Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A112 F1 I1 R1
|
17 |
249.1 |
16570612 |
93.0% |
15410669 |
76.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
REL606 |
3,875,632 |
(T)7→8 |
intergenic (‑66/+287) |
glmU ← / ← atpC |
bifunctional N‑acetylglucosamine‑1‑phosphate uridyltransferase/glucosamine‑1‑phosphate acetyltransferase/F0F1 ATP synthase subunit epsilon |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | REL606 | 3,875,625 | 1 | . | T | 98.4%
| 742.3
/ 2.7
| 183 | intergenic (‑59/+294) | glmU/atpC | bifunctional N‑acetylglucosamine‑1‑phosphate uridyltransferase/glucosamine‑1‑phosphate acetyltransferase/F0F1 ATP synthase subunit epsilon |
| Reads supporting (aligned to +/- strand): ref base . (1/2); new base T (69/111); total (70/113) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 232 total aligned reads displayed.
ATAGCATTATTCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTAC‑A‑T‑TTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGAAAGCGCC > REL606/3875550‑3875695
|
aTAGCATTATTCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTAC‑a < 1:8241792/76‑1 (MQ=255)
aTAGCATTATTCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTAC‑a > 1:7901960/1‑76 (MQ=255)
aGCATTATTCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTAC‑A‑t‑t > 2:6660277/1‑76 (MQ=255)
gCATTATTCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTAC‑A‑t‑tt < 2:705666/76‑1 (MQ=255)
cATTATTCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTAC‑A‑t‑ttt > 1:6465236/1‑76 (MQ=255)
cATTATTCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTAC‑A‑t‑ttt > 1:7535998/1‑76 (MQ=255)
tattCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTAC‑A‑t‑tttttt > 2:305319/1‑76 (MQ=255)
tattCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTAC‑A‑t‑tttttt < 2:7193290/76‑1 (MQ=255)
tattCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTAC‑A‑t‑tttttt > 2:2156603/1‑76 (MQ=255)
attCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTAC‑A‑t‑ttttttt > 1:1867897/1‑75 (MQ=255)
attCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTAC‑A‑t‑ttttttt > 2:6884919/1‑75 (MQ=255)
attCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTAC‑A‑t‑ttttttt > 2:3609147/1‑75 (MQ=255)
ttCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTAC‑A‑t‑tttttttc > 1:8078132/1‑74 (MQ=255)
ttCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTAC‑A‑t‑tttttttc > 2:7943840/1‑74 (MQ=255)
ttCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTAC‑A‑t‑tttttttc < 2:7879614/76‑3 (MQ=255)
ttCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTAC‑A‑t‑tttttttc < 2:4018263/76‑3 (MQ=255)
ttCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTAC‑A‑t‑tttttttc > 1:3995195/1‑74 (MQ=255)
tCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTAC‑A‑t‑tttttttca < 1:6995441/76‑4 (MQ=255)
tCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTAC‑A‑t‑tttttttca < 1:3623761/76‑4 (MQ=255)
aCATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTAC‑ATT‑TTTTTTCATCg < 1:1100232/76‑1 (MQ=255)
cATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTAC‑ATT‑TTTTTTCATCGt > 2:2350319/1‑76 (MQ=255)
aTACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTAC‑ATT‑TTTTTTCATCGTg < 2:2774950/76‑1 (MQ=255)
tACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTAC‑ATT‑TTTTTTCATCGTGa > 1:4747818/1‑76 (MQ=255)
tACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTAC‑ATT‑TTTTTTCATCGTGa < 1:5194857/76‑1 (MQ=255)
aCGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTAC‑ATT‑TTTTTTCATCGTGaa < 2:5186448/76‑1 (MQ=255)
cgcgTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTAC‑ATT‑TTTTTTCATCGTGaaa < 1:5274347/76‑1 (MQ=255)
ttcTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTAC‑ATT‑TTTTTTCATCGTGAAATGGa < 2:824423/74‑1 (MQ=255)
tCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTAC‑ATT‑TTTTTTCATCGTGAAATGGa < 2:4279128/76‑1 (MQ=255)
tCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTAC‑ATT‑TTTTTTCATCGTGAAATGGa > 1:8152649/1‑76 (MQ=255)
tCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTAC‑ATT‑TTTTTTCATCGTGAAATGGa < 1:7768330/76‑1 (MQ=255)
tCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTAC‑ATT‑TTTTTTCATCGTGAAATGGa > 2:5649932/1‑76 (MQ=255)
ccTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTAC‑ATT‑TTTTTTCATCGTGAAATGGAc < 1:4642351/76‑1 (MQ=255)
ccTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTAC‑ATT‑TTTTTTCATCGTGAAATGGAc < 2:450941/76‑1 (MQ=255)
ccTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTAC‑ATT‑TTTTTTCATCGTGAAATGGAc < 1:7877103/76‑1 (MQ=255)
ccTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTAC‑ATT‑TTTTTTCATCGTGAAATGGAc > 1:6023155/1‑76 (MQ=255)
ccTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTAC‑ATT‑TTTTTTCATCGTGAAATGGAc < 1:6424489/76‑1 (MQ=255)
cTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTAC‑ATT‑TTTTTTCATCGTGAAATGGACa < 2:4224681/76‑1 (MQ=255)
cTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTAC‑ATT‑TTTTTTCATCGTGAAATGGACa < 1:3158898/76‑1 (MQ=255)
tGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTAC‑ATT‑TTTTTTCATCGTGAAATGGACag < 2:3408493/76‑1 (MQ=255)
tGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCATGAAAAAACTAC‑ATT‑TTTTTTCATCGTGAAATGGACag > 1:4246319/1‑76 (MQ=255)
tGACTGGAATTTGAGAACGAATTTAAACGGCTTCACCTTGAAAAAACTAC‑ATT‑TTTTTTCATCGTGAAATGGACag > 1:3798045/1‑76 (MQ=255)
gACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTAC‑ATT‑TTTTTTCATCGTGAAATGGACaga < 1:145246/76‑1 (MQ=255)
aCTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTAC‑ATT‑TTTTTTCATCGTGAAATGGACagag < 1:4090816/76‑1 (MQ=255)
aCTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTAC‑ATT‑TTTTTTCATCGTGAAATGGACagag < 2:7367716/76‑1 (MQ=255)
cTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTAC‑ATT‑TTTTTTCATCGTGAAATGGACAGAgg < 2:483829/76‑1 (MQ=255)
cTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTAC‑ATT‑TTTTTTCATCGTGAAATGGACAGAgg < 2:3723901/76‑1 (MQ=255)
tGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTAC‑ATT‑TTTTTTCATCGTGAAATGGACAGAGGa > 1:4145671/1‑76 (MQ=255)
tAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTAC‑ATT‑TTTTTTCATCGTGAAATGGACAGAGGATa < 2:6522686/76‑1 (MQ=255)
tAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTAC‑ATT‑TTTTTTCATCGTGAAATGGACAGAGGATa > 2:8046875/1‑76 (MQ=255)
aaTTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTAC‑ATT‑TTTTTTCATCGTGAAATGGACAGAGGATaa < 2:8191546/76‑1 (MQ=255)
aTTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTAC‑ATT‑TTTTTTCATCGTGAAATGGACAGAGGATaaa < 1:2477330/76‑1 (MQ=255)
aTTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTAC‑ATT‑TTTTTTCATCGTGAAATGGACAGAGGATaaa < 1:913601/76‑1 (MQ=255)
aTTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTAC‑ATT‑TTTTTTCATCGTGAAATGGACAGAGGATaaa > 1:6073718/1‑76 (MQ=255)
aTTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTAC‑ATT‑TTTTTTCATCGTGAAATGGACAGAGGATaaa < 2:6931244/76‑1 (MQ=255)
aTTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTAC‑ATT‑TTTTTTCATCGTGAAATGGACAGAGGATaaa < 1:6166125/76‑1 (MQ=255)
tttGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTAC‑ATT‑TTTTTTCATCGTGAAATGGACAGAGGATAAAt > 1:7971102/1‑76 (MQ=255)
tttGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTAC‑ATT‑TTTTTTCATCGTGAAATGGACAGAGGATAAAt < 1:4366326/76‑1 (MQ=255)
ttGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTAC‑ATT‑TTTTTTCATCGTGAAATGGACAGAGGATAAAtt < 1:7588088/76‑1 (MQ=255)
ttGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTAC‑ATT‑TTTTTTCATCGTGAAATGGACAGAGGATAAAtt < 2:1926266/76‑1 (MQ=255)
tGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTAC‑ATT‑TTTTTTCATCGTGAAATGGACAGAGGATAAATTg < 1:7407192/76‑1 (MQ=255)
tGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTAC‑ATT‑TTTTTTCATCGTGAAATGGACAGAGGATAAATTg > 1:2205796/1‑76 (MQ=255)
tGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTAC‑ATT‑TTTTTTCATCGTGAAATGGACAGAGGATAAATTg > 1:8025513/1‑76 (MQ=255)
gagaACGAATTTAAACCGCTTCACCTTGAAAAAACTAC‑ATT‑TTTTTTCATCGTGAAATGGACAGAGGATAAATTGt > 1:6749965/1‑76 (MQ=255)
gaACGAATTTAAACCGCTTCACCTTGAAAAAACTAC‑ATT‑TTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTc < 1:5051318/76‑1 (MQ=255)
aaCGAATTTAAACCGCTTCACCTTGAAAAAACTAC‑ATT‑TTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCa < 1:6820975/76‑1 (MQ=255)
