Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A69 F1 I1 R1
|
20 |
59.3 |
3764421 |
95.9% |
3610079 |
75.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
REL606 |
3,875,632 |
(T)7→8 |
intergenic (‑66/+287) |
glmU ← / ← atpC |
bifunctional N‑acetylglucosamine‑1‑phosphate uridyltransferase/glucosamine‑1‑phosphate acetyltransferase/F0F1 ATP synthase subunit epsilon |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | REL606 | 3,875,625 | 1 | . | T | 100.0%
| 282.3
/ NA
| 69 | intergenic (‑59/+294) | glmU/atpC | bifunctional N‑acetylglucosamine‑1‑phosphate uridyltransferase/glucosamine‑1‑phosphate acetyltransferase/F0F1 ATP synthase subunit epsilon |
| Reads supporting (aligned to +/- strand): ref base . (0/0); new base T (30/39); total (30/39) |
ATAGCATTATTCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTAC‑A‑TTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGAAAGCGCC > REL606/3875550‑3875695
|
aTAGCATTATTCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTAC‑a > 1:144434/1‑76 (MQ=255)
aGCATTATTCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTAC‑A‑tt > 2:460689/1‑76 (MQ=255)
aGCATTATTCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTAC‑A‑tt < 1:1873076/76‑1 (MQ=255)
aGCATTATTCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTAC‑A‑tt > 2:1190951/1‑76 (MQ=255)
aGCATTATTCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTAC‑A‑tt > 2:1190936/1‑76 (MQ=255)
gCATTATTCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTAC‑A‑ttt > 2:1756621/1‑76 (MQ=255)
attCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTAC‑A‑tttttttt > 1:1792884/1‑75 (MQ=255)
attCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTAC‑A‑tttttttt < 2:1411754/76‑2 (MQ=255)
cATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTAC‑ATTTTTTTTCATCGt < 1:366059/76‑1 (MQ=255)
aTACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTAC‑ATTTTTTTTCATCGTg < 1:1802588/76‑1 (MQ=255)
aTACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTAC‑ATTTTTTTTCATCGTg < 1:720784/76‑1 (MQ=255)
aCGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTAC‑ATTTTTTTTCATCGTGaa < 1:1822713/76‑1 (MQ=255)
aCGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTAC‑ATTTTTTTTCATCGTGaa < 1:1270481/76‑1 (MQ=255)
aCGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTAC‑ATTTTTTTTCATCGTGaa > 1:1600020/1‑76 (MQ=255)
gcgTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTAC‑ATTTTTTTTCATCGTGAAAt < 2:839940/76‑1 (MQ=255)
cgTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTAC‑ATTTTTTTTCATCGTGAAATg > 2:1136274/1‑76 (MQ=255)
tCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTAC‑ATTTTTTTTCATCGTGAAATGGa < 1:207838/76‑1 (MQ=255)
ccTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTAC‑ATTTTTTTTCATTGTGAAATGGAc < 1:90861/76‑1 (MQ=255)
ccTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTAC‑ATTTTTTTTCATCGTGAAATGGAc > 1:697333/1‑76 (MQ=255)
ccTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTAC‑ATTTTTTTTCATCGTGAAATGGAc > 1:697315/1‑76 (MQ=255)
ccTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTAC‑ATTTTTTTTCATCGTGAAATGGAc < 2:373547/76‑1 (MQ=255)
ccTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTAC‑ATTTTTTTTCATCGTGAAATGGAc > 2:412038/1‑76 (MQ=255)
cTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTAC‑ATTTTTTTTCATCGTGAAATGGACa < 2:1536105/76‑1 (MQ=255)
cTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTAC‑ATTTTTTTTCATCGTGAAATGGACa < 2:46679/76‑1 (MQ=255)
cTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTAC‑ATTTTTTTTCATCGTGAAATGGACa < 2:554016/76‑1 (MQ=255)
cTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTAC‑ATTTTTTTTCATCGTGAAATGGACa < 2:987371/76‑1 (MQ=255)
cTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTAC‑ATTTTTTTTCATCGTGAAATGGACa < 1:1611118/76‑1 (MQ=255)
tGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTAC‑ATTTTTTTTCATCGTGAAATGGACag < 2:688875/76‑1 (MQ=255)
tGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTAC‑ATTTTTTTTCATCGTGAAATGGACag < 1:1109642/76‑1 (MQ=255)
tGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTAC‑ATTTTTTTTCATCGTGAAATGGACag < 2:1267723/76‑1 (MQ=255)
tGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTAC‑ATTTTTTTTCATCGTGAAATGGACag > 1:896306/1‑76 (MQ=255)
tGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTAC‑ATTTTTTTTCATCGTGAAATGGACag < 1:1623008/76‑1 (MQ=255)
aCTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTAC‑ATTTTTTTTCATCGTGAAATGGACagag > 2:1399016/1‑76 (MQ=255)
cTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTAC‑ATTTTTTTTTATCGTGAAATGGACAGAgg < 1:751114/76‑1 (MQ=255)
tGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTAC‑ATTTTTTTTCATCGTGAAATGGACAGAGGa < 1:1278215/76‑1 (MQ=255)
gTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTAC‑ATTTTTTTTCATCGTGAAATGGACAGAGGAt > 2:1599773/1‑76 (MQ=255)
aaTTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTAC‑ATTTTTTTTCATCGTGAAATGGACAGAGGATaa < 1:212655/76‑1 (MQ=255)
tttGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTAC‑ATTTTTTTTCATCGTGAAATGGACAGAGGATAAAt < 1:701937/76‑1 (MQ=255)
tttGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTAC‑ATTTTTTTTCATCGTGAAATGGACAGAGGATAAAt < 1:701935/76‑1 (MQ=255)
ttGAGGACGAATTTAAACCGCTTCACCTTGAAAAAACTAC‑ATTTTTTTTCATCGTGAAATGGACAGAGGATAAAtt > 1:1371219/1‑76 (MQ=255)
ttGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTAC‑ATTTTTTTTCATCGTGAAATGGACAGAGGATAAAtt < 1:1722566/76‑1 (MQ=255)
tGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTAC‑ATTTTTTTTCATCGTGAAATGGACAGAGGATAAATTg < 2:504215/76‑1 (MQ=255)
gagaACGAATTTAAACCGCTTCACCTTGAAAAAACTAC‑ATTTTTTTTCATCGTGAAATGGACAGAGGATAAATTGt > 1:1055490/1‑76 (MQ=255)
gaACGAATTTAAACCGCTTCACCTTGAAAAAACTAC‑ATTTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTc < 1:1059410/76‑1 (MQ=255)
atcGAATTTAACCCGCTTCACCTTGAAAAAACTACGT‑TTTTTTTCAACGTGATCCGGACTGTGGACAAATAGTCCa > 2:1503332/3‑76 (MQ=255)
aaCGAATTTAAACCGCTTCACCTTGAAAAAACTAC‑ATTTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCa < 2:969222/76‑1 (MQ=255)
aaCGAATTTAAACCGCTTCACCTTGAAAAAACTAC‑ATTTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCa < 1:470614/76‑1 (MQ=255)
aaCGAATTTAAACCGCTTCACCTTGAAAAAACTAC‑ATTTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCa < 2:1762856/76‑1 (MQ=255)
aCGAATTTAAACCGCTTCACCTTGAAAAAACTAC‑ATTTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCaa < 1:1044870/76‑1 (MQ=255)
aCGAATTTAAACCGCTTCACCTTGAAAAAACTAC‑ATTTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCaa < 1:447048/76‑1 (MQ=255)
cGAATTTAAACCGCTTCACCTTGAAAAAACTAC‑ATTTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAAt < 1:1165738/76‑1 (MQ=255)
gAATTTAAACCGCTTCACCTTGAAAAAACTAC‑ATTTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATa < 1:1676171/76‑1 (MQ=255)
aaTTTAAACCGCTTCACCTTGAAAAAACTAC‑ATTTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATaa > 1:1881184/1‑76 (MQ=255)
aTTTAAACCGCTTCACCTTGAAAAAACTAC‑ATTTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAAc > 1:891807/1‑76 (MQ=255)
tttAAACCGCTTCACCTTGAAAAAACTAC‑ATTTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACg > 1:460974/1‑76 (MQ=255)
tttAAACCGCTTCACCTTGAAAAAACTAC‑ATTTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACg < 2:1413107/76‑1 (MQ=255)
ttAAACCGCTTCACCTTGAAAAAACTAC‑ATTTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACgg > 2:1684472/1‑76 (MQ=255)
aaaCCGCTTCACCTTGAAAAAACTAC‑ATTTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGAt < 1:1367659/76‑1 (MQ=255)
aaaCCGCTTCACCTTGAAAAAACTAC‑ATTTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGAt > 1:1444348/1‑76 (MQ=255)
aCCGCTTCACCTTGAAAAAACTAC‑ATTTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTa < 1:1691188/76‑1 (MQ=255)
gCTTCACCTTGAAAAAACTAC‑ATTTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATcc > 2:1879224/1‑76 (MQ=255)
cTTCACCTTGAAAAAACTAC‑ATTTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAAGGGATTATccc > 1:1358223/1‑76 (MQ=255)
cTTCACCTTGAAAAAACTAC‑ATTTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATccc > 2:1291000/1‑76 (MQ=255)
tCACCTTGAAAAAACTAC‑ATTTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCg > 2:146586/1‑76 (MQ=255)
cACCTTGAAAAAACTAC‑ATTTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGc > 1:1296069/1‑76 (MQ=255)
cACCTTGAAAAAACTAC‑ATTTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGc > 1:1307928/1‑76 (MQ=255)
cACCTTGAAAAAACTAC‑ATTTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGc > 1:599504/1‑76 (MQ=255)
ttGAAAAAACTAC‑ATTTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGAc < 1:1281046/76‑1 (MQ=255)
ttGAAAAAACTAC‑ATTTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGAc > 1:1417856/1‑76 (MQ=255)
ttGAAAAAACTAC‑ATTTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGAc > 1:82925/1‑76 (MQ=255)
gAAAAAACTAC‑ATTTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGa > 1:982685/1‑76 (MQ=255)
aaaaCTAC‑ATTTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGAAAg < 1:1516515/76‑1 (MQ=255)
aaaCTAC‑ATTTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGAAAgc > 2:1854876/1‑76 (MQ=255)
aaCTAC‑ATTTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGAAAgcg < 1:75228/76‑1 (MQ=255)
aCTAC‑ATTTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGAAAgcgc > 1:237744/1‑76 (MQ=255)
cTAC‑ATTTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGAAAGCGcc > 1:609575/1‑76 (MQ=255)
cTAC‑ATTTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGAAAGCGcc > 1:180667/1‑76 (MQ=255)
cTAC‑ATTTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGAAAGCGcc > 1:477695/1‑76 (MQ=255)
|
ATAGCATTATTCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTAC‑A‑TTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGAAAGCGCC > REL606/3875550‑3875695
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
