Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A74 F1 I1 R1
|
16 |
49.9 |
3507628 |
96.2% |
3374338 |
75.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
REL606 |
3,875,632 |
(T)7→8 |
intergenic (‑66/+287) |
glmU ← / ← atpC |
bifunctional N‑acetylglucosamine‑1‑phosphate uridyltransferase/glucosamine‑1‑phosphate acetyltransferase/F0F1 ATP synthase subunit epsilon |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | REL606 | 3,875,625 | 1 | . | T | 95.9%
| 187.3
/ 0.6
| 49 | intergenic (‑59/+294) | glmU/atpC | bifunctional N‑acetylglucosamine‑1‑phosphate uridyltransferase/glucosamine‑1‑phosphate acetyltransferase/F0F1 ATP synthase subunit epsilon |
| Reads supporting (aligned to +/- strand): ref base . (1/1); new base T (22/25); total (23/26) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.98e-01 |
ATAGCATTATTCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑TTTTTTT‑CATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGAAAGCGCC > REL606/3875550‑3875695
|
aTAGCATTATTCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACa < 1:176388/76‑1 (MQ=255)
aGCATTATTCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑tt > 1:1726177/1‑76 (MQ=255)
gCATTATTCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑ttt < 1:202734/76‑1 (MQ=255)
cATTATTCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑tttt < 2:1100630/76‑1 (MQ=255)
tattCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑ttttttt > 2:1068992/1‑76 (MQ=255)
ntCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑ttttttttc > 1:232718/2‑74 (MQ=255)
aCATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTTTTT‑CATCg < 2:693554/76‑1 (MQ=255)
aTACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTTTTT‑CATCGTg < 2:1621056/76‑1 (MQ=255)
aTACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTTTTT‑CATCGTg < 2:611784/76‑1 (MQ=255)
tACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTTTTT‑CATCGTGa < 2:1719008/76‑1 (MQ=255)
aCGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTTTTT‑CATCGTGaa > 2:15855/1‑76 (MQ=255)
aCGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTTTTT‑CATCGTGaa < 1:707986/76‑1 (MQ=255)
aCGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTTTTT‑CATCGTGaa > 1:1392946/1‑76 (MQ=255)
gcgTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTTTTT‑CATCGTGAAAt > 1:80969/1‑76 (MQ=255)
cgTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTTTTT‑CATCGTGAAATg > 1:902564/1‑76 (MQ=255)
gTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTTTTT‑CATCGTGAAATgg < 1:595680/76‑1 (MQ=255)
gTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTTTTT‑CATCGTGAAATgg < 2:942219/76‑1 (MQ=255)
ccTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTTTTT‑CATCGTGAAATGGAc < 2:277541/76‑1 (MQ=255)
ccTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTTTTT‑CATCGTGAAATGGAc < 1:1674343/76‑1 (MQ=255)
tGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTTTTT‑CATCGTGAAATGGACag < 1:163474/76‑1 (MQ=255)
cTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTTTTT‑CATCGTGAAATGGACAGAgg > 2:86785/1‑76 (MQ=255)
gTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTTTTT‑CATCGTGAAATGGACAGAGGAt > 2:190455/1‑76 (MQ=255)
aaTTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTTTTT‑CATCGTGAAATGGACAGAGGATaa < 1:1729981/76‑1 (MQ=255)
aaTTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTTTTT‑CATCGTGAAATGGACAGAGGATaa < 1:759671/76‑1 (MQ=255)
aTTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTTTTT‑CATCGTGAAATGGACAGAGGATaaa < 2:843432/76‑1 (MQ=255)
agaACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTTTTT‑CATCGTGAAATGGACAGAGGATAAATTGtt < 2:1726177/76‑1 (MQ=255)
gaACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTTTTT‑CATCGTGAAATGGACAGAGGATAAATTGTTc < 1:1653827/76‑1 (MQ=255)
aaCGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTTTTT‑CATCGTGAAATGGACAGAGGATAAATTGTTCa < 1:1555511/76‑1 (MQ=255)
aCGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTTTTT‑CATCGTGAAATGGACAGAGGATAAATTGTTCaa < 1:50503/76‑1 (MQ=255)
cGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTTTTT‑CATCGTGAAATGGACAGAGGATAAATTGTTCAAt > 1:201133/1‑76 (MQ=255)
gAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTTTTT‑CATCGTGAAATGGACAGAGGATAAATTGTTCAATa < 2:237877/76‑1 (MQ=255)
aaTTTAAACCGCTTCACCTTGAAAAAACTACATTTTTTTT‑CCTCGTGAAATGGACAGAAGATAAAATTTTtaataa > 1:1509421/1‑76 (MQ=255)
aaTTTAAACCGCTTCACCTTGAAAAAACTACATTTTTTTT‑CATCGTGAAATGGACAGAGGATAAATTGTTCAATaa < 1:540835/76‑1 (MQ=255)
tttAAACCGCTTCACCTTGAAAAAACTACATTTTTTTT‑CATCGTGAAATGGACAGAGGATAAATTGTTCAATAACg > 1:1680704/1‑76 (MQ=255)
tttAAACCGCTTCACCTTGAAAAAACTACATTTTTTTT‑CATCGTGAAATGGACAGAGGATAAATTGTTCAATAACg < 2:80969/76‑1 (MQ=255)
ttAAACCGCTTCACCTTGAAAAAACTACATTTTTTTT‑CATCGTGAAATGGACAGAGGATAAATTGTTCAATAACgg > 1:437152/1‑76 (MQ=255)
tAAACCGCTTCACCTTGAAAAAACTACATTTTTTTT‑CATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGa > 1:202087/1‑76 (MQ=255)
aaaCCGCTTCACCTTGAAAAAACTACATTTTTTTT‑CATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGAt < 1:962432/76‑1 (MQ=255)
aCCGCTTCACCTTGAAAAAACTACATTTTTTTT‑CATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTa > 1:224189/1‑76 (MQ=255)
tCACCTTGAAAAAACTACATTTTTTTT‑CATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCg > 2:819659/1‑76 (MQ=255)
tCACCTTGAAAAAACTACATTTTTTTT‑CATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCg < 2:648501/76‑1 (MQ=255)
cACCTTGAAAAAACTACATTTTTTTT‑CATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGc > 1:222402/1‑76 (MQ=255)
cTTGAAAAAACTACATTTTTTTT‑CATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGa < 2:1592617/76‑1 (MQ=255)
cTTGAAAAAACTACATTTTTTTT‑CATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGa > 1:412477/1‑76 (MQ=255)
ttGAAAAAACTACA‑TTTTTTT‑CATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACg > 1:989333/1‑76 (MQ=255)
tGAAAAAACTACATTTTTTTT‑CATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACg > 2:677301/1‑76 (MQ=255)
gAAAAAACTACATTTTTTTT‑CATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGa > 1:503424/1‑76 (MQ=255)
aaaaaaCTACATTTTTTTT‑CATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGaa > 2:581824/1‑76 (MQ=255)
aaaaCTACATTTTTTTT‑CATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGAAAg < 1:1338971/76‑1 (MQ=255)
aaaCTACATTTTTTTT‑CATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCAGCTGACGAAAgc > 2:1527821/1‑76 (MQ=255)
aaaCTACA‑TTTTTTTGCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGAAAgc < 2:194849/76‑1 (MQ=255)
aaCTACATTTTTTTT‑CATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGAAAgcg < 2:1307828/76‑1 (MQ=255)
aaCTACATTTTTTTT‑CATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGAAAgcg > 1:256874/1‑76 (MQ=255)
aaCTACATTTTTTTT‑CATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGAAAgcg > 1:256858/1‑76 (MQ=255)
aCTACATTTTTTTT‑CATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGAAAgcgc > 1:730441/1‑76 (MQ=255)
cTACATTTTTTTT‑CATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGAAAGCGcc > 1:1557090/1‑76 (MQ=255)
|
ATAGCATTATTCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑TTTTTTT‑CATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGAAAGCGCC > REL606/3875550‑3875695
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
