Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A20 F1 I1 R1
|
17 |
44.7 |
2849266 |
96.8% |
2758089 |
76.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
REL606 |
3,875,632 |
(T)7→8 |
intergenic (‑66/+287) |
glmU ← / ← atpC |
bifunctional N‑acetylglucosamine‑1‑phosphate uridyltransferase/glucosamine‑1‑phosphate acetyltransferase/F0F1 ATP synthase subunit epsilon |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | REL606 | 3,875,625 | 1 | . | T | 100.0%
| 152.9
/ NA
| 39 | intergenic (‑59/+294) | glmU/atpC | bifunctional N‑acetylglucosamine‑1‑phosphate uridyltransferase/glucosamine‑1‑phosphate acetyltransferase/F0F1 ATP synthase subunit epsilon |
| Reads supporting (aligned to +/- strand): ref base . (0/0); new base T (20/19); total (20/19) |
TAGCATTATTCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑‑TTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGAAAGCGCC > REL606/3875551‑3875695
|
tAGCATTATTCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑‑t < 2:1123347/76‑1 (MQ=255)
aGCATTATTCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑‑tt < 2:866304/76‑1 (MQ=255)
gCATTATTCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑‑ttt > 1:955298/1‑76 (MQ=255)
attattCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑‑ttttt < 1:1024405/76‑1 (MQ=255)
attattCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑‑ttttt < 2:752360/76‑1 (MQ=255)
ttattCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑‑tttttt > 2:77226/1‑76 (MQ=255)
tattCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑‑ttttttt < 2:1228832/76‑1 (MQ=255)
tCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑‑ttttttttca > 2:817420/1‑73 (MQ=255)
cATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACAT‑TTTTTTTCATCGt < 1:849071/76‑1 (MQ=255)
aTACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACAT‑TTTTTTTCATCGTg > 1:1153747/1‑76 (MQ=255)
aTACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACAT‑TTTTTTTCATCGTg > 2:929877/1‑76 (MQ=255)
aTACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACAT‑TTTTTTTCATCGTg > 2:929869/1‑76 (MQ=255)
tACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACAT‑TTTTTTTCATCGTGa > 1:1120958/1‑76 (MQ=255)
cgcgTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACAT‑TTTTTTTCATCGTGaaa > 2:327436/1‑76 (MQ=255)
gTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACAT‑TTTTTTTCATCGTGAAATgg < 2:357176/76‑1 (MQ=255)
tCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACAT‑TTTTTTTCATCGTGAAATGGa > 2:1250277/1‑76 (MQ=255)
cTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACAT‑TTTTTTTCATCGTGAAATGGACa < 1:804198/76‑1 (MQ=255)
cTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACAT‑TTTTTTTCATCGTGAAATGGACa < 1:702035/76‑1 (MQ=255)
cTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACAT‑TTTTTTTCATCGTGAAATGGACa > 1:1006292/1‑76 (MQ=255)
tGACTGTAATTTGAGAACTAATTTAAACCTCTTCTCCTTAAAAAAACTACAT‑TTTTTTTCATCGTAAAATGGACat < 2:391685/76‑2 (MQ=255)
gACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACAT‑TTTTTTTCATCGTGAAATGGACaga > 2:868032/1‑76 (MQ=255)
gACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACAT‑TTTTTTTCATCGTGAAATGGACaga > 2:868019/1‑76 (MQ=255)
gTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACAT‑TTTTTTTCATCGTGAAATGGACAGAGGAt < 1:724261/76‑1 (MQ=255)
tAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACAT‑TTTTTTTCATCGTGAAATGGACAGAGGATa < 2:702448/76‑1 (MQ=255)
aaTTTGAGAACGAATTTAACCCGCTTCACCTTGAAAAAACTACAT‑TTTTTTTCATCGTGAAATGGACAGAGGATaa > 2:1022524/1‑76 (MQ=255)
aaTTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACAT‑TTTTTTTCATCGTGAAATGGACAGAGGATaa > 1:336791/1‑76 (MQ=255)
gagaACGAATTTAAACCGCTTCACCTTGAAAAAACTACAT‑TTTTTTTCATCGTGAAATGGACAGAGGATAAATTGt > 1:957149/1‑76 (MQ=255)
agaACGAATTTAAACCGCTTCACCTTGAAAAAACTACAT‑TTTTTTTCATCGTGAAATGGACAGAGGATAAATTGtt < 2:379527/76‑1 (MQ=255)
aCGAATTTAAACCGCTTCACCTTGAAAAAACTACAT‑TTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCaa < 1:492760/76‑1 (MQ=255)
aCGAATTTAAACCGCTTCACCTTGAAAAAACTACAT‑TTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCaa < 1:492759/76‑1 (MQ=255)
gAATTTAAACCGCTTCACCTTGAAAAAACTACAT‑TTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATa < 2:272612/76‑1 (MQ=255)
aaaCCGCTTCACCTTGAAAAAACTACAT‑TTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGAt > 2:129323/1‑76 (MQ=255)
aaCCGCTTCACCTTGAAAAAACTACAT‑TTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGAtt < 1:1097832/76‑1 (MQ=255)
gCTTCACCTTGAAAAAACTACAT‑TTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATcc > 1:1162808/1‑76 (MQ=255)
cTTCACCTTGAAAAAACTACAT‑TTTTTTTCATNGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTANccc > 2:1325293/1‑76 (MQ=255)
ttCACCTTGAAAAAACTACAT‑TTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATcccc > 2:97169/1‑76 (MQ=255)
tCACCTTGAAAAAACTACAT‑TTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCg < 1:546903/76‑1 (MQ=255)
cACCTTGAAAAAACTACATTTTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCg < 2:790827/76‑1 (MQ=255)
aCCTTGAAAAAACTACAT‑TTTTTTTCATCGTGANATGGACAGAGGATAAATTGTTCNATAACGGATTNTCCCCGCt > 2:1195036/1‑76 (MQ=255)
cTTGAAAAAACTACAT‑TTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGa < 1:1181896/76‑1 (MQ=255)
tGAAAAAACTACAT‑TTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACg < 1:921349/76‑1 (MQ=255)
tGAAAAAACTACAT‑TTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACg < 1:899130/76‑1 (MQ=255)
aaaaaCTACAT‑TTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGaaa < 1:960981/76‑1 (MQ=255)
aaaaCTACAT‑TTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGAAAg > 1:604023/1‑76 (MQ=255)
aaaCTACAT‑TTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGAAAgc > 2:987057/1‑76 (MQ=255)
aaCTACAT‑TTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGAAAgcg < 1:702463/76‑1 (MQ=255)
aCTACAT‑TTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGAAAgcgc > 1:395661/1‑76 (MQ=255)
cTACAT‑TTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGAAAGCGcc < 2:1126439/76‑1 (MQ=255)
|
TAGCATTATTCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑‑TTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGAAAGCGCC > REL606/3875551‑3875695
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
