← / ← acrB | Hha toxicity attenuator; conjugation‑related protein/multidrug efflux system protein |
| RA | 481,228 | C→A | 13.2% | intergenic (‑520/+26) | tomB ← / ← acrB | Hha toxicity attenuator; conjugation‑related protein/multidrug efflux system protein |
| RA | 543,207 | A→T | 10.2% | intergenic (+174/+54) | glxK → / ← allE | glycerate kinase II/S‑ureidoglycine aminohydrolase |
| RA | 543,210 | A→T | 10.2% | intergenic (+177/+51) | glxK → / ← allE | glycerate kinase II/S‑ureidoglycine aminohydrolase |
| RA | 569,160 | G→T | 21.4% | D87Y (GAC→TAC) ‡ | ybcK → | DLP12 prophage; putative recombinase |
| RA | 569,161 | A→C | 22.0% | D87A (GAC→GCC) ‡ | ybcK → | DLP12 prophage; putative recombinase |
| RA | 639,654 | T→C | 13.6% | intergenic (+146/‑99) | ahpC → / → ahpF | alkyl hydroperoxide reductase, C22 subunit/alkyl hydroperoxide reductase, F52a subunit, FAD/NAD(P)‑binding |
| RA | 639,657 | G→A | 14.9% | intergenic (+149/‑96) | ahpC → / → ahpF | alkyl hydroperoxide reductase, C22 subunit/alkyl hydroperoxide reductase, F52a subunit, FAD/NAD(P)‑binding |
| RA | 644,030 | A→G | 8.8% | intergenic (‑63/+167) | rnk ← / ← rna | regulator of nucleoside diphosphate kinase/ribonuclease I |
| RA | 644,034 | T→C | 6.9% | intergenic (‑67/+163) | rnk ← / ← rna | regulator of nucleoside diphosphate kinase/ribonuclease I |
| RA | 644,036 | A→T | 6.8% | intergenic (‑69/+161) | rnk ← / ← rna | regulator of nucleoside diphosphate kinase/ribonuclease I |
| RA | 644,038 | G→A | 7.0% | intergenic (‑71/+159) | rnk ← / ← rna | regulator of nucleoside diphosphate kinase/ribonuclease I |
| RA | 644,042 | C→T | 7.0% | intergenic (‑75/+155) | rnk ← / ← rna | regulator of nucleoside diphosphate kinase/ribonuclease I |
| RA | 657,531 | T→G | 8.7% | intergenic (+30/+24) | cspE → / ← flc | constitutive cold shock family transcription antitermination protein; negative regulator of cspA transcription; RNA melting protein; ssDNA‑binding protein/fluoride efflux channel, dual topology membrane protein |
| RA | 657,533 | A→T | 8.5% | intergenic (+32/+22) | cspE → / ← flc | constitutive cold shock family transcription antitermination protein; negative regulator of cspA transcription; RNA melting protein; ssDNA‑binding protein/fluoride efflux channel, dual topology membrane protein |
| RA | 657,535 | C→A | 8.2% | intergenic (+34/+20) | cspE → / ← flc | constitutive cold shock family transcription antitermination protein; negative regulator of cspA transcription; RNA melting protein; ssDNA‑binding protein/fluoride efflux channel, dual topology membrane protein |
| RA | 665,094 | G→C | 9.3% | P33A (CCT→GCT) | rlpA ← | septal ring protein, suppressor of prc, minor lipoprotein |
| RA | 710,170 | C→T | 18.2% | intergenic (+54/+30) | chiQ → / ← fur | chitosugar‑induced verified lipoprotein/ferric iron uptake regulon transcriptional repressor; autorepressor |
| RA | 710,173 | A→G | 17.4% | intergenic (+57/+27) | chiQ → / ← fur | chitosugar‑induced verified lipoprotein/ferric iron uptake regulon transcriptional repressor; autorepressor |
| RA | 770,679 | G→T | 18.9% | intergenic (+68/‑779) | mngB → / → cydA | alpha‑mannosidase/cytochrome d terminal oxidase, subunit I |
| RA | 770,682 | A→C | 19.4% | intergenic (+71/‑776) | mngB → / → cydA | alpha‑mannosidase/cytochrome d terminal oxidase, subunit I |
| RA | 782,999 | T→G | 8.9% | L305L (CTT→CTG) | nadA → | quinolinate synthase, subunit A |
| RA | 783,000 | C→A | 8.7% | Q306K (CAG→AAG) | nadA → | quinolinate synthase, subunit A |
| RA | 805,312 | G→T | 9.3% | E604* (GAG→TAG) ‡ | ybhJ → | aconitase family protein |
| RA | 805,313 | A→C | 9.3% | E604A (GAG→GCG) ‡ | ybhJ → | aconitase family protein |
| RA | 847,203 | T→C | 9.8% | intergenic (‑84/+55) | glnP ← / ← glnH | glutamine transporter subunit/glutamine transporter subunit |
| RA | 857,576 | T→C | 13.5% | intergenic (+21/+220) | ybiT → / ← ybiU | ABC‑F family putative regulatory ATPase/DUF1479 family protein |
| RA | 857,578 | C→G | 13.5% | intergenic (+23/+218) | ybiT → / ← ybiU | ABC‑F family putative regulatory ATPase/DUF1479 family protein |
| RA | 857,580 | G→A | 13.5% | intergenic (+25/+216) | ybiT → / ← ybiU | ABC‑F family putative regulatory ATPase/DUF1479 family protein |
| RA | 940,380 | T→C | 8.3% | L318S (TTG→TCG) | serS → | seryl‑tRNA synthetase |
