Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A11 F1 I1 R1
|
21 |
62.2 |
4089897 |
94.3% |
3856772 |
75.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
REL606 |
3,875,632 |
(T)7→8 |
intergenic (‑66/+287) |
glmU ← / ← atpC |
bifunctional N‑acetylglucosamine‑1‑phosphate uridyltransferase/glucosamine‑1‑phosphate acetyltransferase/F0F1 ATP synthase subunit epsilon |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | REL606 | 3,875,625 | 1 | . | T | 94.1%
| 182.2
/ 4.1
| 51 | intergenic (‑59/+294) | glmU/atpC | bifunctional N‑acetylglucosamine‑1‑phosphate uridyltransferase/glucosamine‑1‑phosphate acetyltransferase/F0F1 ATP synthase subunit epsilon |
| Reads supporting (aligned to +/- strand): ref base . (3/0); new base T (21/27); total (24/27) |
| Fisher's exact test for biased strand distribution p-value = 9.72e-02 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.90e-01 |
ATAGCATTATTCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑T‑T‑TTT‑TT‑CATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGAAAGCGCCA > REL606/3875550‑3875696
|
aTAGCATTATTCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACa > 1:1608652/1‑76 (MQ=255)
aTAGCATTATTCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACa < 1:1854733/76‑1 (MQ=255)
aGCATTATTCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑t‑t < 1:1488086/76‑1 (MQ=255)
aGCATTATTCAACANACGCGTCCTTACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑t‑t > 1:11526/1‑76 (MQ=255)
gCATTATTCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑t‑t‑t > 1:1149784/1‑76 (MQ=255)
cATTATTCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑t‑t‑tt < 2:866785/76‑1 (MQ=255)
attattCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑t‑t‑ttt < 1:1818754/76‑1 (MQ=255)
ttattCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑t‑t‑ttt‑t < 1:738137/76‑1 (MQ=255)
aCATAAGCGTCCTGACTGTAATTTGAAAACGAATTTAAACCGCTTCCCCTTGAAAAAACTACATT‑T‑TTT‑TT‑CATCg < 1:131522/76‑1 (MQ=255)
aTACGCTTCCTGTCTTTAATTTGAGACCGAACCCAAACCGCTTCACCTTTTACCCACTCCATT‑T‑TTT‑TT‑CATCGtc < 2:1394768/76‑2 (MQ=255)
aTACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATT‑T‑TTT‑TT‑CATCGTg < 1:871192/76‑1 (MQ=255)
tACGCGTCCTGACTGTAATTTGAGAACNAATTTAANNCGCTTGACCTTGAACACACTCCA‑T‑T‑TTTCTT‑AATCGTGa > 1:2005225/1‑76 (MQ=255)
tACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATT‑T‑TTT‑TT‑CATCGTGa < 1:1391436/76‑1 (MQ=255)
cgcgTCCTGGCTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATT‑T‑TTT‑TT‑CATCGTGaaa > 1:153531/1‑76 (MQ=255)
cgcgTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATT‑T‑TTT‑TT‑CATCGTGaaa < 1:505080/76‑1 (MQ=255)
gTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATT‑T‑TTT‑TT‑CATCGTGAAATgg < 2:1801739/76‑1 (MQ=255)
gTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATT‑T‑TTT‑TT‑CATCGTGAAATgg < 2:1513553/76‑1 (MQ=255)
ccTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATT‑T‑TTT‑TT‑CATCGTGAAATGGAc < 1:1038043/76‑1 (MQ=255)
ccTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATT‑T‑TTT‑TT‑CATCGTGAAATGGAc > 1:1846195/1‑76 (MQ=255)
ccTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATT‑T‑TTT‑TT‑CATCGTGAAATGGAc < 1:548071/76‑1 (MQ=255)
ccTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑T‑T‑TTT‑TT‑CATCGTGAAATGGACa > 2:1325431/1‑76 (MQ=255)
cTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATT‑T‑TTT‑TT‑CATCGTGAAATGGACa > 1:1406034/1‑76 (MQ=255)
cTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATT‑T‑TTT‑TT‑CATCGTGAAATGGACa < 1:718824/76‑1 (MQ=255)
tGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATT‑T‑TTT‑TT‑CATCGTGAAATGGACag < 2:1831079/76‑1 (MQ=255)
tGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATT‑T‑TTT‑TT‑CATCGTGAAATGGACag < 1:961292/76‑1 (MQ=255)
tGACTGGATTTTGAGAACTAATTAAACCCGCTTCACCTTGAAAAACCTACATT‑T‑TTT‑TT‑CATCGGGAAATGGACag < 2:749862/76‑1 (MQ=255)
gACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATT‑T‑TTT‑TT‑CATCGTGAAATGGACaga > 2:1191510/1‑76 (MQ=255)
cTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATT‑T‑TTT‑TT‑CATCGTGAAATGGACAGAgg < 1:1728299/76‑1 (MQ=255)
gTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATT‑T‑TTT‑TT‑CATCGTGAAATGGACAGAGGAt < 1:693492/76‑1 (MQ=255)
aaTTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATT‑T‑TTT‑TT‑CATCATGAAATGGACAGAGGATaa < 2:828117/76‑1 (MQ=255)
ttGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATT‑T‑TTT‑TT‑CATCGTGAAATGGACAGAGGATAAAtt > 1:998800/1‑76 (MQ=255)
ttGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATT‑T‑TTT‑TT‑CATCGTGAAATGGACAGAGGATAAAtt > 1:1400266/1‑76 (MQ=255)
tGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATT‑T‑TTT‑TT‑CATCGTGAAATGGACAGAGGATAAATTg > 2:1944062/1‑76 (MQ=255)
tGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATT‑T‑TTT‑TT‑CATCGTGAAATGGACAGAGGATAAATTg < 1:566796/76‑1 (MQ=255)
gaACGAATTTAAACCGCTTCACCTTGAAAAAACTACATT‑T‑TTT‑TT‑CATCGTGAAATGGACAGAGGATAAATTGTTc < 1:1548505/76‑1 (MQ=255)
gaACGAATTTAAACCGCTTCACCTTGAAAAAACTACATT‑T‑TTT‑TT‑CATCGTGAAATGGACAGAGGATAAATTGTTc < 1:1548513/76‑1 (MQ=255)
aCGAATTTAAACCGCTTCACCTTGAAAAAACTACATT‑T‑TTT‑TT‑CATCGTGAAATGGACAGAGGATAAATTGTTCaa < 1:1010579/76‑1 (MQ=255)
cGAATTTAAACCGCTTCACCTTGAAAAAACTACATT‑T‑TTT‑TT‑CATCGTGAAATGGACAGAGGATAAATTGTTCAAt < 1:647828/76‑1 (MQ=255)
aaTTTAAACCGCTTCACCTTGAAACAACNACA‑T‑T‑TTT‑TTGCATCGTGACANGGACAGAGGATAAATTGTTCAATaa > 1:292642/1‑76 (MQ=255)
tttAAACCGCTTCACCTTGAAAAACCTNCA‑T‑T‑TTTNNT‑CATCCTGAAATGGACAGAGCATAAATTGTTCAATAACg > 1:2008070/1‑76 (MQ=255)
ttAAACCGCTTCACCTTGAAAAAACTACATT‑T‑TTT‑TT‑CATCGTGAAATGGACAGAGGATAAATTGTTCAATAACgg < 1:1635011/76‑1 (MQ=255)
tAAACCGCTTCACCTTGAAAAAACTACATT‑T‑TTT‑TT‑CATCGTGAAAT‑GACAGAGGATAAATTGTTCAATAACGGAt > 1:486571/1‑76 (MQ=255)
aaaCCGCTTCACCTTGAAAAAACTACATT‑T‑TTT‑TT‑CATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGAt > 2:1785935/1‑76 (MQ=255)
aaaCCGCTTCACCTTGAAAAAACTACATT‑T‑TTT‑TT‑CATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGAt > 2:145035/1‑76 (MQ=255)
aCCGCTTCACCTTGAAAAAACTACATT‑T‑TTT‑TT‑CATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTa > 2:1773448/1‑76 (MQ=255)
aCCGCTTCACCTTGAAAAAACTACATT‑T‑TTT‑TT‑CATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTa < 2:1563240/76‑1 (MQ=255)
ccGCTTCACCTTGAAAAAACTACATT‑T‑TTT‑TT‑CATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTAt > 2:589623/1‑76 (MQ=255)
ttCACCTTGAAAAAACTAGA‑TGT‑TCT‑GT‑CATCGTGTAATGGGCAGAGGATAAATAGTTCAGTGACGGATTCTcccc > 1:2041323/1‑76 (MQ=255)
ttCACCTTGAAAAAACTACATT‑T‑TTT‑TT‑CATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATcccc < 1:510243/76‑1 (MQ=255)
ttCACCTTGAAAAAACTACATT‑T‑TTT‑TT‑CATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATcccc > 1:1297832/1‑76 (MQ=255)
tCACCTTGAAAAAACTACATT‑T‑TTT‑TT‑CATCGTGAAATGGACAGAGGATAAATTATTCAATAACGGATTATCCCCg > 2:189406/1‑76 (MQ=255)
aCCTTGAAAAAACTACATT‑T‑TTT‑TT‑CATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCt < 2:593241/76‑1 (MQ=255)
cTTGAAAAAACTACATT‑T‑TTT‑TT‑CATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGa < 1:1470636/76‑1 (MQ=255)
ttGAAAAAACTACATT‑T‑TTT‑TT‑CATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGAc > 2:965736/1‑76 (MQ=255)
ttGAAAAAACTACATT‑T‑TTT‑TT‑CATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGAc > 1:1929827/1‑76 (MQ=255)
tGAAAAAACTACATT‑T‑TTT‑TT‑CATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACg > 1:807002/1‑76 (MQ=255)
gAAAAAACTACATT‑T‑TTT‑TT‑CATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACgn < 1:575597/76‑2 (MQ=255)
gAAAAAACTACATT‑T‑TTT‑TT‑CATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGa > 1:1240206/1‑76 (MQ=255)
aaaaaCTACATT‑T‑TTT‑TT‑CATCGTGAAATGGACAGAGGCTAAATTGTTCAATAACGGATTATCCCCGCTGACGaaa < 1:1699573/76‑1 (MQ=255)
aaaaaCTACATT‑T‑TTT‑TT‑CATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGaaa > 1:928946/1‑76 (MQ=255)
aaaaCTACATT‑T‑TTT‑TT‑CATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTCTCCCCGCTGACGAAAg > 2:115815/1‑76 (MQ=255)
aaaaCTACATT‑T‑TTT‑TT‑CATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGAAAg > 1:514370/1‑76 (MQ=255)
aaaCTACATT‑T‑TTT‑TT‑CATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGAAAgc < 1:990185/76‑1 (MQ=255)
cTACATT‑T‑TTT‑TT‑CATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGAAAGCGcc < 1:763360/76‑1 (MQ=255)
tACA‑T‑TGTTT‑TT‑CATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGTCGAAAGCGCCa < 1:63841/76‑1 (MQ=255)
|
ATAGCATTATTCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑T‑T‑TTT‑TT‑CATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGAAAGCGCCA > REL606/3875550‑3875696
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
