Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A119 F1 I1 R1
|
20 |
247.5 |
15984500 |
92.7% |
14817631 |
75.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
REL606 |
3,875,632 |
(T)7→8 |
intergenic (‑66/+287) |
glmU ← / ← atpC |
bifunctional N‑acetylglucosamine‑1‑phosphate uridyltransferase/glucosamine‑1‑phosphate acetyltransferase/F0F1 ATP synthase subunit epsilon |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | REL606 | 3,875,625 | 1 | . | T | 98.7%
| 608.2
/ 0.3
| 151 | intergenic (‑59/+294) | glmU/atpC | bifunctional N‑acetylglucosamine‑1‑phosphate uridyltransferase/glucosamine‑1‑phosphate acetyltransferase/F0F1 ATP synthase subunit epsilon |
| Reads supporting (aligned to +/- strand): ref base . (1/1); new base T (62/87); total (63/88) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.18e-01 |
Only 100 of 185 total aligned reads displayed.
ATAGCATTATTCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑TT‑TTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGAAAGCGC > REL606/3875550‑3875694
|
aTAGCATTATTCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACa > 2:1621344/1‑76 (MQ=255)
tAGCATTATTCAACATGCGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑t < 1:6795477/76‑1 (MQ=255)
tAGCATTATTCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑t < 2:3451701/76‑1 (MQ=255)
tAGCATTATTCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑t < 1:2426197/76‑1 (MQ=255)
aGCATTATTCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑tt < 2:2184384/76‑1 (MQ=255)
aGCATTATTCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑tt < 2:2703593/76‑1 (MQ=255)
aGCATTATTCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑tt > 2:2471786/1‑76 (MQ=255)
aGCATTATTCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑tt > 1:2460127/1‑76 (MQ=255)
attattCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑tt‑ttt > 2:4825441/1‑76 (MQ=255)
ttattCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑tt‑tttt > 2:6725364/1‑76 (MQ=255)
tattCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑tt‑ttttt > 1:930608/1‑76 (MQ=255)
attCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑tt‑tttttt > 1:2792598/1‑75 (MQ=255)
attCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑tt‑tttttt < 1:5212663/76‑2 (MQ=255)
tCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑tt‑ttttttca > 2:1327334/1‑73 (MQ=255)
aCATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTT‑TTTTTCATCg > 2:5510577/1‑76 (MQ=255)
aTACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTT‑TTTTTCATCGTg > 1:7138301/1‑76 (MQ=255)
aTACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTT‑TTTTTCATCGTg > 1:6629444/1‑76 (MQ=255)
aTACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTT‑TTTTTCATCGTg < 1:3317465/76‑1 (MQ=255)
aTACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTT‑TTTTTCATCGTg > 2:3933651/1‑76 (MQ=255)
gcgTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTT‑TTTTTCATCGTGAAAt < 2:6184022/76‑1 (MQ=255)
gTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑TT‑TTTTTCATCGTGAAATGGa < 2:262320/76‑1 (MQ=255)
tCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTT‑TTTTTCATCGTGAAATGGa < 1:394888/76‑1 (MQ=255)
ccTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTT‑TTTTTCATCGTGAAATGGAc > 2:1537205/1‑76 (MQ=255)
cTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTT‑TTTTTCATCGTGAAATGGACa > 1:1526883/1‑76 (MQ=255)
cTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTT‑TTTTTCATCGTGAAATGGACa > 2:4739650/1‑76 (MQ=255)
cTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTT‑TTTTTCATCGTGAAATGGACa > 1:4562254/1‑76 (MQ=255)
cTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTT‑TTTTTCATCGTGAAATGGACa < 1:5782173/76‑1 (MQ=255)
tGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTT‑TTTTTCATCGTGAAATGGACag < 2:7469712/76‑1 (MQ=255)
tGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTT‑TTTTTCATCGTGAAATGGACag > 2:4889756/1‑76 (MQ=255)
tGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTT‑TTTTTCATCGTGAAATGGACag > 2:5117944/1‑76 (MQ=255)
tGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTT‑TTTTTCATCGTGAAATGGACag < 2:7070801/76‑1 (MQ=255)
gACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTT‑TTTTTCGTCGTGAAATGGACaga > 1:5602137/1‑76 (MQ=255)
gACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTT‑TTTTTCATCGTGAAATGGACaga > 1:5815391/1‑76 (MQ=255)
aCTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTT‑TTTTTCATCGTGAAATGGACagag < 2:5653439/76‑1 (MQ=255)
aCTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTT‑TTTTTCATCGTGAAATGGACagag > 1:1379362/1‑76 (MQ=255)
tGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTT‑TTTTTCATCGTGAAATGGACAGAGGa > 1:5368342/1‑76 (MQ=255)
gTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTT‑TTTTTCATCGTGAAATGGACAGAGGAt < 2:6327628/76‑1 (MQ=255)
gTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTT‑TTTTTCATCGTGAAATGGACAGAGGAt < 2:1165062/76‑1 (MQ=255)
aaTTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTT‑TTTTTCATCGTGAAATGGACAGAGGATaa < 1:2890629/76‑1 (MQ=255)
aaTTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTT‑TTTTTCATCGTGAAATGGACAGAGGATaa < 1:2693452/76‑1 (MQ=255)
aaTTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTT‑TTTTTCATCGTGAAATGGACAGAGGATaa < 1:3096527/76‑1 (MQ=255)
ttGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTT‑TTTTTCATCGTGAAATgg < 1:1198568/62‑1 (MQ=255)
ttGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTT‑TTTTTCATCGTGAAATGGACAGAGGATAAAtt > 2:1523233/1‑76 (MQ=255)
ttGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTT‑TTTTTCATCGTGAAATGGACAGAGGATAAAtt < 2:1043059/76‑1 (MQ=255)
ttGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTT‑TTTTTCATCGTGAAATGGACAGAGGATAAAtt < 2:1086664/76‑1 (MQ=255)
tGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTT‑TTTTTCATCGTGAAATGGACAGAGGATAAATTg > 1:2924609/1‑76 (MQ=255)
tGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTT‑TTTTTCATCGTGAAATGGACAGAGGATAAATTg > 2:3606056/1‑76 (MQ=255)
gagaACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTT‑TTTTTCATCGTGAAATGGACAGAGGATAAATTGt > 2:888823/1‑76 (MQ=255)
gaACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTT‑TTTTTCATCGTGAAATGGACAGAGGATAAATTGTTc < 1:6057988/76‑1 (MQ=255)
gaACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTT‑TTTTTCATCGTGAAATGGACAGAGGATAAATTGTTc < 2:1639010/76‑1 (MQ=255)
gaACGAATTTAAACCGCATCACCTTGTAAAAACTACATTT‑TTTTTCATCGTGAAATGGACAGAGGATAAATTGTTc < 2:3974730/76‑1 (MQ=255)
cGAATTTAAACCGCTTCACCTTGAAAAAACTACATTT‑TTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAAt < 2:636663/76‑1 (MQ=255)
gAATTTAAACCGCTTCACCTTGAAAAAACTACATTT‑TTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATa > 1:1090651/1‑76 (MQ=255)
gAATTTAAACCGCTTCACCTTGAAAAAACTACATTT‑TTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATa > 2:5768871/1‑76 (MQ=255)
aaTTTAAACCGCTTCACCTTGAAAAAACTACATTT‑TTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATaa < 2:5965423/76‑1 (MQ=255)
aaTTTAAACCGCTTCACCTTGAAAAAACTACATTT‑TTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATaa > 2:4124027/1‑76 (MQ=255)
aaTTTAAACCGCTTCACCTTGAAAAAACTACATTT‑TTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATaa < 2:2941829/76‑1 (MQ=255)
aaTTTAAACCGCTTCACCTTGAAAAAACTACATTT‑TTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATaa < 2:6037412/76‑1 (MQ=255)
aTTTAAACCGCTTCACCTTGAAAAAACTACATTT‑TTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAAc > 2:360031/1‑76 (MQ=255)
tttAAACCGCTTCACCTTGAAAAAACTACATTT‑TTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACg < 2:2070197/76‑1 (MQ=255)
ttAAACCGCTTCACCTTGAAAAAACTACATTT‑TTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACgg < 2:6633763/76‑1 (MQ=255)
ttAAACCGCTTCACCTTGAAAAAACTACATTT‑TTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACgg < 1:3191312/76‑1 (MQ=255)
tAAACCGCTTCACCTTGAAAAAACTACATTT‑TTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCATTAACGGa > 2:2007888/1‑76 (MQ=255)
tAAACCGCTTCACCTTGAAAAAACTACATTT‑TTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGa > 1:4177046/1‑76 (MQ=255)