| RA | 940,751 | T→C | 15.9% | intergenic (+31/‑208) | serS → / → dmsA | seryl‑tRNA synthetase/dimethyl sulfoxide reductase, anaerobic, subunit A |
| RA | 940,754 | G→A | 16.7% | intergenic (+34/‑205) | serS → / → dmsA | seryl‑tRNA synthetase/dimethyl sulfoxide reductase, anaerobic, subunit A |
| RA | 1,015,912 | T→A | 10.7% | intergenic (+30/+40) | rmf → / ← fabA | ribosome modulation factor/beta‑hydroxydecanoyl thioester dehydrase |
| RA | 1,153,208 | T→C | 12.0% | intergenic (+28/‑92) | fabF → / → pabC | 3‑oxoacyl‑[acyl‑carrier‑protein] synthase II/4‑amino‑4‑deoxychorismate lyase component of para‑aminobenzoate synthase multienzyme complex |
| RA | 1,153,213 | T→A | 11.8% | intergenic (+33/‑87) | fabF → / → pabC | 3‑oxoacyl‑[acyl‑carrier‑protein] synthase II/4‑amino‑4‑deoxychorismate lyase component of para‑aminobenzoate synthase multienzyme complex |
| RA | 1,153,214 | T→A | 11.8% | intergenic (+34/‑86) | fabF → / → pabC | 3‑oxoacyl‑[acyl‑carrier‑protein] synthase II/4‑amino‑4‑deoxychorismate lyase component of para‑aminobenzoate synthase multienzyme complex |
| RA | 1,153,219 | G→A | 12.5% | intergenic (+39/‑81) | fabF → / → pabC | 3‑oxoacyl‑[acyl‑carrier‑protein] synthase II/4‑amino‑4‑deoxychorismate lyase component of para‑aminobenzoate synthase multienzyme complex |
| RA | 1,224,239 | A→T | 9.1% | intergenic (+332/+40) | ycgI → / ← minE | pseudogene/cell division topological specificity factor |
| RA | 1,224,242 | A→T | 7.5% | intergenic (+335/+37) | ycgI → / ← minE | pseudogene/cell division topological specificity factor |
| RA | 1,250,962 | T→C | 12.4% | intergenic (‑124/‑104) | dhaK ← / → dhaR | dihydroxyacetone kinase, PTS‑dependent, dihydroxyacetone‑binding subunit/dhaKLM operon transcription activator |
| RA | 1,250,963 | A→T | 12.3% | intergenic (‑125/‑103) | dhaK ← / → dhaR | dihydroxyacetone kinase, PTS‑dependent, dihydroxyacetone‑binding subunit/dhaKLM operon transcription activator |
| RA | 1,250,964 | G→A | 12.2% | intergenic (‑126/‑102) | dhaK ← / → dhaR | dihydroxyacetone kinase, PTS‑dependent, dihydroxyacetone‑binding subunit/dhaKLM operon transcription activator |
| RA | 1,285,190 | T→A | 16.3% | L18I (TTA→ATA) | narJ → | molybdenum‑cofactor‑assembly chaperone delta subunit of nitrate reductase 1 |
| RA | 1,285,193 | T→A | 16.3% | W19R (TGG→AGG) | narJ → | molybdenum‑cofactor‑assembly chaperone delta subunit of nitrate reductase 1 |
| RA | 1,292,472 | G→A | 10.2% | intergenic (+107/+37) | galU → / ← hns | glucose‑1‑phosphate uridylyltransferase/global DNA‑binding transcriptional dual regulator H‑NS |
| RA | 1,292,473 | C→G | 10.3% | intergenic (+108/+36) | galU → / ← hns | glucose‑1‑phosphate uridylyltransferase/global DNA‑binding transcriptional dual regulator H‑NS |
| RA | 1,292,474 | T→C | 10.0% | intergenic (+109/+35) | galU → / ← hns | glucose‑1‑phosphate uridylyltransferase/global DNA‑binding transcriptional dual regulator H‑NS |
| RA | 1,330,396:1 | +T | 7.5% | intergenic (+15/+21) | sohB → / ← yciN | inner membrane protein, S49 peptidase family protein/DUF2498 protein YciN |
| RA | 1,330,399 | A→T | 7.4% | intergenic (+18/+18) | sohB → / ← yciN | inner membrane protein, S49 peptidase family protein/DUF2498 protein YciN |
| RA | 1,330,402 | Δ1 bp | 7.4% | intergenic (+21/+15) | sohB → / ← yciN | inner membrane protein, S49 peptidase family protein/DUF2498 protein YciN |
| RA | 1,375,088 | G→C | 9.4% | V42V (GTG→GTC) | ycjQ → | putative Zn‑dependent NAD(P)‑binding oxidoreductase |
| RA | 1,375,090 | T→A | 9.2% | V43D (GTC→GAC) | ycjQ → | putative Zn‑dependent NAD(P)‑binding oxidoreductase |
| RA | 1,375,092 | G→C | 9.6% | D44H (GAC→CAC) | ycjQ → | putative Zn‑dependent NAD(P)‑binding oxidoreductase |
| RA | 1,446,357:1 | +T | 12.5% | intergenic (+151/+21) | ydbL → / ← feaR | DUF1318 family protein/transcriptional activator for tynA and feaB |
| RA | 1,446,362 | Δ1 bp | 13.3% | intergenic (+156/+16) | ydbL → / ← feaR | DUF1318 family protein/transcriptional activator for tynA and feaB |
| RA | 1,449,050 | T→A | 13.2% | intergenic (+32/+26) | feaB → / ← tynA | phenylacetaldehyde dehydrogenase/tyramine oxidase, copper‑requiring |
| RA | 1,493,194 | G→C | 9.3% | S242T (AGT→ACT) | trg → | methyl‑accepting chemotaxis protein III, ribose and galactose sensor receptor |
| RA | 1,608,704 | A→G | 13.3% | S107P (TCG→CCG) | yneE ← | bestrophin family putative inner membrane protein |
