Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A132 F1 I1 R1	21	265.3	16744490	95.4%	15974243	76.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	REL606	3,875,632	(T)_7→8	intergenic (‑66/+287)	glmU ← / ← atpC	bifunctional N‑acetylglucosamine‑1‑phosphate uridyltransferase/glucosamine‑1‑phosphate acetyltransferase/F0F1 ATP synthase subunit epsilon

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	REL606	3,875,625	1	.	T	98.9%	771.7 / ‑0.6	178	intergenic (‑59/+294)	glmU/atpC	bifunctional N‑acetylglucosamine‑1‑phosphate uridyltransferase/glucosamine‑1‑phosphate acetyltransferase/F0F1 ATP synthase subunit epsilon
Reads supporting (aligned to +/- strand): ref base . (0/2); new base T (67/109); total (67/111)
Fisher's exact test for biased strand distribution p-value = 5.28e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 214 total aligned reads displayed.

ATAGCATTATTCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑‑TTT‑TTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGAAAGCGCC  >  REL606/3875550‑3875695

aTAGCATTATTCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACa                                                                           <  2:6111848/76‑1 (MQ=255)

aTAGCATTATTCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACa                                                                           >  2:1955435/1‑76 (MQ=255)

aTAGCATTATTCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACa                                                                           >  1:2439148/1‑76 (MQ=255)

aTAGCATTATTCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACa                                                                           <  2:2013199/76‑1 (MQ=255)

 tAGCATTATTCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑‑t                                                                        >  2:795357/1‑76 (MQ=255)

   gCATTATTCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑‑ttt                                                                      <  2:2823329/76‑1 (MQ=255)

   gCATTATTCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑‑ttt                                                                      <  2:3536372/76‑1 (MQ=255)

   gCATTATTCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑‑ttt                                                                      <  2:5332518/76‑1 (MQ=255)

   gCATTATTCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑‑ttt                                                                      >  2:7613576/1‑76 (MQ=255)

    cATTATTCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑‑ttt‑t                                                                    >  1:4247762/1‑76 (MQ=255)

     attattCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑‑ttt‑tt                                                                   <  1:6645200/76‑1 (MQ=255)

      ttattCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑‑ttt‑ttt                                                                  <  2:7728111/76‑1 (MQ=255)

      ttattCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑‑ttt‑ttt                                                                  >  2:1102542/1‑76 (MQ=255)

       tattCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑‑ttt‑tttt                                                                 >  2:114425/1‑76 (MQ=255)

        attCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑‑ttt‑ttttt                                                                >  1:1395602/1‑75 (MQ=255)

        attCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑‑ttt‑ttttt                                                                >  1:7382444/1‑75 (MQ=255)

         ttCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑‑ttt‑tttttc                                                               <  2:2858458/76‑3 (MQ=255)

         ttCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑‑ttt‑tttttc                                                               >  1:2221805/1‑74 (MQ=255)

         ttCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑‑ttt‑tttttc                                                               >  1:8221211/1‑74 (MQ=255)

          tCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑‑ttt‑tttttca                                                              >  1:5489191/1‑73 (MQ=255)

          tCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑‑ttt‑tttttca                                                              >  1:2818079/1‑73 (MQ=255)

          tCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑‑ttt‑tttttca                                                              <  1:198076/76‑4 (MQ=255)

             aCATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACAT‑TTT‑TTTTCATCg                                                            >  1:6234215/1‑76 (MQ=255)

              cATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACAT‑TTT‑TTTTCATCGt                                                           >  2:5439985/1‑76 (MQ=255)

              cATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACAT‑TTT‑TTTTCATCGt                                                           >  2:7465918/1‑76 (MQ=255)

               aTACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACAT‑TTT‑TTTTCATCGTg                                                          >  1:3055112/1‑76 (MQ=255)

               aTACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACAT‑TTT‑TTTTCATCGTg                                                          >  2:6275028/1‑76 (MQ=255)

                tACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACAT‑TTT‑TTTTCATCGTGa                                                         >  2:638814/1‑76 (MQ=255)

                tACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACAT‑TTT‑TTTTCATCGTGa                                                         <  2:351171/76‑1 (MQ=255)

                 aCGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACAT‑TTT‑TTTTCATCGTGaa                                                        >  2:7421058/1‑76 (MQ=255)

                 aCGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACAT‑TTT‑TTTTCATAGTGaa                                                        >  2:4114006/1‑76 (MQ=255)

                  cgcgTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACAT‑TTT‑TTTTCATCGTGaaa                                                       <  1:5175446/76‑1 (MQ=255)

                  cgcgTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACAT‑TTT‑TTTTCATCGTGaaa                                                       <  1:987955/76‑1 (MQ=255)

                   gcgTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACAT‑TTT‑TTTTCATCGTGAAAt                                                      <  1:5430744/76‑1 (MQ=255)

                    cgTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACAT‑TTT‑TTTTCATCGTGAAATg                                                     <  2:7855050/76‑1 (MQ=255)

                    cgTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACAT‑TTT‑TTTTCATCGTGAAATg                                                     <  2:776211/76‑1 (MQ=255)

                     gTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACAT‑TTT‑TTTTCATCGTGAAATgg                                                    <  2:7913282/76‑1 (MQ=255)

                       ccTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACAT‑TTT‑TTTTCATCGTGAAATGGAc                                                  >  2:511083/1‑76 (MQ=255)

                       ccTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACAT‑TTT‑TTTTCATCGTGAAATGGAc                                                  >  1:6252642/1‑76 (MQ=255)

