Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A124 F1 I1 R1
|
18 |
228.8 |
14151462 |
95.4% |
13500494 |
76.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
REL606 |
3,875,632 |
(T)7→8 |
intergenic (‑66/+287) |
glmU ← / ← atpC |
bifunctional N‑acetylglucosamine‑1‑phosphate uridyltransferase/glucosamine‑1‑phosphate acetyltransferase/F0F1 ATP synthase subunit epsilon |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | REL606 | 3,875,625 | 1 | . | T | 97.9%
| 597.0
/ 2.6
| 144 | intergenic (‑59/+294) | glmU/atpC | bifunctional N‑acetylglucosamine‑1‑phosphate uridyltransferase/glucosamine‑1‑phosphate acetyltransferase/F0F1 ATP synthase subunit epsilon |
| Reads supporting (aligned to +/- strand): ref base . (0/3); new base T (53/88); total (53/91) |
| Fisher's exact test for biased strand distribution p-value = 2.97e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 170 total aligned reads displayed.
ATAGCATTATTCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACC‑GCTTCACCTTGAAAAAACTACA‑TTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGAAAGCGCC > REL606/3875550‑3875695
|
aTAGCATTATTCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACC‑GCTTCACCTTGAAAAAACTACa < 2:330430/76‑1 (MQ=255)
tAGCATTATTCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACC‑GCTTCACCTTGAAAAAACTACA‑t > 2:6279897/1‑76 (MQ=255)
aGCATTATTCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACC‑GCTTCACCTTGAAAAAACTACA‑tt > 1:4639744/1‑76 (MQ=255)
gCATTATTCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACC‑GCTTCACCTTGAAAAAACTACA‑ttt < 1:5348800/76‑1 (MQ=255)
cATTATTCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACC‑GCTTCACCTTGAAAAAACTACA‑tttt > 2:3398184/1‑76 (MQ=255)
cATTATTCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACC‑GCTTCACCTTGAAAAAACTACA‑tttt > 1:6606076/1‑76 (MQ=255)
ttattCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACC‑GCTTCACCTTGAAAAAACTACA‑tttttt > 2:4332913/1‑76 (MQ=255)
ttattCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACC‑GCTTCACCTTGAAAAAACTACA‑tttttt < 1:1937877/76‑1 (MQ=255)
attCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACC‑GCTTCACCTTGAAAAAACTACA‑tttttttt > 2:4261334/1‑75 (MQ=255)
attCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACC‑GCTTCACCTTGAAAAAACTACA‑tttttttt > 2:1290348/1‑75 (MQ=255)
ttCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACC‑GCTTCACCTTGAAAAAACTACA‑ttttttttc < 1:4415930/76‑3 (MQ=255)
aCATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACC‑GCTTCACCTTGAAAAAACTACATTTTTTTTCATCg < 2:1177215/76‑1 (MQ=255)
aCATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACC‑GCTTCACCTTGAAAAAACTACATTTTTTTTCATCg < 2:3214252/76‑1 (MQ=255)
aCATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACC‑GCTTCACCTTGAAAAAACTACATTTTTTTTCATCg > 2:5062254/1‑76 (MQ=255)
cATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACC‑GCTTCACCTTGAAAAAACTACATTTTTTTTCATCGt > 1:3119133/1‑76 (MQ=255)
cATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACC‑GCTTCACCTTGAAAAAACTACATTTTTTTTCATCGt > 2:2170078/1‑76 (MQ=255)
tACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACC‑GCTTCACCTTGAAAAAACTACATTTTTTTTCATCGTGa > 1:2713664/1‑76 (MQ=255)
cgcgTCCTGACTGTAATTTGAGAACGAATTTAAACC‑GCTTCACCTTGAAAAAACTACATTTTTTTTCATCGTGaaa < 2:1308243/76‑1 (MQ=255)
cgcgTCCTGACTGTAATTTGAGAACGAATTTAAACC‑GCTTCACCTTGAAAAAACTACATTTTTTTTCATCGTGaaa < 1:5565737/76‑1 (MQ=255)
gcgTCCTGACTGTAATTTGAGAACGAATTTAAACC‑GCTTCACCTTGAAAAAACTACATTTTTTTTCATCGTGAAAt > 1:726954/1‑76 (MQ=255)
gcgTCCTGACTGTAATTTGAGAACGAATTTAAACC‑GCTTCACCTTGAAAAAACTACATTTTTTTTCATCGTGAAAt < 1:6947362/76‑1 (MQ=255)
gcgTCCGGACTGTAATGTGAGACCGAATTTAAACC‑GCGTCACCTTGAAAAAACTACATTTTTTTTCATCGTGAAAt < 2:875581/76‑1 (MQ=255)
cgTCCTGACTGTAATTTGAGAACGAATTTAAACC‑GCTTCACCTTGAAAAAACTACATTTTTTTTCATCGTGAAATg < 1:1025755/76‑1 (MQ=255)
cgTCCTGACTGTAATTTGAGAACGAATTTAAACC‑GCTTCACCTTGAAAAAACTACATTTTTTTTCATCGTGAAATg > 2:2372707/1‑76 (MQ=255)
gTCCTGACTGTAATTTGAGAACGAATTTAAACC‑GCTTCACCTTGAAAAAACTACATTTTTTTTCATCGTGAAATgg < 2:5767673/76‑1 (MQ=255)
gTCCTGACTGTAATTTGAGAACGAATTTAAACC‑GCTTCACCTTGAAAAAACTACATTTTTTTTCATCGTGAAATgg < 1:6014635/76‑1 (MQ=255)
gTCCTGACTGTAATTTGAGAACGAATTTAAACC‑GCTTCACCTTGAAAAAACTACATTTTTTTTCATCGTGAAATgg > 2:4885118/1‑76 (MQ=255)
tCCTGACTGTAATTTGAGAACGAATTTAAACC‑GCTTCACCTTGCAAAAACTACATTTTTTTTCATCGTGAAATGGa < 2:5611623/76‑1 (MQ=255)
tCCTGACTGTAATTTGAGAACGAATTTAAACC‑GCTTCACCTTGAAAAAACTACATTTTTTTTCATCGTGAAATGGa < 2:6913824/76‑1 (MQ=255)
tCCTGACTGTAATTTGAGAACGAATTTAAACC‑GCTTCACCTTGAAAAAACTACATTTTTTTTCATCGTGAAATGGa > 2:337094/1‑76 (MQ=255)
ccTGACTGTAATTTGAGAACGAATTTAAACC‑GCTTCACCTTGAAAAAACTACATTTTTTTTCATCGTGAAATGGAc > 1:28461/1‑76 (MQ=255)
ccTGACTGTAATTTGAGAACGAATTTAAACC‑GCTTCACCTTGAAAAAACTACATTTTTTTTCATCGTGAAATGGAc > 1:3253542/1‑76 (MQ=255)
cTGACTGTAATTTGAGAACGAATTTAAACC‑GCTTCACCTTGAAAAAACTACATTTTTTTTCATCGTGAAATGGACa < 1:2492875/76‑1 (MQ=255)
cTGACTGTAATTTGAGAACGAATTTAAACC‑GCTTCACCTTGAAAAAACTACATTTTTTTTCATCGTGAAATGGACa < 1:5129670/76‑1 (MQ=255)
gACTGTAATTTGAGAACGAATTTAAACC‑GCTTCACCTTGAAAAAACTACATTTTTTTTCATCGTGAAATGGACaga < 1:6203778/76‑1 (MQ=255)
gACTGTAATTTGAGAACGAATTTAAACC‑GCTTCACCTTGAAAAAACTACATTTTTTTTCATCGTGAAATGGACaga < 2:4618949/76‑1 (MQ=255)
cTGTAATTTGAGAACGAATTTAAACC‑GCTTCACCTTGAAAAAACTACATTTTTTTTCATCGTGAAATGGACAGAgg < 1:5882493/76‑1 (MQ=255)
tGTAATTTGAGAACGAATTTAAACC‑GCTTCACCTTGAAAAAACTACATTTTTTTTCATCGTGAAATGGACAGAGGa > 2:6880667/1‑76 (MQ=255)
tGTAATTTGAGAACGAATTTAAACC‑GCTTCACCTTGAAAAAACTACATTTTTTTTCATCGTGAAATGGACAGAGGa < 1:4931752/76‑1 (MQ=255)
gTAATTTGAGAACGAATTTAAACC‑GCTTCACCTTGAAAAAACTACATTTTTTTTCATCGTGAAATGGACAGAGGAt > 1:1547076/1‑76 (MQ=255)
tAATTTGAGAACGAATTTAAACC‑GCTTCACCTTGAAAAAACTACATTTTTTTTCATCGTGAAATGGACAGAGGATa < 2:2091070/76‑1 (MQ=255)
aTTTGAGAACGAATTTAAACC‑GCTTCACCTTGAAAAAACTACATTTTTTTTCATCGTGAAATGGACAGAGGATaaa < 1:3923222/76‑1 (MQ=255)
aTTTGAGAACGAATTTAAACC‑GCTTCACCTTGAAAAAACTACATTTTTTTTCATCGTGAAATGGACAGAGGATaaa < 2:4014736/76‑1 (MQ=255)
tttGAGAACGAATTTAAACC‑GCTTCACCTTGAAAAAACTACATTTTTTTTCATCGTGAAATGGACAGAGGATAAAt > 2:2005360/1‑76 (MQ=255)
ttGAGAACGAATTTAAACC‑GCTTCACCTTGAAAAAACTACATTTTTTTTCATCGTGAAATGGACAGAGGATAAAtt < 2:4674031/76‑1 (MQ=255)