| RA | 1,608,707 | C→T | 13.3% | D106N (GAT→AAT) | yneE ← | bestrophin family putative inner membrane protein |
| RA | 1,685,527 | A→G | 100% | G354G (GGT→GGC) | fumC ← | fumarate hydratase (fumarase C),aerobic Class II |
| RA | 1,698,585 | T→G | 12.2% | E199A (GAA→GCA) | malI ← | transcriptional repressor of Mal regulon |
| RA | 1,698,587 | T→A | 11.6% | A198A (GCA→GCT) ‡ | malI ← | transcriptional repressor of Mal regulon |
| RA | 1,698,589 | C→A | 12.2% | A198S (GCA→TCA) ‡ | malI ← | transcriptional repressor of Mal regulon |
| RA | 1,727,292 | G→A | 8.7% | A212T (GCA→ACA) | nemA → | chromate reductase, quinone reductase, FMN‑linked; N‑Ethylmaleimide reductase; old yellow enzyme |
| RA | 1,757,688 | T→A | 16.6% | intergenic (+31/+33) | lpp → / ← ldtE | murein lipoprotein/murein L,D‑transpeptidase |
| RA | 1,795,227 | A→T | 22.2% | intergenic (‑75/+26) | btuC ← / ← ihfA | vitamin B12 ABC transporter permease/integration host factor (IHF), DNA‑binding protein, alpha subunit |
| RA | 1,795,228 | G→C | 22.2% | intergenic (‑76/+25) | btuC ← / ← ihfA | vitamin B12 ABC transporter permease/integration host factor (IHF), DNA‑binding protein, alpha subunit |
| RA | 1,795,229 | A→T | 22.2% | intergenic (‑77/+24) | btuC ← / ← ihfA | vitamin B12 ABC transporter permease/integration host factor (IHF), DNA‑binding protein, alpha subunit |
| RA | 1,799,169 | T→G | 10.3% | intergenic (‑227/+57) | pheS ← / ← pheM | phenylalanine tRNA synthetase, alpha subunit/phenylalanyl‑tRNA synthetase operon leader peptide |
| RA | 1,799,170 | G→T | 10.5% | intergenic (‑228/+56) | pheS ← / ← pheM | phenylalanine tRNA synthetase, alpha subunit/phenylalanyl‑tRNA synthetase operon leader peptide |
| RA | 1,880,851 | T→A | 14.3% | intergenic (‑92/+35) | leuE ← / ← dmlR | leucine efflux protein/transcriptional activator of dmlA |
| RA | 1,880,852 | T→A | 14.3% | intergenic (‑93/+34) | leuE ← / ← dmlR | leucine efflux protein/transcriptional activator of dmlA |
| RA | 1,955,176 | Δ1 bp | 14.7% | coding (1832/2430 nt) | torZ ← | trimethylamine N‑oxide reductase system III, catalytic subunit |
| MC JC | 1,978,503 | Δ776 bp | 100% | insB1–insA | insB1, insA | |
| RA | 1,985,112 | C→G | 19.7% | intergenic (‑43/+27) | araG ← / ← araF | L‑arabinose ABC transporter ATPase/L‑arabinose ABC transporter periplasmic binding protein |
| RA | 2,062,354 | T→A | 8.7% | intergenic (+19/+37) | asnV → / ← ldtA | tRNA‑Asn/L,D‑transpeptidase linking Lpp to murein |
| RA | 2,062,355 | T→G | 8.7% | intergenic (+20/+36) | asnV → / ← ldtA | tRNA‑Asn/L,D‑transpeptidase linking Lpp to murein |
| RA | 2,062,356 | C→A | 8.7% | intergenic (+21/+35) | asnV → / ← ldtA | tRNA‑Asn/L,D‑transpeptidase linking Lpp to murein |
| RA | 2,062,357 | T→A | 8.7% | intergenic (+22/+34) | asnV → / ← ldtA | tRNA‑Asn/L,D‑transpeptidase linking Lpp to murein |
| RA | 2,081,688 | A→T | 16.7% | I287N (ATT→AAT) | dacD ← | D‑alanyl‑D‑alanine carboxypeptidase; penicillin‑binding protein 6b |
| RA | 2,145,313 | C→A | 100% | S683Y (TCC→TAC) | yegE → | putative diguanylate cyclase |
| RA | 2,173,361 | Δ2 bp | 100% | pseudogene (1‑2/442 nt) | gatC ← | pseudogene, galactitol‑specific enzyme IIC component of PTS;transport; Transport of small molecules: Carbohydrates, organic acids, alcohols; PTS system galactitol‑specific enzyme IIC |
| RA | 2,206,298 | C→T | 16.0% | H202Y (CAC→TAC) | yehM → | uncharacterized protein |
| RA | 2,261,044 | C→T | 9.0% | A123T (GCT→ACT) | fruA ← | fused fructose‑specific PTS enzymes: IIBcomponent/IIC components |
| RA | 2,270,602 | T→C | 11.9% | intergenic (+57/‑124) | mepS → / → rtn | murein DD‑endopeptidase, space‑maker hydrolase, mutational suppressor of prc thermosensitivity, outer membrane lipoprotein, weak murein LD‑carboxypeptidase/resistance protein for phages lambda and N4, putative membrane‑anchored cyclic‑di‑GMP phosphodiesterase |
| RA | 2,270,605 | G→A | 11.6% | intergenic (+60/‑121) | mepS → / → rtn | murein DD‑endopeptidase, space‑maker hydrolase, mutational suppressor of prc thermosensitivity, outer membrane lipoprotein, weak murein LD‑carboxypeptidase/resistance protein for phages lambda and N4, putative membrane‑anchored cyclic‑di‑GMP phosphodiesterase |
| RA | 2,282,830 | T→C | 16.7% | intergenic (+29/+110) | rplY → / ← yejK | 50S ribosomal subunit protein L25/spermidine nucleoid‑associated protein |
