Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A106 F1 I1 R1
|
16 |
286.4 |
19211214 |
90.7% |
17424571 |
75.8 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
REL606 |
3,875,632 |
(T)7→8 |
intergenic (‑66/+287) |
glmU ← / ← atpC |
bifunctional N‑acetylglucosamine‑1‑phosphate uridyltransferase/glucosamine‑1‑phosphate acetyltransferase/F0F1 ATP synthase subunit epsilon |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | REL606 | 3,875,625 | 1 | . | T | 98.8%
| 630.6
/ 0.3
| 160 | intergenic (‑59/+294) | glmU/atpC | bifunctional N‑acetylglucosamine‑1‑phosphate uridyltransferase/glucosamine‑1‑phosphate acetyltransferase/F0F1 ATP synthase subunit epsilon |
| Reads supporting (aligned to +/- strand): ref base . (1/1); new base T (87/71); total (88/72) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.99e-01 |
Only 100 of 246 total aligned reads displayed.
ATAGCATTATTCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑TTTT‑TTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGAAAGCGCC > REL606/3875550‑3875695
|
aTAGCATTATTCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACa > 2:500032/1‑76 (MQ=255)
aTAGCATTATTCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACa > 2:2769030/1‑76 (MQ=255)
tAGCATTATTCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGACAAAACTACA‑t > 2:2252376/1‑76 (MQ=255)
tAGCATTATTCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑t > 1:5339783/1‑76 (MQ=255)
tAGCATTATTCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑t < 2:3454813/76‑1 (MQ=255)
tAGCATTATTCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑t > 1:2588554/1‑76 (MQ=255)
aGCATTATTCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑tt > 1:6179610/1‑76 (MQ=255)
cATTATTTAACATACGCGTCCTGCCTGTAATTTGAGAACGAATTTAAACAGCTTCACCTTGAAAAAACTACA‑tttt > 2:5299104/1‑76 (MQ=255)
cATTATTCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑tttt < 2:4901180/76‑1 (MQ=255)
cATTATTCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑tttt < 1:397625/76‑1 (MQ=255)
cATTATTCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑tttt < 2:2928718/76‑1 (MQ=255)
cATTATTCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑tttt > 1:1954712/1‑76 (MQ=255)
cATTATTCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑tttt < 2:1970378/76‑1 (MQ=255)
cATTATTCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑tttt < 1:768360/76‑1 (MQ=255)
cATTATTCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑tttt > 2:9198658/1‑76 (MQ=255)
attattCAACATACGCGTCC‑GACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑tttt‑tt < 2:8539925/76‑1 (MQ=255)
ttattCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑tttt‑tt > 2:7328615/1‑76 (MQ=255)
ttattCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑tttt‑tt > 2:3955253/1‑76 (MQ=255)
ttattCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑tttt‑tt > 2:4416243/1‑76 (MQ=255)
ttattCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑tttt‑tt > 2:5365045/1‑76 (MQ=255)
ttattCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑tttt‑tt > 2:4678929/1‑76 (MQ=255)
ttattCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑tttt‑tt > 2:4810504/1‑76 (MQ=255)
ttattCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑tttt‑tt > 1:822338/1‑76 (MQ=255)
attCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑tttt‑tttt < 2:1441662/76‑2 (MQ=255)
ttCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑tttt‑ttttc < 1:8013607/76‑3 (MQ=255)
ttCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑tttt‑ttttc < 1:3872672/76‑3 (MQ=255)
ttCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑tttt‑ttttc < 1:1863585/76‑3 (MQ=255)
ttCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑tttt‑ttttc < 1:6576930/76‑3 (MQ=255)
tACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTT‑TTTCATCGTGa < 2:8059890/76‑1 (MQ=255)
aCGCTTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTT‑TTTCATCGTGaa < 2:7434077/76‑1 (MQ=255)
aCGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTT‑TTTCATCGTGaa < 2:5438013/76‑1 (MQ=255)
cgcgTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTT‑TTTCATCGTGaaa > 1:35525/1‑76 (MQ=255)
cgcgTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTT‑TTTCATCGTGaaa > 1:6016651/1‑76 (MQ=255)
gcgTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTT‑TTTCATCGTGAAAt < 2:649331/76‑1 (MQ=255)
cgTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTT‑TTTCATCGTGAAATg > 2:6742107/1‑76 (MQ=255)
gTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTT‑TTTCATCGTGAAATgg > 1:6898926/1‑76 (MQ=255)
gTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTT‑TTTCATCGTGAAATgg > 1:3489298/1‑76 (MQ=255)
ccTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTT‑TTTCATCGTGAAATGGAc < 1:1158308/76‑1 (MQ=255)
ccTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTT‑TTTCATCGTGAAATGGAc > 2:1583373/1‑76 (MQ=255)
ccTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑TTTT‑TTTCATCGTGAAATGGACa > 1:4472792/1‑76 (MQ=255)
cTGACTGTACTTTGGGAACGAATTTAAACCGCTTTACCTTGAAACAACTACA‑TTTTCTTTCATAGTGAAATGGACa > 2:6217856/1‑76 (MQ=255)
tGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTT‑TTTCATCGTGAAATGGACag > 2:4199277/1‑76 (MQ=255)
tGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTT‑TTTCATCGTGAAATGGACag > 1:5552148/1‑76 (MQ=255)
tGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTT‑TTTCATCGTGAAATGGACag < 2:4649716/76‑1 (MQ=255)
tGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTT‑TTTCATCGTGAAATGGACag < 1:49555/76‑1 (MQ=255)
tGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTT‑TTTCATCGTGAAATGGACag < 1:7942106/76‑1 (MQ=255)
gACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTT‑TTTCATCGTGAAATGGACaga < 1:4273273/76‑1 (MQ=255)
gACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTT‑TTTCATCGTGAAATGGACaga < 1:3822021/76‑1 (MQ=255)
aCTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTT‑TTTCATCGTGAAATGGACagag > 1:9172482/1‑76 (MQ=255)
aCTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTT‑TTTCATCGTGAAATGGACagag < 1:6302846/76‑1 (MQ=255)
aCTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTT‑TTTCATCGTGAAATGGACagag > 1:6361026/1‑76 (MQ=255)
cTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTT‑TTTCATCGTGAAATGGACAGAgg > 2:8895217/1‑76 (MQ=255)
tGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTT‑TTTCATCGTGAAATGGACAGAGGa < 2:5178164/76‑1 (MQ=255)
tGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTT‑TTTCATCGTGAAATGGACAGAGGa < 2:1352713/76‑1 (MQ=255)
tAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTT‑TTTCATCGTGAAATGGACAGAGGATa > 2:9114525/1‑76 (MQ=255)
tAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTT‑TTTCATCGTGAAATGGACAGAGGATa < 2:2155010/76‑1 (MQ=255)
aaTTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTT‑TTTCATCGTGAAATGGACAGAGGATaa > 1:1005796/1‑76 (MQ=255)
aaTTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTT‑TTTCATCGTGAAATGGACAGAGGATaa > 1:2944118/1‑76 (MQ=255)
aaTTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTT‑TTTCATCGTGAAATGGACAGAGGATaa > 1:4426539/1‑76 (MQ=255)
aaTTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTT‑TTTCATCGTGAAATGGACAGAGGATaa > 1:2032486/1‑76 (MQ=255)
aaTTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTT‑TTTCATCGTGAAATGGACAGAGGATaa > 1:6132494/1‑76 (MQ=255)
aaTTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTT‑TTTCATCGTGAAATGGACAGAGGATaa > 1:8298137/1‑76 (MQ=255)
aaTTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTT‑TTTCATCGTGAAATGGACAGAGGATaa > 2:1211007/1‑76 (MQ=255)
tttGAGAACGAATTTAATCCGCTTCACCTTGAAAAAACTACATTTTT‑TTTCATCGTGAAATGGACAGAGGATAAAt > 2:8118629/1‑76 (MQ=255)
tGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTT‑TTTCATCGTGAAATGGACAGAGGATAAATTg > 1:5090102/1‑76 (MQ=255)
tGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTT‑TTTCATCGTGAAATGGACAGAGGATAAATTg > 1:9376586/1‑76 (MQ=255)
gagaACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTT‑TTTCATCGTGAAATGGACAGAGGATAAATTGt < 2:1462169/76‑1 (MQ=255)
cGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTT‑TTTCATCGTGAAATGGACAGAGGATAAATTGTTCAAt < 1:919347/76‑1 (MQ=255)
aaTTTAAACCGCTTCACCTTGAAAAAACTACATTTTT‑TTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATaa < 2:2354571/76‑1 (MQ=255)
aaTTTAAACCGCTTCACCTTGAAAAAACTACATTTTT‑TTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATaa > 1:4261495/1‑76 (MQ=255)
aTTTAAACCGCTTCACCTTGAAAAAACTACATTTTT‑TTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAAc > 1:5477147/1‑76 (MQ=255)
aTTTAAACCGCTTCACCTTGAAAAAACTACATTTTT‑TTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAAc < 1:2393927/76‑1 (MQ=255)
aTTTAAACCGCTTCACCTTGAAAAAACTACATTTTT‑TTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAAc < 1:2442868/76‑1 (MQ=255)
ttAAACCGCTTCACCTTGAAAAAACTACATTTTT‑TTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACgg < 1:6223510/76‑1 (MQ=255)
aaaCCGCTTCACCTTGAAAAAACTACATTTTT‑TTTCATCGTGAACTGGACAGAGGATAAATTGTTCACTAACGGAt > 1:1505179/1‑76 (MQ=255)
aaaCCGCTTCACCTTGAAAAAACTACATTTTT‑TTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGAt < 1:3228738/76‑1 (MQ=255)
aaaCCGCTTCACCTTGAAAAAACTACATTTTT‑TTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGAt < 2:8716428/76‑1 (MQ=255)
aaaCCGCTTCACCTTGAAAAAACTACATTTTT‑TTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGAt < 2:3877148/76‑1 (MQ=255)
aaaCCGCTTCACCTTGAAAAAACTACATTTTT‑TTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGAt > 1:7209946/1‑76 (MQ=255)
aaaCCGCTTCACCTTGAAAAAACTACATTTTT‑TTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGAt > 1:1474692/1‑76 (MQ=255)
aCCGCTTCACCTTGAAAAAACTACATTTTT‑TTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTa < 2:9376586/76‑1 (MQ=255)
gCTTCACCTTGAAAAAACTACATTTTT‑TTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATcc > 1:695973/1‑76 (MQ=255)
gCTTCACCTTGAAAAAACTACATTTTT‑TTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATca < 2:7827629/76‑2 (MQ=255)
ttCACCTTGAAAAAACTACATTTTT‑TTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATcccc < 1:6162085/76‑1 (MQ=255)
ttCACCTTGAAAAAACTACATTTTT‑TTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATcccc > 1:8890535/1‑76 (MQ=255)
ccTTGAAAAAACTACATTTTT‑TTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTg > 1:8692632/1‑76 (MQ=255)
cTTGAAAAAACTACATTTTT‑TTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGa > 2:8077042/1‑76 (MQ=255)
cTTGAAAAAACTACATTTTT‑TTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGa > 1:1339407/1‑76 (MQ=255)
ttGAAAAAACTACATTTTT‑TTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGAc < 1:5977048/76‑1 (MQ=255)
gAAAAAACTACATTTTT‑TTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGa > 1:4799532/1‑76 (MQ=255)
gAAAAAACTACATTTTT‑TTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGa < 2:5725514/76‑1 (MQ=255)
aaaaaaCTACATTTTT‑TTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGaa < 2:6772620/76‑1 (MQ=255)
aaaaaaCTACATTTTT‑TTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGaa < 2:2056278/76‑1 (MQ=255)
aaaaaaCTACATTTTT‑TTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGaa < 2:6008263/76‑1 (MQ=255)
aaaaCTACATTTTT‑TTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGAAAg < 2:3403709/76‑1 (MQ=255)
aaaaCTACATTTTT‑TTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGAAAg < 2:1857775/76‑1 (MQ=255)
aaaaCTACATTTTT‑TTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGAAAg < 2:9265444/76‑1 (MQ=255)
cTACATTTTT‑TTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGAAAGCGcc < 1:4845353/76‑1 (MQ=255)
cTACATTTTT‑TTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGAAAGCGcc > 1:3781561/1‑76 (MQ=255)
cTACATTTTT‑TTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGAAAGCGcc > 1:3011209/1‑76 (MQ=255)
|
ATAGCATTATTCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑TTTT‑TTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGAAAGCGCC > REL606/3875550‑3875695
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