ttGAGAACGAATTTAAACC‑GCTTCACCTTGAAAAAACTACATTTTTTTTCATCGTGAAATGGACAGAGGATAAAtt < 2:5125136/76‑1 (MQ=255)
tGAGAACGAATTTAAACC‑GCTTCACCTTGAAAAAACTACATTTTTTTTCATCGTGAAATGGACAGAGGATAAATTg < 1:6296326/76‑1 (MQ=255)
tGAGAACGAATTTAAACC‑GCTTCACCTTGAAAAAACTACATTTTTTTTCATCGTGAAATGGACAGAGGATAAATTg < 2:482080/76‑1 (MQ=255)
tGAGAACGAATTTAAACC‑GCTTCACCTTGAAAAAACTACATTTTTTTTCATCGTGAAATGGACAGAGGATAAATTg > 1:2809282/1‑76 (MQ=255)
tGAGAACGAATTTAAACC‑GCTTCACCTTGAAAAAACTACATTTTTTTTCATCGTGAAATGGACAGAGGATAAATTg > 2:5574944/1‑76 (MQ=255)
agaACGAATTTAAACC‑GCTTCACCTTGAAAAAACTACATTTTTTTTCATCGTGAAATGGACAGAGGATAAATTGtt < 2:5714392/76‑1 (MQ=255)
agaACGAATTTAAACC‑GCTTCACCTTGAAAAAACTACATTTTTTTTCATCGTGAAATGGACAGAGGATAAATTGtt < 2:3799604/76‑1 (MQ=255)
agaACGAATTTAAACC‑GCTTCACCTTGAAAAAACTACATTTTTTTTCATCGTGAAATGGACAGAGGATAAATTGtt < 2:6212608/76‑1 (MQ=255)
aCGAATTTAAACC‑GCTTCACCTTGAAAAAACTACATTTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCaa < 2:3660080/76‑1 (MQ=255)
aCGAATTTAAACC‑GCTTCACCTTGAAAAAACTACATTTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCaa < 2:2292909/76‑1 (MQ=255)
cGAATTTAAACC‑GCTTCACCTTGAAAAAACTACATTTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAAt > 1:4149435/1‑76 (MQ=255)
cGAATTTAAACC‑GCTTCACCTTGAAAAAACTACATTTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAAt < 1:4448204/76‑1 (MQ=255)
cGAATTTAAACC‑GCTTCACCTTGAAAAAACTACATTTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAAt < 1:4728915/76‑1 (MQ=255)
gaTTTAAACCGGCTCCCCCTGGAAAAACTTCCT‑TTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATaa < 2:2693253/75‑1 (MQ=255)
aaTTTAAACC‑GCTTCACCTTGAAAAAACTACATTTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATaa < 2:67255/76‑1 (MQ=255)
aTTTAAACC‑GCTTCACCTTGAAAAAACTACATTTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAAc < 2:6245600/76‑1 (MQ=255)
aTTTAAACC‑GCTTCACCTTGAAAAAACTACATTTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAAc < 1:1989109/76‑1 (MQ=255)
tttAAACC‑GCTTCACCTTGAAAAAACTACATTTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACg > 1:5451981/1‑76 (MQ=255)
tttAAACC‑GCTTCACCTTGAAAAAACTACATTTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACg > 1:3152923/1‑76 (MQ=255)
ttAAACC‑GCTTCACCTTGAAAAAACTACATTTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACgg > 1:556381/1‑76 (MQ=255)
tAAACC‑GCTTCACCTTGAAAAAACTACATTTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGa < 1:1503993/76‑1 (MQ=255)
tAAACC‑GCTTCACCTTGAAAAAACTACATTTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGa > 2:292515/1‑76 (MQ=255)
tAAACC‑GCTTCACCTTGAAAAAACTACATTTTTTTTCATCATGAAATGGACAGAGGATAAATTGTTCAATAACGGa > 1:6437946/1‑76 (MQ=255)
aaaCC‑GCTTCACCTTGAAAAAACTACATTTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGAt < 1:1928883/76‑1 (MQ=255)
aaaCC‑GCTTCACCTTGAAAAAACTACATTTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGAt < 2:3348639/76‑1 (MQ=255)
aaaCC‑GCTTCACCTTGAAAAAACTACATTTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGAt > 2:3048038/1‑76 (MQ=255)
aaaCC‑GCTTCACCTTGAAAAAACTACATTTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGAt > 1:6277618/1‑76 (MQ=255)