| RA | 2,282,831 | C→G | 17.2% | intergenic (+30/+109) | rplY → / ← yejK | 50S ribosomal subunit protein L25/spermidine nucleoid‑associated protein |
| RA | 2,282,832 | C→G | 16.8% | intergenic (+31/+108) | rplY → / ← yejK | 50S ribosomal subunit protein L25/spermidine nucleoid‑associated protein |
| RA | 2,282,833 | G→A | 17.2% | intergenic (+32/+107) | rplY → / ← yejK | 50S ribosomal subunit protein L25/spermidine nucleoid‑associated protein |
| RA | 2,318,095 | C→G | 100% | L594F (TTG→TTC) | rcsC ← | hybrid sensory kinase in two‑component regulatory system with RcsB and YojN |
| RA | 2,325,037:1 | +T | 11.4% | coding (282/1323 nt) | atoE → | short chain fatty acid transporter |
| RA | 2,325,042 | Δ1 bp | 11.4% | coding (287/1323 nt) | atoE → | short chain fatty acid transporter |
| RA | 2,333,310 | T→C | 8.0% | pseudogene (1093/4605 nt) | yfaS ← | pseudogene, bacterial alpha2‑macroglobulin YfaS variant family; putative membrane protein |
| RA | 2,414,689 | C→G | 17.1% | intergenic (+17/‑58) | ackA → / → pta | acetate kinase A and propionate kinase 2/phosphate acetyltransferase |
| RA | 2,440,865 | C→T | 8.7% | L247L (CTG→CTA) ‡ | fabB ← | 3‑oxoacyl‑[acyl‑carrier‑protein] synthase I |
| RA | 2,440,866 | A→G | 8.7% | L247P (CTG→CCG) ‡ | fabB ← | 3‑oxoacyl‑[acyl‑carrier‑protein] synthase I |
| RA | 2,527,849 | A→G | 9.1% | I302V (ATC→GTC) | yfeH → | putative inorganic ion transporter |
| RA | 2,536,370 | C→G | 18.2% | intergenic (+27/+16) | crr → / ← pdxK | glucose‑specific enzyme IIA component of PTS/pyridoxal‑pyridoxamine kinase/hydroxymethylpyrimidine kinase |
| RA | 2,536,373 | C→G | 16.0% | intergenic (+30/+13) | crr → / ← pdxK | glucose‑specific enzyme IIA component of PTS/pyridoxal‑pyridoxamine kinase/hydroxymethylpyrimidine kinase |
| RA | 2,550,574 | C→G | 16.4% | intergenic (‑29/+67) | yfeX ← / ← yfeY | porphyrinogen oxidase, cytoplasmic/RpoE‑regulated lipoprotein |
| RA | 2,550,576 | A→T | 16.7% | intergenic (‑31/+65) | yfeX ← / ← yfeY | porphyrinogen oxidase, cytoplasmic/RpoE‑regulated lipoprotein |
| RA | 2,550,578 | C→G | 17.6% | intergenic (‑33/+63) | yfeX ← / ← yfeY | porphyrinogen oxidase, cytoplasmic/RpoE‑regulated lipoprotein |
| RA | 2,566,266 | C→A | 8.8% | G207C (GGC→TGC) | eutA ← | reactivating factor for ethanolamine ammonia lyase |
| RA | 2,566,267 | T→G | 8.7% | A206A (GCA→GCC) | eutA ← | reactivating factor for ethanolamine ammonia lyase |
| RA | 2,589,122 | G→A | 8.2% | G510S (GGC→AGC) | acrD → | aminoglycoside/multidrug efflux system |
| RA | 2,589,125 | T→C | 8.3% | F511L (TTT→CTT) | acrD → | aminoglycoside/multidrug efflux system |
| RA | 2,630,079 | G→A | 11.1% | T96T (ACG→ACA) | yfgH → | outer membrane integrity lipoprotein |
| RA | 2,707,320 | A→T | 9.4% | intergenic (‑196/+2) | lepA ← / ← rseC | back‑translocating elongation factor EF4, GTPase/SoxR iron‑sulfur cluster reduction factor component |
| RA | 2,707,321 | A→T | 9.6% | intergenic (‑197/+1) | lepA ← / ← rseC | back‑translocating elongation factor EF4, GTPase/SoxR iron‑sulfur cluster reduction factor component |
| RA | 2,716,030 | T→G | 8.5% | intergenic (+20/+36) | eamB → / ← grcA | cysteine and O‑acetylserine exporter/autonomous glycyl radical cofactor |
| RA | 2,716,033 | C→A | 9.0% | intergenic (+23/+33) | eamB → / ← grcA | cysteine and O‑acetylserine exporter/autonomous glycyl radical cofactor |
| RA | 2,724,095 | C→A | 7.4% | intergenic (+13/‑33) | pssA → / → yfiM | phosphatidylserine synthase; CDP‑diacylglycerol‑serine O‑phosphatidyltransferase/putative lipoprotein |
| RA | 2,724,097 | T→A | 7.4% | intergenic (+15/‑31) | pssA → / → yfiM | phosphatidylserine synthase; CDP‑diacylglycerol‑serine O‑phosphatidyltransferase/putative lipoprotein |
| RA | 2,724,099 | T→G | 7.0% | intergenic (+17/‑29) | pssA → / → yfiM | phosphatidylserine synthase; CDP‑diacylglycerol‑serine O‑phosphatidyltransferase/putative lipoprotein |
| RA | 2,761,620 | T→G | 7.0% | K641Q (AAG→CAG) | yfjK ← | radiation resistance protein; DEAD/H helicase‑like protein; CP4‑57 putative defective prophage |
| RA | 2,761,623 | C→A | 7.0% | V640L (GTA→TTA) | yfjK ← | radiation resistance protein; DEAD/H helicase‑like protein; CP4‑57 putative defective prophage |
