Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A127 F1 I1 R1
|
15 |
330.5 |
20417406 |
95.5% |
19498622 |
76.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
REL606 |
3,875,632 |
(T)7→8 |
intergenic (‑66/+287) |
glmU ← / ← atpC |
bifunctional N‑acetylglucosamine‑1‑phosphate uridyltransferase/glucosamine‑1‑phosphate acetyltransferase/F0F1 ATP synthase subunit epsilon |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | REL606 | 3,875,625 | 1 | . | T | 97.9%
| 968.2
/ 10.0
| 234 | intergenic (‑59/+294) | glmU/atpC | bifunctional N‑acetylglucosamine‑1‑phosphate uridyltransferase/glucosamine‑1‑phosphate acetyltransferase/F0F1 ATP synthase subunit epsilon |
| Reads supporting (aligned to +/- strand): ref base . (2/3); new base T (99/130); total (101/133) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.85e-01 |
Only 100 of 274 total aligned reads displayed.
TAGCATTATTCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑TTTTT‑TTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGAAAGCGCC > REL606/3875551‑3875695
|
tAGCATTATTCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑t < 2:5096609/76‑1 (MQ=255)
tAGCATTATTCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑t > 2:7082488/1‑76 (MQ=255)
aGCATTATTCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑tt < 1:6962764/76‑1 (MQ=255)
aGCATTATTCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑tt > 1:1713302/1‑76 (MQ=255)
cATTATTCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGACAAAACTACA‑tttt > 1:5184339/1‑76 (MQ=255)
cATTATTCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑tttt > 1:6590228/1‑76 (MQ=255)
cATTATTCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑tttt < 2:9343892/76‑1 (MQ=255)
cATTATTCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑tttt > 2:9581319/1‑76 (MQ=255)
attattCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑ttttt > 1:10114952/1‑76 (MQ=255)
ttattCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑ttttt‑t > 2:3098123/1‑76 (MQ=255)
ttattCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑ttttt‑t > 2:2837080/1‑76 (MQ=255)
tattCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑ttttt‑tt > 2:344119/1‑76 (MQ=255)
tattCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑ttttt‑tt > 1:2178812/1‑76 (MQ=255)
tCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑ttttt‑tttca < 1:1611085/76‑4 (MQ=255)
aTACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTTT‑TTCATCGTg < 2:536669/76‑1 (MQ=255)
aTACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTTT‑TTCATCGTg > 2:2477207/1‑76 (MQ=255)
tACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTTT‑TTCATCGTGa > 2:9957239/1‑76 (MQ=255)
tACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTTT‑TTCATCGTGa < 2:8718079/76‑1 (MQ=255)
tACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTTT‑TTCATCGTGa > 2:9869238/1‑76 (MQ=255)
tACGCGTCCTGACGGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTTT‑TTCATCGTGa < 1:1225040/76‑1 (MQ=255)
aCGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTTT‑TTCATCGTGaa < 1:1352151/76‑1 (MQ=255)
cgcgTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTTT‑TTCATCGTGaaa < 2:6070937/76‑1 (MQ=255)
cgcgTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTTT‑TTCATCGTGaaa < 2:3865542/76‑1 (MQ=255)
cgTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTTT‑TTCATCGTGAAATg > 1:3796876/1‑76 (MQ=255)
cgTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTTT‑TTCATCGTGAAATg > 1:7459753/1‑76 (MQ=255)
gTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTTT‑TTCATCGTGAAATgg < 2:8660511/76‑1 (MQ=255)
gTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTTT‑TTCATCGTGAAATgg > 1:5938696/1‑76 (MQ=255)
tCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTTT‑TTCATCGTGAAATGGa > 2:9507711/1‑76 (MQ=255)
ccTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTTT‑TTCATCGTGAAATGGAc > 2:1097060/1‑76 (MQ=255)
ccTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTTT‑TTCATCGTGAAATGGAc > 2:6927207/1‑76 (MQ=255)
ccTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTTT‑TTCATCGTGAAATGGAc < 1:4964215/76‑1 (MQ=255)
ccTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTTT‑TTCATCGTGAAATGGAc > 1:7777983/1‑76 (MQ=255)
cTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAATTACATTTTTT‑TTCATCGTGACATGGACa > 1:5078407/1‑76 (MQ=255)
cTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTTT‑TTCATCGTGAAATGGACa > 1:989233/1‑76 (MQ=255)
cTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTTT‑TTCATCGTGAAATGGACa < 2:6173064/76‑1 (MQ=255)
tGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTTT‑TTCATCGTGAAATGGACag < 1:4254339/76‑1 (MQ=255)
gACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTTT‑TTCATCGTGAAATGGACaga > 1:5759766/1‑76 (MQ=255)
aCTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTTT‑TTCATCGTGAAATGGACagag < 2:511164/76‑1 (MQ=255)
cTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTTT‑TTCATCGTGAAATGGACAGAgg > 2:2695303/1‑76 (MQ=255)
tGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTTT‑TTCATCGTGAAATGGACAGAGGa < 2:3961355/76‑1 (MQ=255)
tGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTTT‑TTCATCGTGAAATGGACAGAGGa > 1:1093546/1‑76 (MQ=255)
tGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTTT‑TTCATCGTGAAATGGACAGAGGa < 1:2701765/76‑1 (MQ=255)
tGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTTT‑TTCATCGTGAAATGGACAGAGGa < 1:9075000/76‑1 (MQ=255)
tGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTTT‑TTCATCGTGAAATGGACAGAGGa > 1:7953399/1‑76 (MQ=255)
tGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTTT‑TTCATCGTGAAATGGACAGAGGa > 2:5657034/1‑76 (MQ=255)
gTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTTT‑TTCATCGTGAAATGGACAGAGGAt < 1:7399488/76‑1 (MQ=255)
gTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTTT‑TTCATCGTGAAATGGACAGAGGAt < 1:541285/76‑1 (MQ=255)
tAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTTT‑TTCATCGTGAAATGGACAGAGGATa < 2:8601974/76‑1 (MQ=255)
aaTTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTTT‑TTCATCGTGAAATGGACAGAGGATaa > 2:8413204/1‑76 (MQ=255)
aaTTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTTT‑TTCATCGTGAAATGGACAGAGGATaa < 2:3375082/76‑1 (MQ=255)
aaTTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTTT‑TTCATCGTGAAATGGACAGAGGATaa < 2:2362417/76‑1 (MQ=255)
aaTTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTTT‑TTCATCGTGAAATGGACAGAGGATaa < 1:10199694/76‑1 (MQ=255)
aaTTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTTT‑TTCATCGTGAAATGGACAGAGGATaa > 1:8636892/1‑76 (MQ=255)
aaTTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTTT‑TTCATCGTGAAATGGACAGAGGATaa > 1:637527/1‑76 (MQ=255)
aTTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTTT‑TTCATCGTGAAATGGACAGAGGATaaa > 1:9277207/1‑76 (MQ=255)
aTTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTTT‑TTCATCGTGAAATGGACAGAGGATaaa < 1:5509061/76‑1 (MQ=255)
aTTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTTT‑TTCATCGTGAAATGGACAGAGGATaaa > 1:1835962/1‑76 (MQ=255)
aTTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑TTTTT‑TTCATCGTGAAATGGACAGAGGATAAAt > 2:4529167/1‑76 (MQ=255)
tttGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTTT‑TTCATCGTGAAATGGACAGAGGATAAAt < 1:9496545/76‑1 (MQ=255)
ttGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTTT‑TTCATCGTGAAATGGACAGAGGATAAAtt > 2:8901696/1‑76 (MQ=255)
ttGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTTT‑TTCATCGTGAAATGGACAGAGGATAAAtt > 1:6699736/1‑76 (MQ=255)
gagaACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTTT‑TTCATCGTGAAATGGACAGAGGATAAATTGt > 1:3773997/1‑76 (MQ=255)
agaACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTTT‑TTCATCGTGAAATGGACAGAGGATAAATTGtt < 1:4516051/76‑1 (MQ=255)
aCGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTTT‑TTCATCGTGAAATGGACAGAGGATAAATTGTTCaa > 2:9012670/1‑76 (MQ=255)
aCGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTTT‑TTCATCGTGAAATGGACAGAGGATAAATTGTTCaa < 2:8108943/76‑1 (MQ=255)
aCGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTTT‑TTCATCGTGAAATGGACAGAGGATAAATTGTTCaa < 1:5794467/76‑1 (MQ=255)
gAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTTT‑TTCATCGTGAAATGGACAGAGGATAAATTGTTCAATa < 2:4431056/76‑1 (MQ=255)
gAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTTT‑TTCATCGTGAAATGGACAGAGGATAAATTGTTCAATa > 1:7590959/1‑76 (MQ=255)
gAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTTT‑TTCATCGTGAAATGGACAGAGGATAAATTGTTCAATa < 1:4380497/76‑1 (MQ=255)
aaTTTAAACCGCTTCACCTTGAAAAAACTACATTTTTT‑TTCATCGTGAAATGGACAGAGGATAAATTGTTCAATaa < 2:4289370/76‑1 (MQ=255)
aaTTTAAACCGCTTCACCTTGAAAAAACTACATTTTTT‑TTCATCGTGAAATGGACAGAGGATAAATTGTTCAATaa > 1:7703893/1‑76 (MQ=255)
tttAAACCGCTTCACCTTGAAAAAACTACATTTTTT‑TTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACg < 1:9855777/76‑1 (MQ=255)
tttAAACCGCTTCACCTTGAAAAAACTACATTTTTT‑TTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACg < 2:2954491/76‑1 (MQ=255)
ttAAACCGCTTCACCTTGAAAAAACTACATTTTTT‑TTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACgg > 1:6190090/1‑76 (MQ=255)
ttAAACCGCTTCACCTTGAAAAAACTACATTTTTT‑TTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACgg < 1:4832062/76‑1 (MQ=255)
tAAACCGCTTCACCTTGAAAAAACTACATTTTTT‑TTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGa < 1:2960008/76‑1 (MQ=255)
aCCGCTTCACCTTGAAAAAACTACATTTTTT‑TTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTa < 1:4910185/76‑1 (MQ=255)
aCCGCTTCACCTTGAAAAAACTACATTTTTT‑TTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTa > 2:1874222/1‑76 (MQ=255)
aCCGCTTCACCTTGAAAAAACTACATTTTTT‑TTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTa < 2:9112260/76‑1 (MQ=255)
ccGCTTCACCTTGAAAAAACTACATTTTTT‑TTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTAt < 2:4750569/76‑1 (MQ=255)
cTTCACCTTGAAAAAACTACATTTTTT‑TTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATccc > 1:7242104/1‑76 (MQ=255)
ttCACCTTGAAAAAACTACATTTTTT‑TTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATcccc < 2:7731114/76‑1 (MQ=255)
tCACCTTGAAAAAACTACATTTTTT‑TTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCg < 2:5454209/76‑1 (MQ=255)
cACCTTGAAAAAACTACATTTTTT‑TTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGc > 2:7664974/1‑76 (MQ=255)
cTTGAAAAAACTACATTTTTT‑TTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGa < 2:2556933/76‑1 (MQ=255)
cTTGAAAAAACTACATTTTTT‑TTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGa < 2:7328501/76‑1 (MQ=255)
cTTGAAAAAACTACATTTTTT‑TTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGa > 1:9602032/1‑76 (MQ=255)
cTTGAAAAAACTACATTTTTT‑TTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGa < 2:4638339/76‑1 (MQ=255)
cTTGAAAAAACTACA‑TTTTTGTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGa < 2:9266434/76‑1 (MQ=255)
gAAAAAACTACATTTTTT‑TTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGa < 1:7082488/76‑1 (MQ=255)
gAAAAAACTACATTTTTT‑TTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGa > 2:2098723/1‑76 (MQ=255)
aaaaaaCTACATTTTTT‑TTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGaa < 1:2368575/76‑1 (MQ=255)
aaaaCTACATTTTTT‑TTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGAAAg < 1:1175946/76‑1 (MQ=255)
aaaaCTACATTTTTT‑TTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGAAAg < 2:6615745/76‑1 (MQ=255)
aaaaCTACATTTTTT‑TTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGAAAg < 2:562522/76‑1 (MQ=255)
aaaCTACATTTTTT‑TTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGAAAgc < 1:3931315/76‑1 (MQ=255)
aaaCTACATTTTTT‑TTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGAAAgc > 1:2562260/1‑76 (MQ=255)
aaaCTACATTTTTT‑TTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGAAAgc < 2:3529909/76‑1 (MQ=255)
cTACATTTTTT‑TTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGAAAGCGcc > 1:2742444/1‑76 (MQ=255)
cTACATTTTTT‑TTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGAAAGCGcc > 1:6084871/1‑76 (MQ=255)
|
TAGCATTATTCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑TTTTT‑TTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGAAAGCGCC > REL606/3875551‑3875695
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
