mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP000730 | 512,643 | 0 | A | G | 51.0% | 0.1 / 221.0 | 147 | intergenic (+711/‑150) | recR/rrs1 | recombination protein RecR/16S ribosomal RNA |
| * | CP000730 | 111,512 | 0 | A | G | 36.8% | 94.6 / 79.9 | 87 | S194S (TCA→TCG) | USA300HOU_0110 | possible staphylococcal tandem lipoprotein |
| * | CP000730 | 111,516 | 0 | C | A | 36.0% | 127.4 / 76.7 | 87 | Q196K (CAA→AAA) | USA300HOU_0110 | possible staphylococcal tandem lipoprotein |
| Marginal new junction evidence (lowest skew 10 of 11 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP000730 | 382471 = | 64 (1.010) | 4 (0.070) | 4/256 | 9.4 | 6.1% | intergenic (+4/+89) | USA300HOU_0349/ulaA | possible dehydrogenase/PTS family porter component IIC |
| ? | CP000730 | 382543 = | 65 (1.110) | intergenic (+76/+17) | USA300HOU_0349/ulaA | possible dehydrogenase/PTS family porter component IIC | |||||
| * | ? | CP000730 | 1628158 = | 73 (1.150) | 3 (0.050) | 3/254 | 10.1 | 4.2% | coding (315/1407 nt) | pgd | phosphogluconate dehydrogenase (decarboxylating) |
| ? | CP000730 | 1628226 = | 70 (1.200) | coding (247/1407 nt) | pgd | phosphogluconate dehydrogenase (decarboxylating) | |||||
| * | ? | CP000730 | = 802141 | 67 (1.050) | 3 (0.050) | 3/256 | 10.1 | 4.8% | intergenic (+382/+242) | USA300HOU_0748/dgkA1 | hypothetical protein/possible diacylglycerol kinase |
| ? | CP000730 | = 802168 | 57 (0.970) | intergenic (+409/+215) | USA300HOU_0748/dgkA1 | hypothetical protein/possible diacylglycerol kinase | |||||
| * | ? | CP000730 | 408323 = | 77 (1.210) | 3 (0.050) | 3/260 | 10.2 | 3.8% | coding (1869/2229 nt) | metE | 5‑methyltetrahydropteroyltriglutamate‑‑ homocysteine S‑methyltransferase |
| ? | CP000730 | 408388 = | 78 (1.310) | coding (1804/2229 nt) | metE | 5‑methyltetrahydropteroyltriglutamate‑‑ homocysteine S‑methyltransferase | |||||
| * | ? | CP000730 | 48947 = | 70 (1.100) | 3 (0.050) | 3/258 | 10.2 | 4.5% | intergenic (‑56/+178) | ccrA/cch | cassette chromosome recombinase A/hypothetical protein |
| ? | CP000730 | 48972 = | 61 (1.030) | intergenic (‑81/+153) | ccrA/cch | cassette chromosome recombinase A/hypothetical protein | |||||
| * | ? | CP000730 | = 2760876 | 54 (0.850) | 3 (0.050) | 3/262 | 10.3 | 5.5% | coding (123/1371 nt) | citM | CitMHS family citrate‑magnesium (Mg2+):proton (H+) citrate‑calcium (Ca2+):proton (H+) symporter |
| ? | CP000730 | = 2760923 | 52 (0.870) | coding (76/1371 nt) | citM | CitMHS family citrate‑magnesium (Mg2+):proton (H+) citrate‑calcium (Ca2+):proton (H+) symporter | |||||
| * | ? | CP000730 | 2406948 = | 62 (0.970) | 3 (0.050) | 3/264 | 10.3 | 4.8% | coding (613/1716 nt) | ureC | urease alpha subunit |
| ? | CP000730 | 2406995 = | 61 (1.010) | coding (660/1716 nt) | ureC | urease alpha subunit | |||||
| * | ? | CP000730 | = 842190 | 64 (1.010) | 3 (0.050) | 3/264 | 10.3 | 5.0% | coding (2423/2847 nt) | uvrA | excision endonuclease subunit UvrA |
| ? | CP000730 | = 842276 | 54 (0.890) | coding (2509/2847 nt) | uvrA | excision endonuclease subunit UvrA | |||||
| * | ? | CP000730 | = 490618 | 70 (1.100) | 3 (0.050) | 3/262 | 10.3 | 4.3% | coding (219/843 nt) | metQ | ABC superfamily ATP binding cassette transporter, binding protein |
| ? | CP000730 | = 490649 | 66 (1.100) | coding (250/843 nt) | metQ | ABC superfamily ATP binding cassette transporter, binding protein | |||||
| * | ? | CP000730 | = 2681054 | 68 (1.070) | 3 (0.050) | 3/268 | 10.4 | 4.2% | intergenic (‑89/+490) | USA300HOU_2538/mvaA | hypothetical protein/hydroxymethylglutaryl‑CoA reductase |
| ? | CP000730 | = 2681066 | 70 (1.140) | intergenic (‑101/+478) | USA300HOU_2538/mvaA | hypothetical protein/hydroxymethylglutaryl‑CoA reductase | |||||