| RA | 2,778,123 | G→T | 16.0% | intergenic (+341/+23) | ypjF → / ← ypjA | CP4‑57 prophage; toxin of the YpjF‑YfjZ toxin‑antitoxin system/adhesin‑like autotransporter |
| RA | 2,778,124 | A→C | 16.8% | intergenic (+342/+22) | ypjF → / ← ypjA | CP4‑57 prophage; toxin of the YpjF‑YfjZ toxin‑antitoxin system/adhesin‑like autotransporter |
| RA | 2,800,515 | C→A | 11.4% | intergenic (+40/‑208) | ygaM → / → nrdH | putative membrane‑anchored DUF883 family ribosome‑binding protein/hydrogen donor for NrdEF electron transport system; glutaredoxin‑like protein |
| RA | 2,800,517 | T→A | 11.1% | intergenic (+42/‑206) | ygaM → / → nrdH | putative membrane‑anchored DUF883 family ribosome‑binding protein/hydrogen donor for NrdEF electron transport system; glutaredoxin‑like protein |
| RA | 2,800,519 | T→G | 10.8% | intergenic (+44/‑204) | ygaM → / → nrdH | putative membrane‑anchored DUF883 family ribosome‑binding protein/hydrogen donor for NrdEF electron transport system; glutaredoxin‑like protein |
| RA | 2,838,222 | A→T | 11.1% | intergenic (‑117/+32) | hydN ← / ← ascG | formate dehydrogenase‑H, [4Fe‑4S] ferredoxin subunit/asc operon transcriptional repressor; prpBC operon repressor |
| RA | 2,850,154 | C→A | 6.6% | Q94H (CAG→CAT) | hycA ← | regulator of the transcriptional regulator FhlA |
| RA | 2,911,007 | G→A | 7.8% | R29C (CGT→TGT) | mazF ← | mRNA interferase toxin, antitoxin is MazE |
| RA | 2,911,008 | A→T | 7.7% | H28Q (CAT→CAA) ‡ | mazF ← | mRNA interferase toxin, antitoxin is MazE |
| RA | 2,911,009 | T→C | 7.5% | H28R (CAT→CGT) ‡ | mazF ← | mRNA interferase toxin, antitoxin is MazE |
| RA | 3,066,319 | Δ1 bp | 10.0% | coding (855/897 nt) | ygfI ← | putative DNA‑binding transcriptional regulator |
| RA | 3,156,590 | C→A | 13.6% | intergenic (+72/‑33) | yqhD → / → dkgA | aldehyde reductase, NADPH‑dependent/2,5‑diketo‑D‑gluconate reductase A |
| RA | 3,156,591 | T→G | 12.9% | intergenic (+73/‑32) | yqhD → / → dkgA | aldehyde reductase, NADPH‑dependent/2,5‑diketo‑D‑gluconate reductase A |
| RA | 3,183,345:1 | +T | 10.3% | intergenic (+22/+468) | zupT → / ← ribB | zinc transporter/3,4‑dihydroxy‑2‑butanone‑4‑phosphate synthase |
| RA | 3,183,350 | Δ1 bp | 10.0% | intergenic (+27/+463) | zupT → / ← ribB | zinc transporter/3,4‑dihydroxy‑2‑butanone‑4‑phosphate synthase |
| RA | 3,239,609 | T→G | 9.8% | intergenic (+64/‑335) | alx → / → sstT | putative membrane‑bound redox modulator/sodium:serine/threonine symporter |
| RA | 3,239,610 | C→G | 9.6% | intergenic (+65/‑334) | alx → / → sstT | putative membrane‑bound redox modulator/sodium:serine/threonine symporter |
| RA | 3,239,611 | C→A | 9.6% | intergenic (+66/‑333) | alx → / → sstT | putative membrane‑bound redox modulator/sodium:serine/threonine symporter |
| RA | 3,250,727 | T→C | 8.9% | F56L (TTT→CTT) | yqjF → | putative quinol oxidase subunit |
| RA | 3,313,207 | G→A | 18.9% | intergenic (‑29/+135) | rbfA ← / ← infB | 30s ribosome binding factor/translation initiation factor IF‑2 |
| RA | 3,313,208 | T→A | 18.9% | intergenic (‑30/+134) | rbfA ← / ← infB | 30s ribosome binding factor/translation initiation factor IF‑2 |
| RA | 3,313,209 | T→C | 18.9% | intergenic (‑31/+133) | rbfA ← / ← infB | 30s ribosome binding factor/translation initiation factor IF‑2 |
| RA | 3,318,079 | A→T | 7.8% | intergenic (‑73/+134) | rimP ← / ← metY | ribosome maturation factor for 30S subunits/tRNA‑Met |
| RA | 3,318,080 | A→T | 7.8% | intergenic (‑74/+133) | rimP ← / ← metY | ribosome maturation factor for 30S subunits/tRNA‑Met |
| RA | 3,332,822 | G→A | 25.0% | intergenic (‑87/+40) | yhbE ← / ← rpmA | EamA family inner membrane putative transporter/50S ribosomal subunit protein L27 |
| RA | 3,332,823 | T→C | 24.7% | intergenic (‑88/+39) | yhbE ← / ← rpmA | EamA family inner membrane putative transporter/50S ribosomal subunit protein L27 |
| RA | 3,470,106 | C→T | 8.7% | intergenic (‑253/+39) | chiA ← / ← tufA | periplasmic endochitinase/translation elongation factor EF‑Tu 1 |
| RA | 3,470,107 | G→T | 8.4% | intergenic (‑254/+38) | chiA ← / ← tufA | periplasmic endochitinase/translation elongation factor EF‑Tu 1 |
| RA | 3,470,108 | A→C | 8.7% | intergenic (‑255/+37) | chiA ← / ← tufA | periplasmic endochitinase/translation elongation factor EF‑Tu 1 |
| RA | 3,470,109 | A→G | 8.7% | intergenic (‑256/+36) | chiA ← / ← tufA | periplasmic endochitinase/translation elongation factor EF‑Tu 1 |