                        cTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACAT‑TTT‑TTTTCATCGTGAAATGGACa                                                 <  1:3324001/76‑1 (MQ=255)

                         tGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACAT‑TTT‑TTTTCATCGTGAAATGGACag                                                <  1:4132811/76‑1 (MQ=255)

                         tGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACAT‑TTT‑TTTTCATCGTGAAATGGACag                                                <  2:1257365/76‑1 (MQ=255)

                         tGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACAT‑TTT‑TTTTCATCGTGAAATGGACag                                                <  1:899581/76‑1 (MQ=255)

                          gACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACAT‑TTT‑TTTTCATCGTGAAATGGACaga                                               >  1:1498220/1‑76 (MQ=255)

                          gACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACAT‑TTT‑TTTTCATCGTGAAATGGACaga                                               >  1:3716376/1‑76 (MQ=255)

                           aCTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACAT‑TTT‑TTTTCATCGTGAAATGGACagag                                              <  1:4373606/76‑1 (MQ=255)

                           aCTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACAT‑TTT‑TTTTCATCGTGAAATGGACagag                                              >  1:7965105/1‑76 (MQ=255)

                            cTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACAT‑TTT‑TTTTCATCGTGAAATGGACAGAgg                                             <  1:4978427/76‑1 (MQ=255)

                             tGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACAT‑TTT‑TTTTCATCGTGAAATGGACAGAGGa                                            >  2:2134027/1‑76 (MQ=255)

                             tGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACAT‑TTT‑TTTTCATCGTGAAATGGACAGAGGa                                            <  2:4837568/76‑1 (MQ=255)

                              gTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACAT‑TTT‑TTTTCATCGTGAAATGGACAGAGGAt                                           >  1:3739270/1‑76 (MQ=255)

                              gTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACAT‑TTT‑TTTTCATCGTGAAATGGACAGAGGAt                                           <  2:518144/76‑1 (MQ=255)

                              gTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACAT‑TTT‑TTTTCATCGTGAAATGGACAGAGGAt                                           <  1:2021757/76‑1 (MQ=255)

                              gTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACAT‑TTT‑TTTTCATCGTGAAATGGACAGAGGAt                                           <  1:5718368/76‑1 (MQ=255)

                              gTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACAT‑TTT‑TTTTCATCGTGAAATGGACAGAGGAt                                           >  1:3841258/1‑76 (MQ=255)

                              gTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACAT‑TTT‑TTTTCATCGTGAAATGGACAGAGGAt                                           >  1:6109681/1‑76 (MQ=255)

                               tAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACAT‑TTT‑TTTTCATCGTGAAATGGACAGAGGATa                                          <  1:393233/76‑1 (MQ=255)

                               tAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACAT‑TTT‑TTTTCATCGTGAAATGGACAGAGGATa                                          <  2:3008408/76‑1 (MQ=255)

                                aaTTTGAGAACGAATTTGAACCGCTTCACCTTGAAAAAACTACATTTTT‑TTTTCATCGTGAAATGGACAGAGGATa                                          <  2:1507104/76‑1 (MQ=255)

                                aaTTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACAT‑TTT‑TTTTCATCGTGAAATGGACAGAGGATaa                                         <  2:710539/76‑1 (MQ=255)

                                 aTTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACAT‑TTT‑TTTTCATCGTGAAATGGACAGAGGATaaa                                        <  1:2100300/76‑1 (MQ=255)

                                 aTTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACAT‑TTT‑TTTTCATCGTGAAATGGACAGAGGATaaa                                        <  1:2580499/76‑1 (MQ=255)

                                  tttGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACAT‑TTT‑TTTTCATCGTGAAATGGACAGAGGATAAAt                                       <  2:5141202/76‑1 (MQ=255)

                                   ttGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACAT‑TTT‑TTTTCATCGTGAAATGGACAGAGGATAAAtt                                      >  2:3947127/1‑76 (MQ=255)

                                     gagaACGAATTTAAACCGCTTCACCTTGAAAAAACTACAT‑TTT‑TTTTCATCGTGAAATGGACAGAGGATAAATTGt                                    <  1:3405629/76‑1 (MQ=255)

                                        aaCGAATTTAAACCGCTTCACCTTGAAAAAACTACAT‑TTT‑TTTTCATCGTGAAATGGACAGAGGATAAATTGTTCa                                 <  1:4888760/76‑1 (MQ=255)