aaaCCGCTTCACCTTGAAAAAACTACATTT‑TTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGAt < 1:7074900/76‑1 (MQ=255)
aaCCGCTTCACCTTGAAAAAACTACATTT‑TTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGAtt < 2:2742616/76‑1 (MQ=255)
aaCCGCTTCACCTTGAAAAAACTACATTT‑TTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGAtt < 2:6233983/76‑1 (MQ=255)
aaCCGCTTCACCTTGAAAAAACTACATTT‑TTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGAtt < 2:7738584/76‑1 (MQ=255)
aaCCGCTTCACCTTGAAAAAACTACATTT‑TTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGAtt < 1:1545760/76‑1 (MQ=255)
aCCGCTTCACCTTGAAAAAACTACATTT‑TTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTa < 2:613674/76‑1 (MQ=255)
ccGCTTCACCTTGAAAAAACTACATTT‑TTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTAt < 2:1127044/76‑1 (MQ=255)
ccGCTTCACCTTGAAAAAACTACATTT‑TTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTAt < 1:1393501/76‑1 (MQ=255)
ccGCTTCACCTTGAAAAAACTACATTT‑TTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTAt < 2:4564750/76‑1 (MQ=255)
ccGCTTCACCTTGAAAAAACTACATTT‑TTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTAt < 1:4805231/76‑1 (MQ=255)
ccGCTTCACCTTGAAAAAACTACATTT‑TTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTAt < 2:4492212/76‑1 (MQ=255)
ccGCTTCACCTTGAAAAAACTACATTT‑TTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTAt < 2:2961158/76‑1 (MQ=255)
gCTTCACCTTGAAAAAACTACATTT‑TTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATcc < 1:978593/76‑1 (MQ=255)
gCTTCACCTTGAAAAAACTACATTT‑TTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATcc < 1:7213616/76‑1 (MQ=255)
cTTCACCTTGAAAAAACTACATTT‑TTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATccc > 1:502239/1‑76 (MQ=255)
aCCTTGAAAAAACTACATTT‑TTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCt < 2:5855148/76‑1 (MQ=255)
ccTTGAAAAAACTACATTT‑TTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTg > 2:3369247/1‑76 (MQ=255)
ccTTGAAAAAACTACATTT‑TTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTg < 1:6690623/76‑1 (MQ=255)
ccTTGAAAAAACTACATTT‑TTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTg < 1:4120204/76‑1 (MQ=255)
ccTTGAAAAAACTACATTT‑TTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTg < 2:6514736/76‑1 (MQ=255)
tGAAAAAACTACATTT‑TTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACg > 1:1985669/1‑76 (MQ=255)
tGAAAAAACTACATTT‑TTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACg > 1:1610641/1‑76 (MQ=255)
tGAAAAAACTACATTT‑TTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACg < 2:3908351/76‑1 (MQ=255)
gAAAAAACTACATTT‑TTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGa > 1:7332432/1‑76 (MQ=255)
aaaaaaCTACATTT‑TTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGaa > 2:7575369/1‑76 (MQ=255)
aaaaaaCTACA‑TTGTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGaa < 2:1247049/76‑1 (MQ=255)
aaaaaCTACATTT‑TTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGaaa < 2:7429842/76‑1 (MQ=255)
aaaaaCTACATTT‑TTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGaaa < 1:7725251/76‑1 (MQ=255)
aaaaaCTACATTT‑TTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGaaa < 2:7904282/76‑1 (MQ=255)
aagcTACATTT‑TTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGAAAgc > 1:7934518/4‑76 (MQ=255)
aaaCTACATTT‑TTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGAAAgc > 2:7680743/1‑76 (MQ=255)
aaCTACATTT‑TTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGAAAgcg > 1:2257314/1‑76 (MQ=255)
aaCTACATTT‑TTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGAAAgcg > 1:1433011/1‑76 (MQ=255)
aaCTACATTT‑TTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGAAAgcg > 1:4510187/1‑76 (MQ=255)
aCTACATTT‑TTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGAAAgcgc > 1:1140872/1‑76 (MQ=255)
aCTACATTT‑TTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGAAAgcgc < 1:6816789/76‑1 (MQ=255)
|
ATAGCATTATTCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑TT‑TTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGAAAGCGC > REL606/3875550‑3875694
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