| RA | 3,545,698 | C→A | 8.9% | I25I (ATC→ATA) | nfuA → | Fe/S biogenesis protein, putative scaffold/chaperone protein |
| RA | 3,560,455:1 | +G | 100% | intergenic (‑2/+1) | glpR ← / ← glpR | pseudogene, DNA‑binding transcriptional repressor;regulator; Energy metabolism, carbon: Anaerobic respiration; repressor of the glp operon/pseudogene, DNA‑binding transcriptional repressor;regulator; Energy metabolism, carbon: Anaerobic respiration; repressor of the glp operon |
| RA | 3,569,431 | A→G | 9.8% | I630T (ATT→ACT) | glgX ← | glycogen debranching enzyme |
| RA | 3,577,657 | A→G | 8.5% | intergenic (‑65/+74) | gntK ← / ← gntR | gluconate kinase 2/d‑gluconate inducible gluconate regulon transcriptional repressor |
| RA | 3,577,660 | C→T | 7.0% | intergenic (‑68/+71) | gntK ← / ← gntR | gluconate kinase 2/d‑gluconate inducible gluconate regulon transcriptional repressor |
| RA | 3,629,495 | A→T | 12.8% | L15Q (CTG→CAG) | rbbA ← | ribosome‑associated ATPase: ATP‑binding protein/ATP‑binding membrane protein |
| RA | 3,629,498 | T→C | 8.9% | Q14R (CAA→CGA) | rbbA ← | ribosome‑associated ATPase: ATP‑binding protein/ATP‑binding membrane protein |
| RA | 3,629,503 | G→A | 13.8% | V12V (GTC→GTT) | rbbA ← | ribosome‑associated ATPase: ATP‑binding protein/ATP‑binding membrane protein |
| RA | 3,629,506 | A→T | 14.0% | P11P (CCT→CCA) | rbbA ← | ribosome‑associated ATPase: ATP‑binding protein/ATP‑binding membrane protein |
| RA | 3,642,358 | T→A | 11.4% | intergenic (+27/+22) | dtpB → / ← rsmJ | dipeptide and tripeptide permease B/16S rRNA m(2)G1516 methyltransferase, SAM‑dependent |
| RA | 3,642,361 | T→A | 10.8% | intergenic (+30/+19) | dtpB → / ← rsmJ | dipeptide and tripeptide permease B/16S rRNA m(2)G1516 methyltransferase, SAM‑dependent |
| RA | 3,722,300 | G→T | 5.4% | intergenic (+195/+28) | sokA → / ← glyS | pseudogene, sRNA antisense regulator blocking mokA/hokA translation/glycine tRNA synthetase, beta subunit |
| RA | 3,728,215 | T→A | 7.0% | K386I (AAA→ATA) | xylB ← | xylulokinase |
| RA | 3,728,217 | A→T | 6.9% | I385I (ATT→ATA) ‡ | xylB ← | xylulokinase |
| RA | 3,728,219 | T→A | 6.9% | I385F (ATT→TTT) ‡ | xylB ← | xylulokinase |
| RA | 3,754,924 | G→T | 7.1% | intergenic (‑496/+49) | yiaW ← / ← aldB | DUF3302 family inner membrane protein/aldehyde dehydrogenase B |
| RA | 3,754,927 | A→C | 6.7% | intergenic (‑499/+46) | yiaW ← / ← aldB | DUF3302 family inner membrane protein/aldehyde dehydrogenase B |
| RA | 3,781,051 | C→G | 6.9% | intergenic (+34/‑164) | lldD → / → trmL | L‑lactate dehydrogenase, FMN‑linked/tRNA Leu mC34,mU34 2'‑O‑methyltransferase, SAM‑dependent |
| RA | 3,790,300 | A→T | 9.7% | intergenic (‑219/+20) | waaH ← / ← tdh | LPS(HepIII)‑glucuronic acid glycosyltransferase/L‑threonine 3‑dehydrogenase, NAD(P)‑binding |
| RA | 3,790,303 | A→T | 9.3% | intergenic (‑222/+17) | waaH ← / ← tdh | LPS(HepIII)‑glucuronic acid glycosyltransferase/L‑threonine 3‑dehydrogenase, NAD(P)‑binding |
| RA | 3,810,321 | T→C | 5.9% | intergenic (+17/+22) | coaD → / ← mutM | pantetheine‑phosphate adenylyltransferase/formamidopyrimidine/5‑formyluracil/ 5‑hydroxymethyluracil DNA glycosylase |
| RA | 3,810,324 | G→A | 5.9% | intergenic (+20/+19) | coaD → / ← mutM | pantetheine‑phosphate adenylyltransferase/formamidopyrimidine/5‑formyluracil/ 5‑hydroxymethyluracil DNA glycosylase |
| RA | 3,814,164 | G→A | 5.0% | G78D (GGT→GAT) | dut → | deoxyuridinetriphosphatase |
| RA | 3,815,816 | C→G | 5.2% | intergenic (‑48/+18) | pyrE ← / ← rph | orotate phosphoribosyltransferase/ribonuclease PH (defective);enzyme; Degradation of RNA; RNase PH |
| RA | 3,815,819 | C→G | 5.1% | intergenic (‑51/+15) | pyrE ← / ← rph | orotate phosphoribosyltransferase/ribonuclease PH (defective);enzyme; Degradation of RNA; RNase PH |
| RA | 3,828,334 | A→T | 5.5% | I111N (ATT→AAT) | gltS ← | glutamate transporter |
| RA | 3,832,797 | T→G | 6.2% | N581H (AAC→CAC) | yicI ← | putative alpha‑glucosidase |
| RA | 3,832,800 | C→A | 6.3% | A580S (GCG→TCG) | yicI ← | putative alpha‑glucosidase |
| RA | 3,991,334 | T→A | 8.6% | I61N (ATT→AAT) ‡ | cyaA → | adenylate cyclase |
| RA | 3,991,335 | T→A | 8.6% | I61I (ATT→ATA) ‡ | cyaA → | adenylate cyclase |
| RA | 3,993,145 | C→A | 100% | R665S (CGT→AGT) | cyaA → | adenylate cyclase |
