Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A91 F1 I1 R1
|
18 |
55.4 |
3661525 |
95.1% |
3482110 |
76.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
REL606 |
3,875,632 |
(T)7→8 |
intergenic (‑66/+287) |
glmU ← / ← atpC |
bifunctional N‑acetylglucosamine‑1‑phosphate uridyltransferase/glucosamine‑1‑phosphate acetyltransferase/F0F1 ATP synthase subunit epsilon |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | REL606 | 3,875,625 | 1 | . | T | 100.0%
| 195.4
/ NA
| 50 | intergenic (‑59/+294) | glmU/atpC | bifunctional N‑acetylglucosamine‑1‑phosphate uridyltransferase/glucosamine‑1‑phosphate acetyltransferase/F0F1 ATP synthase subunit epsilon |
| Reads supporting (aligned to +/- strand): ref base . (0/0); new base T (30/20); total (30/20) |
ATAGCATTATTCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑TTTTTTT‑CATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGAAAGCG > REL606/3875550‑3875693
|
aTAGCATTATTCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACa > 1:268206/1‑76 (MQ=255)
aGCATTATTCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑tt < 1:1055818/76‑1 (MQ=255)
attattCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑ttttt < 2:189986/76‑1 (MQ=255)
tattCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑ttttttt > 1:1387910/1‑76 (MQ=255)
attCAACATTCGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑tttttttt > 2:1639927/1‑75 (MQ=255)
attCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑tttttttt > 1:483232/1‑75 (MQ=255)
attCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑tttttttt > 1:388298/1‑75 (MQ=255)
cATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTTTTT‑CATCGt > 2:1597819/1‑76 (MQ=255)
tACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTTTTT‑CATCGTGa < 2:1624562/76‑1 (MQ=255)
cgcgTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTTTTT‑CATCGTGaaa < 1:506483/76‑1 (MQ=255)
cgcgTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTTTTT‑CATCGTGaaa > 1:731487/1‑76 (MQ=255)
cgTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTTTTT‑CATCGTGAAATg < 2:623306/76‑1 (MQ=255)
gTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTTTTT‑CATCGTGAAATgg > 1:939658/1‑76 (MQ=255)
gTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTTTTT‑CATCGTGAAATgg > 1:939651/1‑76 (MQ=255)
ccTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTTTTT‑CATCGTGAAATGGAc > 2:1770951/1‑76 (MQ=255)
ccTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTTTTT‑CATCGTGAAATGGAc < 2:1052582/76‑1 (MQ=255)
gACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTTTTT‑CATCGTGAAATGGACaga > 2:564592/1‑76 (MQ=255)
gACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTTTTT‑CATCGTGAAATGGACaga < 1:589774/76‑1 (MQ=255)
gTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTTTTT‑CATCGTGAAATGGACAGAGGAt < 2:239817/76‑1 (MQ=255)
gTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTTTTT‑CATCGTGAAATGGACAGAGGAt < 1:768726/76‑1 (MQ=255)
tAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTTTTT‑CATCGTGAAATGGACAGAGGATa > 2:962443/1‑76 (MQ=255)
aaTTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTTTTT‑CATCGTGAAATGGACAGAGGATaa > 1:533389/1‑76 (MQ=255)
aaTTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTTTTT‑CATCGTGAAATGGACAGAGGATaa > 2:1123137/1‑76 (MQ=255)
aTTTGAGAACGAATTTAAACCGCTTTACCTTGAAAAAACTACATTTTTTTT‑CATCGTGAAATGGACAGAGGATaaa > 2:1489474/1‑76 (MQ=255)
aTTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTTTTT‑CATCGTGAAATGGACAGAGGATaaa < 1:686995/76‑1 (MQ=255)
gagaACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTTTTT‑CATCGTGAAATGGACAGAGGATAAATTGt > 2:1490861/1‑76 (MQ=255)
agaACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTTTTT‑CATCGTGAAATGGACAGAGGATAAATTGtt > 2:833905/1‑76 (MQ=255)
gaACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTTTTT‑CATCGTGAAATGGACAGAGGATAAATTGTTc < 1:92974/76‑1 (MQ=255)
aaCGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTTTTT‑CATCGTGAAATGGACAGAGGATAAATTGTTCa < 1:174409/76‑1 (MQ=255)
aaCGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTTTTT‑CATCGTGAAATGGACAGAGGATAAATTGTTCa < 2:1301791/76‑1 (MQ=255)
cGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTTTTT‑CATCGTGAAATGGACAGAGGATAAATTGTTCAAt > 1:393318/1‑76 (MQ=255)
cGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTTTTT‑CATCGTGAAATGGACAGAGGATAAATTGTTCAAt > 1:1349782/1‑76 (MQ=255)
aaTTTAAACCGCTTCACCTTGAAAAAACTACATTTTTTTT‑CATCGTGAAATGGACAGAGGATAAATTGTTCAATaa > 1:381175/1‑76 (MQ=255)
aTTTAAACCGCTTCACCTTGAAAAAACTACATTTTTTTT‑CATCGTGAAATGGACAGAGGATAAATTGTTCAATAAc < 1:901052/76‑1 (MQ=255)
aTTTAAACCGCTTCACCTTGAAAAAACTACATTTTTTTT‑CATCGTGAAATGGACAGAGGATAAATTGTTCAATAAc < 2:1712070/76‑1 (MQ=255)
tttAAACCGCTTCACCTTGAAAAAACTACATTTTTTTT‑CATCGTGAAATGGACAGAGGATAAATTGTTCAATAACg < 2:42346/76‑1 (MQ=255)
tAAACCGCTTCACCTTGAAAAAACTACATTTTTTTT‑CATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGa < 2:299197/76‑1 (MQ=255)
tAAACCGCTTCACCTTGAAAAAACTACATTTTTTTT‑CATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGa > 1:1274173/1‑76 (MQ=255)
aaaCCGCTTCACCTTGAAAAAACTACATTTTTTTT‑CATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGAt > 1:1555791/1‑76 (MQ=255)
aCCGCTTCACCTTGAAAAAACTACATTTTTTTT‑CATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTa < 1:1135237/76‑1 (MQ=255)
cTTCACCTTGAAAAAACTACATTTTTTTT‑CATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATccc < 2:1815383/76‑1 (MQ=255)
cTTCACCTTGAAAAAACTACATTTTTTTT‑CATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATccc > 1:268683/1‑76 (MQ=255)
tCACCTTGAAAAAACTTCATTTTTTTT‑CATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCg > 2:407839/1‑76 (MQ=255)
tCACCTTGAAAAAACTACATTTTTTTT‑CATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCg > 2:196027/1‑76 (MQ=255)
cACCTTGAAAAAACTACATTTTTTTT‑CATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGc > 1:1746715/1‑76 (MQ=255)
ccTTGAAAAAACTACATTTTTTTT‑CATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTg > 2:1514396/1‑76 (MQ=255)
ccTTGAAAAAACTACATTTTTTTT‑CATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTg > 1:1272507/1‑76 (MQ=255)
ttGAAAAAACTACATTTTTTTT‑CATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGAc > 2:190011/1‑76 (MQ=255)
tGAAAAAACTACATTTTTTTT‑CATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACg < 1:1701725/76‑1 (MQ=255)
tGAAAAAACTACATTTTTTTT‑CATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACg < 2:179809/76‑1 (MQ=255)
aaaaaaCTACATTTTTTTT‑CATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGaa > 1:125585/1‑76 (MQ=255)
aaaaaCTACATTTTTTTT‑CATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGaaa < 1:775268/76‑1 (MQ=255)
aaaaCTACATTTTTTTT‑CATCGTGAAATGGACAGATGATAAATTGTTCAATAACGGATTATCCCCGCTGACGAAAg > 2:1623441/1‑76 (MQ=255)
aaaaCTACATTTTTTTT‑CATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGAAAg > 2:1095223/1‑76 (MQ=255)
aaaaCTACATTTTTTTT‑CATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGAAAg > 2:152415/1‑76 (MQ=255)
aaaaCTACATTTTTTTT‑CATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGAAAg > 1:84082/1‑76 (MQ=255)
aaCTACATTTTTTTT‑CATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGAAAgcg > 2:1455521/1‑76 (MQ=255)
aaCTACA‑TTTTTTTACATCGTGAAATGGACAGAGGATAAATTGTTCAATAGCGGATTATCCCCGCTGACGAAAgcg < 2:347433/76‑1 (MQ=255)
|
ATAGCATTATTCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑TTTTTTT‑CATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGAAAGCG > REL606/3875550‑3875693
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
