Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A108 F1 I1 R1
|
80 |
195.1 |
12639756 |
93.3% |
11792892 |
75.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
REL606 |
3,875,632 |
(T)7→8 |
intergenic (‑66/+287) |
glmU ← / ← atpC |
bifunctional N‑acetylglucosamine‑1‑phosphate uridyltransferase/glucosamine‑1‑phosphate acetyltransferase/F0F1 ATP synthase subunit epsilon |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | REL606 | 3,875,625 | 1 | . | T | 97.4%
| 614.1
/ 6.5
| 156 | intergenic (‑59/+294) | glmU/atpC | bifunctional N‑acetylglucosamine‑1‑phosphate uridyltransferase/glucosamine‑1‑phosphate acetyltransferase/F0F1 ATP synthase subunit epsilon |
| Reads supporting (aligned to +/- strand): ref base . (1/3); new base T (74/78); total (75/81) |
| Fisher's exact test for biased strand distribution p-value = 6.21e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.67e-01 |
Only 100 of 183 total aligned reads displayed.
ATAGCATTATTCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTAC‑A‑TTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGAAAGCGCC > REL606/3875550‑3875695
|
aTAGCATTATTCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTAC‑a < 2:4981166/76‑1 (MQ=255)
aTAGCATTATTCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTAC‑a > 1:2440533/1‑76 (MQ=255)
tAGCATTATTCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTAC‑A‑t < 2:3937444/76‑1 (MQ=255)
tAGCATTATTCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTAC‑A‑t < 1:3486081/76‑1 (MQ=255)
tAGCATTATTCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTAC‑A‑t > 1:2098836/1‑76 (MQ=255)
aGCATTATTCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTAC‑A‑tt > 1:4934642/1‑76 (MQ=255)
gCATTATTCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTAC‑A‑ttt < 1:2844884/76‑1 (MQ=255)
cATTATTCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTAC‑A‑tttt < 1:1802243/76‑1 (MQ=255)
attattCAACATACGCTTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTAC‑A‑ttttt < 1:2554067/76‑1 (MQ=255)
attattCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTAC‑A‑ttttt > 1:5794363/1‑76 (MQ=255)
ttattCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTAC‑A‑tttttt > 2:628092/1‑76 (MQ=255)
ttattCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTAC‑A‑tttttt > 2:1708246/1‑76 (MQ=255)
ttattCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTAC‑A‑tttttt > 2:2063237/1‑76 (MQ=255)
ttattCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTAC‑A‑tttttt > 2:4150957/1‑76 (MQ=255)
tattCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTAC‑A‑ttttttt > 1:1891240/1‑76 (MQ=255)
attCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTAC‑A‑tttttttt < 1:1980020/76‑2 (MQ=255)
attCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTAC‑A‑tttttttt > 2:4367300/1‑75 (MQ=255)
ttCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTAC‑A‑ttttttttc > 2:1599256/1‑74 (MQ=255)
cATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTAC‑ATTTTTTTTCATCGt > 1:4298136/1‑76 (MQ=255)
cATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTAC‑ATTTTTTTTCATCGt > 1:3653523/1‑76 (MQ=255)
cATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTAC‑ATTTTTTTTCATCGt < 1:2196748/76‑1 (MQ=255)
aTACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTAC‑ATTTTTTTTCATCGTg < 1:4211758/76‑1 (MQ=255)
aTACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTAC‑ATTTTTTTTCATCGTg < 1:1331156/76‑1 (MQ=255)
aCGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTAC‑ATTTTTTTTCATCGTGaa > 1:968120/1‑76 (MQ=255)
aCGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTAC‑ATTTTTTTTCATCGTGaa > 2:3586643/1‑76 (MQ=255)
cgcgTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTAC‑ATTTTTTTTCATCGTGaaa < 1:5224204/76‑1 (MQ=255)
gcgTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTAC‑ATTTTTTTTCATCGTGAAAt < 2:1313819/76‑1 (MQ=255)
cgTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTAC‑ATTTTTTTTCATCGTGAAATg > 2:3335271/1‑76 (MQ=255)
gTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTAC‑ATTTTTTTTCATCGTGAAATgg > 1:3848587/1‑76 (MQ=255)
tCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTAC‑ATTTTTTTTCATCGTGAAATGGa > 1:5416410/1‑76 (MQ=255)
tCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTAC‑ATTTTTTTTCATCGTGAAATGGa > 1:3289678/1‑76 (MQ=255)
ccTTACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTAC‑ATTTTTTTTCATCGTGAAATGGAc < 2:2148230/76‑1 (MQ=255)
ccTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTAC‑ATTTTTTTTCATCGTGAAATGGAc > 1:944079/1‑76 (MQ=255)
ccTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTAC‑ATTTTTTTTCATCGTGAAATGGAc < 1:104026/76‑1 (MQ=255)
cTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTAC‑ATTTTTTTTCATCGTGAAATGGACa < 1:78650/76‑1 (MQ=255)
cTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTAC‑ATTTTTTTTCATCGTGAAATGGACa < 1:2754790/76‑1 (MQ=255)
cTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTAC‑ATTTTTTTTCATCGTGAAATGGACa > 1:89777/1‑76 (MQ=255)
tGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTAC‑ATTTTTTTTCATCGTGAAATGGACag < 1:3712616/76‑1 (MQ=255)
tGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTAC‑ATTTTTTTTCATCGTGAAATGGACag > 1:2499982/1‑76 (MQ=255)
gACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTAC‑ATTTTTTTTCATCGTGAAATGGACaga > 2:2222010/1‑76 (MQ=255)
aCTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTAC‑ATTTTTTTTCATCGTGAAATGGACagag < 1:101555/76‑1 (MQ=255)
gTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTAC‑ATTTTTTTTCATCGTGAAATGGACAGAGGAt > 2:4303459/1‑76 (MQ=255)
gTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTAC‑ATTTTTTTTCATCGTGAAATGGACAGAGGAt > 1:960090/1‑76 (MQ=255)
gTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTAC‑ATTTTTTTTCATCGTGAAATGGACAGAGGAt > 2:1245045/1‑76 (MQ=255)
tAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTAC‑ATTTTTTTTCATCGTGAAATGGACAGAGGATa < 1:2355102/76‑1 (MQ=255)
aaTTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTAC‑ATTTTTTTTCATCGTGAAATGGACAGAGGATaa < 1:3108559/76‑1 (MQ=255)
tttGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTAC‑ATTTTTTTTCATCGTGAAATGGACAGAGGATAAAt < 1:2166771/76‑1 (MQ=255)
tttGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTAC‑ATTTTTTTTCATCGTGAAATGGACAGAGGATAAAt > 2:4673172/1‑76 (MQ=255)
tttGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTAC‑ATTTTTTTTCATCGTGAAATGGACAGAGGATAAAt > 1:2711295/1‑76 (MQ=255)
tttGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTAC‑ATTTTTTTTCATCGTGAAATGGACAGAGGATAAAt > 1:6223007/1‑76 (MQ=255)
ttGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTAC‑ATTTTTTTTCATCGTGAAATGGACAGAGGATAAAtt > 1:4676164/1‑76 (MQ=255)
tGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTAC‑ATTTTTTTTCATCGTGAAATGGACAGAGGATAAATTg > 1:2637390/1‑76 (MQ=255)
tGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTAC‑ATTTTTTTTCATCGTGAAATGGACAGAGGATAAATTg > 1:4116547/1‑76 (MQ=255)
tGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTAC‑ATTTTTTTTCATCGTGAAATGGACAGAGGATAAATTg > 1:5968225/1‑76 (MQ=255)
gagaACGAATTTAAACCGCTTCACCTTGAAAAAACTAC‑ATTTTTTTTCATCGTGAAATGGACAGAGGATAAATTGt > 1:165425/1‑76 (MQ=255)
gagaACGAATTTAAACCGCTTCACCTTGAAAAAACTAC‑ATTTTTTTTCATCGTGAAATGGACAGAGGATAAATTGt > 2:5484420/1‑76 (MQ=255)
agaACGAATTTAAACCGCTTCACCTTGAAAAAACTAC‑ATTTTTTTTCATCGTGAAATGGACAGAGGATAAATTGtt < 2:151464/76‑1 (MQ=255)
gaACGAATTTAAACCGCTTCACCTTGAAAAAACTAC‑ATTTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTc > 1:1092824/1‑76 (MQ=255)
aaCGAATTTAAACCGCTTCACCTTGAAAAAACTAC‑A‑TTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCaa < 1:5000023/76‑1 (MQ=255)
aCGAATTTAAACCGCTTCACCTTGAAAAAACTAC‑ATTTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCaa < 1:5141702/76‑1 (MQ=255)
cGAATTTAAACCGCTTCACCTTGAAAAAACTAC‑ATTTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAAt < 1:5316744/76‑1 (MQ=255)
gAATTTAAACCGCTTCACCTTGAAAAAACTAC‑ATTTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATa > 1:3453307/1‑76 (MQ=255)
aaTTTAAACCGCTTCACCTTGAAAAAACTAC‑ATTTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATaa < 1:4042172/76‑1 (MQ=255)
aaTTTAAACCGCTTCACCTTGAAAAAACTAC‑ATTTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATaa > 2:5635534/1‑76 (MQ=255)