| JC | 3,998,555 | Δ3 bp | 9.5% | coding (573‑575/2163 nt) | uvrD → | DNA‑dependent ATPase I and helicase II |
| RA | 4,015,333 | A→T | 14.3% | intergenic (+19/+21) | metE → / ← ysgA | 5‑methyltetrahydropteroyltriglutamate‑ homocysteine S‑methyltransferase/putative carboxymethylenebutenolidase |
| RA | 4,070,410 | C→A | 12.2% | intergenic (‑9/+105) | yihR ← / ← yihS | putative sulphoquinovose mutarotase/sulphoquinovose isomerase |
| RA | 4,070,413 | T→G | 14.5% | intergenic (‑12/+102) | yihR ← / ← yihS | putative sulphoquinovose mutarotase/sulphoquinovose isomerase |
| RA | 4,117,047 | G→T | 100% | S59Y (TCC→TAC) | glpK ← | glycerol kinase |
| JC | 4,130,635 | Δ13 bp | 27.0% | coding (801‑813/2433 nt) | metL → | Bifunctional aspartokinase/homoserine dehydrogenase 2 |
| RA | 4,142,509 | T→G | 16.7% | intergenic (‑288/‑21) | frwA ← / → frwC | putative PTS enzyme: Hpr, enzyme I and II components/putative enzyme IIC component of PTS |
| RA | 4,142,512 | C→A | 16.7% | intergenic (‑291/‑18) | frwA ← / → frwC | putative PTS enzyme: Hpr, enzyme I and II components/putative enzyme IIC component of PTS |
| RA | 4,148,049 | C→G | 12.8% | G90A (GGC→GCC) | yijO ← | AraC family putative transcriptional activator |
| RA | 4,177,171 | T→A | 22.8% | intergenic (+43/‑187) | tufB → / → secE | translation elongation factor EF‑Tu 2/preprotein translocase membrane subunit |
| RA | 4,177,172 | T→A | 21.6% | intergenic (+44/‑186) | tufB → / → secE | translation elongation factor EF‑Tu 2/preprotein translocase membrane subunit |
| RA | 4,183,165 | G→A | 100% | E641K (GAA→AAA) | rpoB → | RNA polymerase, beta subunit |
| RA | 4,227,550 | G→A | 8.6% | intergenic (+39/‑181) | metH → / → yjbB | homocysteine‑N5‑methyltetrahydrofolate transmethylase, B12‑dependent/putative Na+/Pi‑cotransporter |
| RA | 4,227,555 | A→T | 7.9% | intergenic (+44/‑176) | metH → / → yjbB | homocysteine‑N5‑methyltetrahydrofolate transmethylase, B12‑dependent/putative Na+/Pi‑cotransporter |
| RA | 4,227,560 | T→C | 7.4% | intergenic (+49/‑171) | metH → / → yjbB | homocysteine‑N5‑methyltetrahydrofolate transmethylase, B12‑dependent/putative Na+/Pi‑cotransporter |
| RA | 4,262,250 | G→C | 9.6% | G194G (GGG→GGC) | dusA → | tRNA‑dihydrouridine synthase A |
| RA | 4,262,255 | G→C | 9.6% | S196T (AGC→ACC) | dusA → | tRNA‑dihydrouridine synthase A |
| RA | 4,291,512 | G→A | 11.3% | M1M (GTG→ATG) †‡ | nrfE → | heme lyase (NrfEFG) for insertion of heme into c552, subunit NrfE |
| RA | 4,291,513 | T→C | 11.3% | M1A (GTG→GCG) †‡ | nrfE → | heme lyase (NrfEFG) for insertion of heme into c552, subunit NrfE |
| RA | 4,296,060 | C→T | 20.3% | intergenic (+266/+376) | gltP → / ← yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| RA | 4,296,380:1 | +CG | 100% | intergenic (+586/+56) | gltP → / ← yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| RA | 4,362,528 | G→A | 12.2% | intergenic (‑175/+23) | yjdQ ← / ← pheU | pseudogene, P4‑like integrase remnant/tRNA‑Phe |
| RA | 4,362,529 | T→C | 12.2% | intergenic (‑176/+22) | yjdQ ← / ← pheU | pseudogene, P4‑like integrase remnant/tRNA‑Phe |
| RA | 4,409,402 | Δ1 bp | 11.7% | coding (128/732 nt) | rlmB → | 23S rRNA mG2251 2'‑O‑ribose methyltransferase, SAM‑dependent |
| RA | 4,409,407 | T→A | 12.5% | S45T (TCT→ACT) | rlmB → | 23S rRNA mG2251 2'‑O‑ribose methyltransferase, SAM‑dependent |
| RA | 4,409,410:1 | +A | 13.0% | coding (136/732 nt) | rlmB → | 23S rRNA mG2251 2'‑O‑ribose methyltransferase, SAM‑dependent |
| RA | 4,422,887 | G→A | 9.3% | A14A (GCG→GCA) | ulaE → | L‑xylulose 5‑phosphate 3‑epimerase |
| RA | 4,424,465 | G→T | 8.3% | intergenic (+79/+51) | ulaF → / ← yjfY | L‑ribulose 5‑phosphate 4‑epimerase/YhcN family protein, periplasmic |
| RA | 4,424,468 | A→C | 8.3% | intergenic (+82/+48) | ulaF → / ← yjfY | L‑ribulose 5‑phosphate 4‑epimerase/YhcN family protein, periplasmic |
| RA | 4,447,964 | T→A | 10.3% | L24* (TTA→TAA) | ytfP → | GGCT‑like protein |
| RA | 4,472,434 | G→A | 17.0% | R34* (CGA→TGA) | pyrL ← | pyrBI operon leader peptide |
| RA | 4,472,437 | T→C | 16.7% | N33D (AAT→GAT) | pyrL ← | pyrBI operon leader peptide |
| RA | 4,496,511 | A→G | 8.5% | intergenic (+22/‑164) | leuX → / → intB | tRNA‑Leu/pseudogene, integrase homology;IS, phage, Tn; Phage‑related functions and prophages; KpLE2 phage‑like element; P4‑like integrase |