aaCC‑GCTTCACCTTGAAAAAACTACATTTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGAtt > 1:4201250/1‑76 (MQ=255)
aaCC‑GCTTCACCTTGAAAAAACTACATTTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGAtt < 2:3415388/76‑1 (MQ=255)
aCC‑GCTTCACCTTGAAAAAACTACATTTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTa < 1:1062575/76‑1 (MQ=255)
cc‑GCTTCACCTTGAAAAAACTACATTTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTAt < 2:1746402/76‑1 (MQ=255)
cc‑GCTTCACCTTGAAAAAACTACATTTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTAt < 1:3593724/76‑1 (MQ=255)
cc‑GCTTCACCTTGAAAAAACTACATTTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTAt < 2:5138875/76‑1 (MQ=255)
cTTCACCTTGAAAAAACTACATTTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATccc < 1:6621357/76‑1 (MQ=255)
ttCACCTTGAAAAAACTACATTTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATcccc < 1:5731517/76‑1 (MQ=255)
ttCACCTTGAAAAAACTACATTTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATcccc < 2:440056/76‑1 (MQ=255)
cACCTTGAAAAAACTACATTTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGc > 2:6444861/1‑76 (MQ=255)
ccTTGAAAAAACTACATTTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTg < 2:2501731/76‑1 (MQ=255)
cTTGAAAAAACTACATTTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGa < 1:1760330/76‑1 (MQ=255)
cTTGAAAAAACTACATTTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGa > 2:5219670/1‑76 (MQ=255)
ttGAAAAAACTACATTTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGAc < 1:5626510/76‑1 (MQ=255)
tGAAAAAACTACATTTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACg > 1:2875476/1‑76 (MQ=255)
tGAAAAAACTACATTTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACg > 1:4615845/1‑76 (MQ=255)
tGAAAAAACTACATTTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACg < 1:892021/76‑1 (MQ=255)
tGAAAAAACTACATTTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACg < 2:6165715/76‑1 (MQ=255)
tGAAAAAACTACATTTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACg > 1:1436526/1‑76 (MQ=255)
gAAAAAACTACATTTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGa < 1:5305154/76‑1 (MQ=255)
gAAAAAACTACATTTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGa > 2:1839760/1‑76 (MQ=255)
aaaaaCTACATTTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGaaa > 2:4489023/1‑76 (MQ=255)
aaaaCTACATTTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGAAAg < 1:2706035/76‑1 (MQ=255)
aaaaCTACATTTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGAAAg < 2:149080/76‑1 (MQ=255)
aaaCTACATTTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGAAAgc > 1:677872/1‑76 (MQ=255)
aaCTACATTTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGAAAgcg < 1:2992130/76‑1 (MQ=255)
aaCTACATTTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGAAAgcg > 1:6852385/1‑76 (MQ=255)
aCTACATTTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGAAAgcgc > 2:6045706/1‑76 (MQ=255)
|
ATAGCATTATTCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACC‑GCTTCACCTTGAAAAAACTACA‑TTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGAAAGCGCC > REL606/3875550‑3875695
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