                                        aaCGAATTTAAACCGCTTCACCTTGAAAAAACTACAT‑TTT‑TTTTCATCGTGAAATGGACAGAGGATAAATTGTTCa                                 <  1:4730795/76‑1 (MQ=255)

                                          cGAATTTAAACCGCTTCACCTTGAAAAAACTACAT‑TTT‑TTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAAt                               <  2:5747178/76‑1 (MQ=255)

                                          cGAATTTAAACCGCTTCACCTTGAAAAAACTACAT‑TTT‑TTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAAt                               >  2:7290786/1‑76 (MQ=255)

                                           gAATTTAAACCGCTTCACCTTGAAAAAACTACAT‑TTT‑TTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATa                              <  1:3996756/76‑1 (MQ=255)

                                            aaTTTAAACCGCTTCACCTTGAAAAAACTACAT‑TTT‑TTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATaa                             <  1:7099039/76‑1 (MQ=255)

                                             aTTTAAACCGCTTCACCTTGAAAAAACTACAT‑TTT‑TTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAAc                            <  1:6406979/76‑1 (MQ=255)

                                              tttAAACCGCTTCACCTTGAAAAAACTACAT‑TTT‑TTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACg                           <  1:1069944/76‑1 (MQ=255)

                                              tttAAACCGCTTCACCTTGAAAAAACTACAT‑TTT‑TTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACg                           <  1:1566237/76‑1 (MQ=255)

                                              tttAAACCGCTTCACCTTGAAAAAACTACAT‑TTT‑TTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACg                           <  2:1914483/76‑1 (MQ=255)

                                                 aaaCCGCTTCACCTTGAAAAAACTACAT‑TTT‑TTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGAt                        >  1:6142465/1‑76 (MQ=255)

                                                  aaCCGCTTCACCTTGAAAAAACTACAT‑TTT‑TTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGAtt                       <  1:4015507/76‑1 (MQ=255)

                                                      gCTTCACCTTGAAAAAACTACAT‑TTT‑TTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATcc                   <  2:6926648/76‑1 (MQ=255)

                                                       cTTCACCTTGAAAAAACTACAT‑TTT‑TTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATccc                  >  2:3263804/1‑76 (MQ=255)

                                                        ttCACCTTGAAAAAACTACAT‑TTT‑TTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATcccc                 >  1:3365101/1‑76 (MQ=255)

                                                        ttCACCTTGAAAAAACTACAT‑TTT‑TTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATcccc                 >  2:3210246/1‑76 (MQ=255)

                                                         tCACCTTGAAAAAACTACAT‑TTT‑TTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCg                >  1:4845107/1‑76 (MQ=255)

                                                          cACCTTGAAAAAACTACAT‑TTT‑TTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGc               >  1:7911208/1‑76 (MQ=255)

                                                           aCCTTGAAAAAACTACAT‑TTT‑TTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCt              <  1:3498535/76‑1 (MQ=255)

                                                           aCCTTGAAAAAACTACAT‑TTT‑TTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCt              <  1:5320450/76‑1 (MQ=255)

                                                           aCCTTGAAAAAACTACA‑‑TTTATTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCt              <  2:8296913/76‑1 (MQ=255)

                                                            ccTTGAAAAAACTACAT‑TTT‑TTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTg             <  2:1059107/76‑1 (MQ=255)

                                                             cTTGAAAAAACTACAT‑TTT‑TTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGa            <  2:381410/76‑1 (MQ=255)

                                                              ttGAAAAAACTACAT‑TTT‑TTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGAc           >  1:8176246/1‑76 (MQ=255)

                                                              ttGAAAAAACTACAT‑TTT‑TTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGAc           <  2:5383907/76‑1 (MQ=255)

                                                               tGAAAAAACTACAT‑TTT‑TTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACg          >  2:5812434/1‑76 (MQ=255)

                                                               tGAAAAAACTACAT‑TTT‑TTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACg          <  2:2194481/76‑1 (MQ=255)

                                                                 aaaaaaCTACAT‑TTT‑TTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGaa        <  2:6750076/76‑1 (MQ=255)

                                                                  aaaaaCTACAT‑TTT‑TTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGaaa       >  1:1014782/1‑76 (MQ=255)

                                                                  aaaaaCTACAT‑TTT‑TTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGaaa       >  2:132017/1‑76 (MQ=255)

                                                                  aaaaaCTACAT‑TTT‑TTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGaaa       <  1:1868612/76‑1 (MQ=255)

                                                                    aaaCTACAT‑TTT‑TTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGAAAgc     >  1:7027402/1‑76 (MQ=255)

                                                                    aaaCTACAT‑TTT‑TTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGAAAgc     >  2:4410263/1‑76 (MQ=255)

                                                                     aaCTACAT‑TTT‑TTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGAAAgcg    <  1:2668323/76‑1 (MQ=255)

                                                                     aaCTACAT‑TTT‑TTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGAAAgcg    <  2:4264487/76‑1 (MQ=255)

ATAGCATTATTCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑‑TTT‑TTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGAAAGCGCC  >  REL606/3875550‑3875695

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 39 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A