| RA | 4,496,512 | C→T | 8.3% | intergenic (+23/‑163) | leuX → / → intB | tRNA‑Leu/pseudogene, integrase homology;IS, phage, Tn; Phage‑related functions and prophages; KpLE2 phage‑like element; P4‑like integrase |
| RA | 4,520,500 | Δ1 bp | 7.4% | intergenic (‑176/+171) | yjhU ← / ← yjhF | putative DNA‑binding transcriptional regulator; KpLE2 phage‑like element/putative transporter |
| RA | 4,520,504:1 | +T | 7.1% | intergenic (‑180/+167) | yjhU ← / ← yjhF | putative DNA‑binding transcriptional regulator; KpLE2 phage‑like element/putative transporter |
| RA | 4,604,753 | T→A | 14.0% | S198R (AGT→AGA) | bglJ → | bgl operon transcriptional activator |
| RA | 4,604,754 | T→A | 15.4% | S199T (TCT→ACT) | bglJ → | bgl operon transcriptional activator |
| RA | 4,608,604 | C→G | 9.3% | I140M (ATC→ATG) | rimI → | ribosomal‑protein‑S18‑alanine N‑acetyltransferase |
| RA | 4,608,607 | C→G | 9.3% | I141M (ATC→ATG) | rimI → | ribosomal‑protein‑S18‑alanine N‑acetyltransferase |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3423783–3424234 | 3424545–3424239 | 6–763 | 14 [13] | [13] 17 | [rrfD]–[rrlD] | [rrfD],[rrlD] |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 233792 = | 34 (0.780) | 4 (0.090) | 4/250 | NT | 11.2% | coding (164/1359 nt) | mltD | putative membrane‑bound lytic murein transglycosylase D |
| ? | NC_000913 | 233828 = | 30 (0.700) | coding (128/1359 nt) | mltD | putative membrane‑bound lytic murein transglycosylase D | |||||
| * | ? | NC_000913 | 412077 = | 38 (0.870) | 5 (0.120) | 4/240 | NT | 12.7% | coding (405/1185 nt) | araJ | L‑arabinose‑inducible putative transporter, MFS family |
| ? | NC_000913 | 412119 = | 33 (0.800) | coding (363/1185 nt) | araJ | L‑arabinose‑inducible putative transporter, MFS family | |||||
| * | ? | NC_000913 | 1207790 = | 13 (0.300) | 18 (0.470) | 18/224 | NT | 59.6% | coding (290/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | 1209619 = | 13 (0.340) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | = 1207805 | 12 (0.270) | 12 (0.310) | 12/224 | NT | 50.5% | coding (305/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | = 1209602 | 13 (0.340) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | = 1299498 | 0 (0.000) | 40 (0.940) | 37/248 | NT | 100% | intergenic (+253/‑1684) | ychE/oppA | UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein |
| ? | NC_000913 | 1300698 = | 0 (0.000) | intergenic (+1453/‑484) | ychE/oppA | UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein | |||||
| * | ? | NC_000913 | = 1463445 | 47 (1.070) | 5 (0.120) | 4/242 | NT | 10.3% | intergenic (+7/‑94) | paaK/paaX | phenylacetyl‑CoA ligase/transcriptional repressor of phenylacetic acid degradation paa operon, phenylacetyl‑CoA inducer |
| ? | NC_000913 | = 1463482 | 43 (1.040) | intergenic (+44/‑57) | paaK/paaX | phenylacetyl‑CoA ligase/transcriptional repressor of phenylacetic acid degradation paa operon, phenylacetyl‑CoA inducer | |||||
| * | ? | NC_000913 | 3588334 = | 27 (0.620) | 3 (0.070) | 3/242 | NT | 10.3% | coding (847/1071 nt) | ugpC | sn‑glycerol‑3‑phosphate ABC transporter ATPase |
| ? | NC_000913 | 3588367 = | 27 (0.650) | coding (814/1071 nt) | ugpC | sn‑glycerol‑3‑phosphate ABC transporter ATPase | |||||
| * | ? | NC_000913 | 3721045 = | 66 (1.510) | 135 (3.100) | 95/254 | NT | 71.5% | noncoding (413/1443 nt) | IS150 | repeat region |
| ? | NC_000913 | = 3839774 | 42 (0.970) | coding (220/819 nt) | nlpA | cytoplasmic membrane lipoprotein‑28 | |||||
| * | ? | NC_000913 | = 4296167 | 10 (0.230) | 6 (0.140) | 5/242 | NT | 38.8% | noncoding (333/600 nt) | RIP321 (repetitive extragenic palindromic) element; contains 11 REP sequences and 4 IHF sites | RIP321 (repetitive extragenic palindromic) element; contains 11 REP sequences and 4 IHF sites |
| ? | NC_000913 | = 4296250 | NA (NA) | noncoding (416/600 nt) | RIP321 (repetitive extragenic palindromic) element; contains 11 REP sequences and 4 IHF sites | RIP321 (repetitive extragenic palindromic) element; contains 11 REP sequences and 4 IHF sites | |||||
| * | ? | NC_000913 | 4377614 = | 31 (0.710) | 4 (0.100) | 4/244 | NT | 12.0% | coding (109/534 nt) | blc | outer membrane lipoprotein cell division and growth lipocalin |
| ? | NC_000913 | 4377646 = | 29 (0.690) | coding (77/534 nt) | blc | outer membrane lipoprotein cell division and growth lipocalin | |||||