Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A105 F1 I1 R1
|
16 |
277.3 |
18051348 |
92.9% |
16769702 |
75.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
REL606 |
3,875,632 |
(T)7→8 |
intergenic (‑66/+287) |
glmU ← / ← atpC |
bifunctional N‑acetylglucosamine‑1‑phosphate uridyltransferase/glucosamine‑1‑phosphate acetyltransferase/F0F1 ATP synthase subunit epsilon |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | REL606 | 3,875,625 | 1 | . | T | 98.1%
| 836.5
/ 5.8
| 206 | intergenic (‑59/+294) | glmU/atpC | bifunctional N‑acetylglucosamine‑1‑phosphate uridyltransferase/glucosamine‑1‑phosphate acetyltransferase/F0F1 ATP synthase subunit epsilon |
| Reads supporting (aligned to +/- strand): ref base . (2/2); new base T (102/100); total (104/102) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 232 total aligned reads displayed.
ATAGCATTATTCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑TTTTTT‑TCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGAAAGCGCCA > REL606/3875550‑3875696
|
tAGCATTATTCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑t > 2:6627540/1‑76 (MQ=255)
aGCATTATTCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑tt < 2:7581657/76‑1 (MQ=255)
aGCATTATTCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑tt < 2:1776008/76‑1 (MQ=255)
gCATTATTCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑ttt > 1:7172969/1‑76 (MQ=255)
cATTATTCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑tttt > 2:1333041/1‑76 (MQ=255)
cATTATTCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑tttt > 2:6226901/1‑76 (MQ=255)
attattCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑ttttt > 2:8822485/1‑76 (MQ=255)
attattCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑ttttt > 2:6835766/1‑76 (MQ=255)
attattCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑ttttt > 1:1922353/1‑76 (MQ=255)
attCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑tttttt‑tt < 1:657821/76‑2 (MQ=255)
attCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑tttttt‑tt > 1:4535210/1‑75 (MQ=255)
ttCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTCGAAAAAACTACA‑tttttt‑ttc < 2:2181097/76‑3 (MQ=255)
tCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑tttttt‑ttca > 2:4215416/1‑73 (MQ=255)
tCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑tttttt‑ttca < 1:5100656/76‑4 (MQ=255)
aCATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTTTT‑TCATCg < 1:2122016/76‑1 (MQ=255)
cATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTTTT‑TCATCGt > 1:5643885/1‑76 (MQ=255)
cATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTTTT‑TCATCGt > 2:7085075/1‑76 (MQ=255)
aTACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTTTT‑TCATCGTg > 2:3677505/1‑76 (MQ=255)
aTACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTTTT‑TCATCGTg > 2:7444316/1‑76 (MQ=255)
aTACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTTTT‑TCATCGTg > 1:4958015/1‑76 (MQ=255)
aTACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTTTT‑TCATCGTg < 1:3838125/76‑1 (MQ=255)
aCGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTTTT‑TCATCGTGaa > 1:7653587/1‑76 (MQ=255)
aCGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTTTT‑TCATCGTGaa < 1:5045852/76‑1 (MQ=255)
cgcgTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTTTT‑TCATCGTGaaa < 2:2093237/76‑1 (MQ=255)
gcgTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTTTT‑TCATCGTGAAAt < 1:973784/76‑1 (MQ=255)
cgTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTTTT‑TCATCGTGAAATg > 1:8584641/1‑76 (MQ=255)
gTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTTTT‑TCATCGTGAAATgg > 1:2212086/1‑76 (MQ=255)
gTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTTTT‑TCATCGTGAAATgg < 2:2847759/76‑1 (MQ=255)
tCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑TTTTTT‑TCATCGTGAAATGGAc > 2:4813935/1‑76 (MQ=255)
ccTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTTTT‑TCATCGTGAAATGGAc < 1:745786/76‑1 (MQ=255)
ccTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTTTT‑TCATCGTGAAATGGAc > 2:8942860/1‑76 (MQ=255)
cTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTTTT‑TCATCGTGAAATGGACa < 1:1345863/76‑1 (MQ=255)
cTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTTTT‑TCATCGTGAAATGGACa > 1:2198148/1‑76 (MQ=255)
cTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTTTT‑TCATCGTGAAATGGACa < 1:4791364/76‑1 (MQ=255)
tGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTTTT‑TCATCGTGAAATGGACag < 1:1854906/76‑1 (MQ=255)
gACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTTTT‑TCATCGTGAAATGGACaga > 1:822149/1‑76 (MQ=255)
aCTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTTTT‑TCATCGTGAAATGGACagag > 1:4007225/1‑76 (MQ=255)
aCTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTTTT‑TCATCGTGAAATGGACagag > 1:139531/1‑76 (MQ=255)
cTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTTTT‑TCATCGTGAAATGGACAGAgg < 2:2701315/76‑1 (MQ=255)
gTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTTTT‑TCATCGTGAAATGGACAGAGGAt < 1:2351713/76‑1 (MQ=255)
gTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTTTT‑TCATCGTGAAATGGACAGAGGAt < 1:5323912/76‑1 (MQ=255)
gTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTTTT‑TCATCGTGAAATGGACAGAGGAt < 2:595372/76‑1 (MQ=255)
tAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTTTT‑TCATCGTGAAATGGACAGAGGATa < 1:3645227/76‑1 (MQ=255)
tAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTTTT‑TCATCGTGAAATGGACAGAGGATa > 2:2303078/1‑76 (MQ=255)
tAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTTTT‑TCATCGTGAAATGGACAGAGGATa < 2:7929275/76‑1 (MQ=255)
aaTTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTTTT‑TCATCGTGAAATGGACAGAGGATaa < 1:5440333/76‑1 (MQ=255)
aTTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTTTT‑TCATCGTGAAATGGACAGAGGATaaa < 1:6791829/76‑1 (MQ=255)
aTTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTTTT‑TCATCGTGAAATGGACAGAGGATaaa < 2:5032666/76‑1 (MQ=255)
aTTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTTTT‑TCATCGTGAAATGGACAGAGGATaaa > 2:3876750/1‑76 (MQ=255)
tttGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTTTT‑TCATCGTGAAATGGACAGAGGATAAAt > 2:7521328/1‑76 (MQ=255)
tttGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTTTT‑TCATCGTGAAATGGACAGAGGATAAAt < 1:3308864/76‑1 (MQ=255)
ttGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTTTT‑TCATCGTGAAATGGACAGAGGATAAAtt > 1:274590/1‑76 (MQ=255)
ttGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTTTT‑TCATCGTGAAATGGACAGAGGATAAAtt < 2:1050550/76‑1 (MQ=255)
gaACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTTTT‑TCATCGTGAAATGGACAGAGGATAAATTGTTc > 1:4104959/1‑76 (MQ=255)
gaACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTTTT‑TCATCGTGAAATGGACAGAGGATAAATTGTTc < 1:8872871/76‑1 (MQ=255)
gaACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTTTT‑TCATCGTGAAATGGACAGAGGATAAATTGTTc < 1:6077781/76‑1 (MQ=255)
aaCGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTTTT‑TCATCGTGAAATGGACAGAGGATAAATTGTTCa < 1:1277409/76‑1 (MQ=255)
aaCGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTTTT‑TCATCGTGAAATGGACAGAGGATAAATTGTTCa < 1:6309199/76‑1 (MQ=255)
aCGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTTTT‑TCATCGTGAAATGGACAGAGGATAAATTGTTCaa < 1:7621988/76‑1 (MQ=255)
cGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTTTT‑TCATCGTGAAATGGACAGAGGATAAATTGTTCAAt > 1:1081307/1‑76 (MQ=255)
cGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTTTT‑TCATCGTGAAATGGACAGAGGATAAATTGTTCAAt < 1:6193807/76‑1 (MQ=255)
gAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTTTT‑TCATCGTGAAATGGACAGAGGATAAATTGTTCAATa < 2:3330557/76‑1 (MQ=255)
gAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTTTT‑TCATCGTGAAATGGACAGAGGATAAATTGTTCAATa < 1:8811646/76‑1 (MQ=255)
aaTTTAAACCGCTTCACCTTGAAAAAACTACATTTTTTT‑TCATCGTGAAATGGACAGAGGATAAATTGTTCAATaa < 1:6395011/76‑1 (MQ=255)
aaTTTAAACCGCTTCACCTTGAAAAAACTACATTTTTTT‑TCATCGTGAAATGGACAGAGGATAAATTGTTCAATaa < 2:8620280/76‑1 (MQ=255)
aaTTTAAACCGCTTCACCTTGAAAAAACTACATTTTTTT‑TCATCGTGAAATGGACAGAGGATAAATTGTTCAATaa > 2:8249796/1‑76 (MQ=255)
