Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A4 F1 I1 R1
|
15 |
35.6 |
2322208 |
94.1% |
2185197 |
75.8 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
REL606 |
3,875,632 |
(T)7→8 |
intergenic (‑66/+287) |
glmU ← / ← atpC |
bifunctional N‑acetylglucosamine‑1‑phosphate uridyltransferase/glucosamine‑1‑phosphate acetyltransferase/F0F1 ATP synthase subunit epsilon |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | REL606 | 3,875,625 | 1 | . | T | 100.0%
| 108.2
/ NA
| 30 | intergenic (‑59/+294) | glmU/atpC | bifunctional N‑acetylglucosamine‑1‑phosphate uridyltransferase/glucosamine‑1‑phosphate acetyltransferase/F0F1 ATP synthase subunit epsilon |
| Reads supporting (aligned to +/- strand): ref base . (0/0); new base T (14/16); total (14/16) |
TAGCATTATTCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑TT‑TTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGAA > REL606/3875551‑3875689
|
tAGCATTATTCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑t > 1:944028/1‑76 (MQ=255)
tAGCATTATTCAACATACGCGTCCTGACTCTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑t > 1:1143407/1‑76 (MQ=255)
cATTATTCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑tt‑tt < 1:703828/76‑1 (MQ=255)
cATTATTCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑tt‑tt < 2:808388/76‑1 (MQ=255)
tattCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑tt‑ttttt < 2:329849/76‑1 (MQ=255)
tattCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑tt‑ttttt > 1:302532/1‑76 (MQ=255)
tattCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCACTTCACCTTGAAAAAACTACA‑tt‑ttttt < 2:1123599/76‑1 (MQ=255)
tCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑tt‑ttttttca > 2:759240/1‑73 (MQ=255)
aCGCGTCCTGACTGTATTTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTT‑TTTTTCATCGTGaa < 2:765358/76‑1 (MQ=255)
aCGCGTCCTGACTGTAATTTGAGAACGCATTTAAACCGCTTCACCTTGAAAAAACTACATTT‑TTTTTCATCGTGaa < 1:655728/76‑1 (MQ=255)
aCGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTT‑TTTTTCATCGTGan < 1:413748/76‑2 (MQ=255)
aCGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTT‑TTTTTCATCGTGaa > 1:344618/1‑76 (MQ=255)
aCGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTT‑TTTTTCATCGTGaa < 1:860056/76‑1 (MQ=255)
cgcgTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTT‑TTTTTCATCGTGaaa > 2:451223/1‑76 (MQ=255)
cgcgTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTT‑TTTTTCATCGTGaaa < 2:832880/76‑1 (MQ=255)
tCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTT‑TTTTTCATCGTGAAATGGa < 1:317854/76‑1 (MQ=255)
cTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTT‑TTTTTCATCGTGAAATGGACa < 2:944028/76‑1 (MQ=255)
cTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACGACATTT‑TTTTTCATCGTGAAATGGACa < 2:1143405/76‑1 (MQ=255)
tGACTGTAATTTAAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTT‑TTTTTCATCGTGAAATGGACag > 2:633597/1‑76 (MQ=255)
tGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTT‑TTTTTCATCGTGAAATGGACAGAGGa > 1:372689/1‑76 (MQ=255)
gTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTT‑TTTTTCATCGTGAAATGGACAGAGGAt > 2:83841/1‑76 (MQ=255)
aaTTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTT‑TTTTTCAGCGTGAAATGGACAGAGGATaa > 2:969747/1‑76 (MQ=255)
aaCGAATTTAAACCGCTTCACCTTGAAAAAACTACATTT‑TTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCa < 2:794192/76‑1 (MQ=255)
aaCGAATTTAAACCGCTTCACCTTGAAAAAACTACATTT‑TTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCa < 1:541708/76‑1 (MQ=255)
aaCGAATTTAAACCGCTTCACCTTGAAAAAACTACATTT‑TTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCa > 2:53500/1‑76 (MQ=255)
aCGAATTTAAACCGCTTCACCTTGAAAAAACTACATTT‑TTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCaa < 2:108776/76‑1 (MQ=255)
gtaTTTAAACCACTTGAGCTTGAAAAAACTGCA‑TTCTTTTTCNTNGTGAACTNGACAGAGGATAAATTGTTCAATa < 1:1077110/74‑1 (MQ=255)
gAATTTAAACCGCTTCACCTTGAAAAAACTACATTT‑TTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATa < 2:303890/76‑1 (MQ=255)
aaTTTAAACCGCTTCACCTTGAAAAAACTACATTT‑TTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATaa < 2:40562/76‑1 (MQ=255)
aTTTAAACCGCTTCACCTTGAAAAAACTACATTT‑TTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAAc < 1:859986/76‑1 (MQ=255)
tttAAACCGCTTCACCTTGAAAAAACTACATTT‑TTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACg > 2:359076/1‑76 (MQ=255)
aaaCCGCTTCACCTTGAAAAAACTACATTT‑TTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGAt > 1:645822/1‑76 (MQ=255)
aCCGCTTCACCTTGAAAAAACTACATTT‑TTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTa > 1:747041/1‑76 (MQ=255)
cGCTTCACCTTGAAAAAACTACATTT‑TTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATc < 1:83841/76‑1 (MQ=255)
aCCCTGAAAAAACTACATTT‑TTTTTCATCGTGAAATGGACAGAGGATAANTTGTTCAATAACGGATTATCCCCGCt < 2:994937/76‑1 (MQ=255)
ctagAAAAAACTACATTT‑TTTTTCATNGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGATGa > 2:999319/4‑76 (MQ=255)
cTTGAAAAAACTACATTT‑TTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGa > 1:1155585/1‑76 (MQ=255)
tGAAAAAACTACATTT‑TTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACg > 1:862068/1‑76 (MQ=255)
aaaaaaCTACATTT‑TTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGaa > 1:524042/1‑76 (MQ=255)
|
TAGCATTATTCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑TT‑TTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGAA > REL606/3875551‑3875689
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