aaTTTAAACCGCTTCACCTTGAAAAAACTAC‑ATTTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATaa < 1:4498744/76‑1 (MQ=255)
aTTTAAACCGCTTCACCTTGAAAAAACTAC‑ATTTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAAc < 2:4628234/76‑1 (MQ=255)
tttAAACCGCTTCACCTTGAAAAAACTAC‑ATTTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACg < 2:4106325/76‑1 (MQ=255)
tttAAACCGCTTCACCTTGAAAAAACTAC‑ATTTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACg < 1:4673172/76‑1 (MQ=255)
ttAAACCGCTTCACCTTGAAAAAACTAC‑ATTTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACgg > 2:2119779/1‑76 (MQ=255)
tAAACCGCTTCACCTTGAAAAAACTAC‑ATTTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGa < 2:2506769/76‑1 (MQ=255)
aaaCCGCTTCACCTTGAAAAAACTAC‑ATTTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGAt > 1:3494321/1‑76 (MQ=255)
aCCGCTTCACCTTGAAAAAACTAC‑ATTTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTa > 2:5102641/1‑76 (MQ=255)
ccGCTTCACCTTGAAAAAACTAC‑ATTTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTAt < 1:6204496/76‑1 (MQ=255)
ccGCTTCACCTTGAAAAAACTAC‑ATTTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTAt < 1:2917942/76‑1 (MQ=255)
cGCTTCCCCTTAAAAAACCTACTT‑TTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATc < 1:1185510/76‑1 (MQ=255)
gCTTCACCTTGAAAAAACTAC‑ATTTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATcc > 2:2947976/1‑76 (MQ=255)
cTTCACCTTGAAAAAACTAC‑A‑TTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATcccc > 1:65853/1‑76 (MQ=255)
ttCACCTTGAAAAAACTAC‑ATTTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATcccc < 2:879283/76‑1 (MQ=255)
ttCACCTTGAAAAAACTAC‑ATTTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATcccc < 1:2057101/76‑1 (MQ=255)
tCACCTTGAAAAAACTAC‑ATTTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCg < 2:3279537/76‑1 (MQ=255)
tCACCTTGAAAAAACTAC‑ATTTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCg > 2:4694871/1‑76 (MQ=255)
tCACCTTGAAAAAACTAC‑ATTTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCg < 2:2703389/76‑1 (MQ=255)
aCCTTGAAAAAACTAC‑ATTTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCt > 1:3884837/1‑76 (MQ=255)
aCCTTGAAAAAACTAC‑ATTTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCt < 2:1622195/76‑1 (MQ=255)
ccTTGAAAAAACTAC‑ATTTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTg < 1:1523198/76‑1 (MQ=255)
ccTTGAAAAAACTAC‑ATTTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTg > 1:5480136/1‑76 (MQ=255)
ccTTGAAAAAACTAC‑ATTTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTg < 2:5747518/76‑1 (MQ=255)
ccTTGAAAAAACTAC‑ATTTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTg < 1:4338747/76‑1 (MQ=255)
cTTGAAAAAACTAC‑ATTTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGa > 1:1929611/1‑76 (MQ=255)
cTTGAAAAAACTAC‑ATTTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGa > 2:320363/1‑76 (MQ=255)
ttGAAAAAACTAC‑ATTTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGAc > 2:4278848/1‑76 (MQ=255)
tGAAAAAACTAC‑ATTTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACg > 1:2064386/1‑76 (MQ=255)
tGAAAAAACTAC‑ATTTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACg > 1:5291202/1‑76 (MQ=255)
gAAAAAACTAC‑ATTTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGa < 2:835984/76‑1 (MQ=255)
aaaaaaCTAC‑ATTTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGaa < 2:1135328/76‑1 (MQ=255)
aaaaaaCTAC‑ATTTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGaa > 1:980125/1‑76 (MQ=255)
aaaaCTAC‑ATTTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGAAAg < 1:1686544/76‑1 (MQ=255)
aaCTAC‑ATTTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGAAAgcg > 2:5374413/1‑76 (MQ=255)
aCTAC‑ATTTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGAAAgcgc > 2:6100436/1‑76 (MQ=255)
cTAC‑ATTTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGAAAGCGcc > 1:1773602/1‑76 (MQ=255)
|
ATAGCATTATTCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTAC‑A‑TTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGAAAGCGCC > REL606/3875550‑3875695
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