aaTTTAAACCGCTTCACCTTGAAAAAACTACATTTTTTT‑TCATCGTGAAATGGACAGAGGATAAATTGTTCAATaa < 2:8140712/76‑1 (MQ=255)
aaTTTAAACCGCTTCACCTTGAAAAAACTACATTTTTTT‑TCATCGTGAAATGGACAGAGGATAAATTGTTCAATaa > 1:6909007/1‑76 (MQ=255)
aaTTTAAACCGCTTCACCTTGAAAAAACTACATTTTTTT‑TCATCGTGAAATGGACAGAGGATAAATTGTTCAATaa < 2:2963253/76‑1 (MQ=255)
aTTTAAACCGCTTCACCTTGAAAAAACTACA‑TTTTTTATCATCGTGAAATGGACAGAGGATAAATTGTTCAATAAc > 1:4628901/1‑76 (MQ=255)
tttAAACCGCTTCACCTTGAAAAAACTACATTTTTTT‑TCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACg < 2:484683/76‑1 (MQ=255)
aaaCCGCTTCACCTTGAAAAAACTACATTTTTTT‑TCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGAt > 2:192808/1‑76 (MQ=255)
aaaCCGCTTCACCTTGAAAAAACTACATTTTTTT‑TCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGAt > 1:6594744/1‑76 (MQ=255)
aaaCCGCTTCACCTTGAAAAAACTACATTTTTTT‑TCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGAt > 1:8970341/1‑76 (MQ=255)
aaCCGCTTCACCTTGAAAAAACTACATTTTTTT‑TCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGAtt < 1:306535/76‑1 (MQ=255)
aCCGCTTCACCTTGAAAAAACTACATTTTTTT‑TCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTa < 2:437509/76‑1 (MQ=255)
aCCGCTTCACCTTGAAAAAACTACATTTTTTT‑TCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTa < 2:7126362/76‑1 (MQ=255)
ccGCTTCACCTTGAAAAAACTACATTTTTTT‑TCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTAt > 1:8685370/1‑76 (MQ=255)
gCTTCACCTTGAAAAAACTACATTTTTTT‑TCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATcc < 2:149133/76‑1 (MQ=255)
gCTTCACCTTGAAAAAACTACATTTTTTT‑TCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATcc > 1:43136/1‑76 (MQ=255)
cTTCACCTTGAAAAAACTACATTTTTTT‑TCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATccc > 2:1246210/1‑76 (MQ=255)
ttCACCTTGAAAAAACTACATTTTTTT‑TCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATcccc > 1:7036304/1‑76 (MQ=255)
ttCACCTTGAAAAAACTACATTTTTTT‑TCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATcccc > 1:1775997/1‑76 (MQ=255)
cACCTTGAAAAAACTACATTTTTTT‑TCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGc > 1:8316904/1‑76 (MQ=255)
cACCTTGAAAAAACTACATTTTTTT‑TCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGc > 1:774354/1‑76 (MQ=255)
ccTTGAAAAAACTACATTTTTTT‑TCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTg < 2:7979542/76‑1 (MQ=255)
ttGAAAAAACTACATTTTTTT‑TCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGAc < 1:400576/76‑1 (MQ=255)
ttGAAAAAACTACATTTTTTT‑TCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGAc > 2:5863394/1‑76 (MQ=255)
ttGAAAAAACTACATTTTTTT‑TCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGAc < 2:824537/76‑1 (MQ=255)
tGAAAAAACTACATTTTTTT‑TCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACg < 1:301111/76‑1 (MQ=255)
tGAAAAAACTACATTTTTTT‑TCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACg > 1:3155246/1‑76 (MQ=255)
tGAAAAAACTACATTTTTTT‑TCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACg > 2:3960130/1‑76 (MQ=255)
tGAAAAAACTACATTTTTTT‑TCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACg < 1:2260988/76‑1 (MQ=255)
tGAAAAAACTACATTTTTTT‑TCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACg > 2:6350145/1‑76 (MQ=255)
aaaaaCTACATTTTTTT‑TCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGaaa < 2:7717498/76‑1 (MQ=255)
aaaaCTACATTTTTTT‑TCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGAAAg > 2:2424269/1‑76 (MQ=255)
aaaaCTACATTTTTTT‑TCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGAAAg < 1:7326741/76‑1 (MQ=255)
aaaaCTACATTTTTTT‑TCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGAAAg < 2:5512987/76‑1 (MQ=255)
aaaCTACATTTTTTT‑TCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGAAAgc > 2:8014407/1‑76 (MQ=255)
aCTACATTTTTTT‑TCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGAAAgcgc > 1:8022196/1‑76 (MQ=255)
|
ATAGCATTATTCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑TTTTTT‑TCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGAAAGCGCCA > REL606/3875550‑3875696
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