aaCGAATTTAAACCGCTTCACCTTGAAAAAACTAC‑ATT‑TTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCa > 2:3529119/1‑76 (MQ=255)
cGAATTTAAACCGCTTCACCTTGAAAAAACTAC‑ATT‑TTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAAt < 2:911511/76‑1 (MQ=255)
cGAATTTAAACCGCGTCACCTTGAAAAAACTAC‑ATT‑TTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAAt < 1:2075740/76‑1 (MQ=255)
gAATTTAAACCGCTTCACCTTGAAAAAACTAC‑ATT‑TTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATa < 1:1654996/76‑1 (MQ=255)
gAATTTAAACCGCTTCACCTTGAAAAAACTAC‑ATT‑TTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATa < 1:3292701/76‑1 (MQ=255)
aagttAAACCGCTTCACCTTGAAAAAACTAC‑A‑TGTTTTTTCATCGTGAAATGGATAGAGGATAAATTGTTCAATaa < 2:8069960/73‑1 (MQ=255)
aaTTTAAACCGCTTCACCTTGAAAAAACTAC‑ATT‑TTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATaa < 2:3871089/76‑1 (MQ=255)
aaTTTAAACCGCTTCACCTTGAAAAAACTAC‑ATT‑TTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATaa < 2:7827614/76‑1 (MQ=255)
aaTTTAAACCGCTTCACCTTGAAAAAACTAC‑ATT‑TTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATaa < 1:5303623/76‑1 (MQ=255)
aTTTAAACCGCTTCACCTTGAAAAAACTAC‑ATT‑TTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAAc < 2:2644679/76‑1 (MQ=255)
ttAAACCGCTTCACCTTGAAAAAACTAC‑ATT‑TTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACgg > 2:3202879/1‑76 (MQ=255)
tAAACCGCTTCACCTTGAAAAAACTAC‑ATT‑TTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGa < 1:1168897/76‑1 (MQ=255)
tAAACCGCTTCACCTTGAAAAAACTAC‑ATT‑TTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGa > 2:6113524/1‑76 (MQ=255)
tAAACCGCTTCACCTTGAAAAAACTAC‑ATT‑TTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGa > 1:6955739/1‑76 (MQ=255)
aaaCCGCTTCACCTTGAAAAAACTAC‑ATT‑TTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGAt > 1:4174789/1‑76 (MQ=255)
aaCCGCTTCACCTTGAAAAAACTACTT‑T‑TTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGAtt < 1:6625146/76‑1 (MQ=255)
aCCGCTTCACCTTGAAAAAACTAC‑ATT‑TTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTa < 2:5011486/76‑1 (MQ=255)
cGCTTCACCTTGAAAAAACTAC‑ATT‑TTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATc > 2:1843279/1‑76 (MQ=255)
gCTTCACCTTGAAAAAACTAC‑ATT‑TTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATcc > 1:6806698/1‑76 (MQ=255)
gCTTCACCTTGAAAAAACTAC‑ATT‑TTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATcc < 2:7981337/76‑1 (MQ=255)
tCACCTTGAAAAAACTAC‑ATT‑TTTTTTCATCGTGAAATGGACACAGGATAAATTGTTCAATAACGGATTATCCCCg < 1:7719989/76‑1 (MQ=255)
cTTGAAAAAACTAC‑ATT‑TTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGa < 1:4945406/76‑1 (MQ=255)
ttGAAAAAACTAC‑ATT‑TTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGAc < 2:1046707/76‑1 (MQ=255)
tGAAAAAACTAC‑ATT‑TTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACg > 2:5254765/1‑76 (MQ=255)
tGAAAAAACTAC‑ATT‑TTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACg > 1:1389792/1‑76 (MQ=255)
tGAAAAAACTAC‑ATT‑TTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACg > 1:5423432/1‑76 (MQ=255)
tGAAAAAACTAC‑ATT‑TTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACg > 1:2865785/1‑76 (MQ=255)
gAAAAAACTAC‑ATT‑TTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGa < 2:2299637/76‑1 (MQ=255)
aaaaaCTAC‑ATT‑TTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGaaa < 2:120792/76‑1 (MQ=255)
aaaaaCTAC‑ATT‑TTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGaaa > 2:1562332/1‑76 (MQ=255)
aaaaaCTAC‑ATT‑TTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGaaa < 2:6438704/76‑1 (MQ=255)
aaaaCTTC‑ATT‑TTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGAAAg < 2:1401833/76‑1 (MQ=255)
aaaaCTAC‑ATT‑TTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGAAAg < 1:2192782/76‑1 (MQ=255)
aaaaCTAC‑ATT‑TTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGAAAg < 2:5963558/76‑1 (MQ=255)
aCTAC‑A‑T‑TTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGAAAGCGcc > 2:7487833/1‑76 (MQ=255)
|
ATAGCATTATTCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTAC‑A‑T‑TTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGAAAGCGCC > REL606/3875550‑3875695
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
