Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A3 F228 I0 R1
|
182 |
117.2 |
5818924 |
93.6% |
5446512 |
99.8 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NC_000913 |
4,494,883:1 |
(A)7→8 |
100% |
coding (261/564 nt) |
idnK → |
D‑gluconate kinase, thermosensitive |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,494,876 | 1 | . | A | 90.5%
| 333.3
/ 27.8
| 105 | coding (254/564 nt) | idnK | D‑gluconate kinase, thermosensitive |
| Reads supporting (aligned to +/- strand): ref base . (4/6); new base A (51/44); total (55/50) |
| Fisher's exact test for biased strand distribution p-value = 5.13e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.51e-01 |
Only 100 of 119 total aligned reads displayed.
TATCTGATGAAGATCGACTTCCCTGGCTGGAACGCTTAAATGATGCTTCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCATT‑‑AAAAAAA‑‑CAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTCCTCTGGTTAGATGGCGACTATGAAACTATTCTCGCGCGAATGC > NC_000913/4494777‑4494971
|
tATCTGATGAAGATCGACTTCCCTGGCTGGAACGCTTAAATGATGCTTCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCAtt > 2:1653847/1‑100 (MQ=255)
gatgaAGATCGACTTCCCTGGCTGGAACGCTTAAATGATGCTTCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCATT‑‑aaaaa < 1:2087823/100‑1 (MQ=255)
aaGATCGACTTCCCTGGCTGGAACGCTTAAATGATGCTTCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCATT‑‑aaaaaaagc < 2:1963031/100‑3 (MQ=255)
aaGATCGACTTCCCTGGCTGGAACGCTTAAATGATGCTTCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCATT‑‑aaaaaaaac < 2:14039/100‑3 (MQ=255)
aaGATCGACTTCCCTGGCTGGAACGCTTAAATGATGCTTCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCATT‑‑aaaaaaaac < 1:2273342/100‑3 (MQ=255)
aaGATCGAATTCCCTGGCTGGAACGCTTAAATTATGCTTCATACAGTCTTTATAAAAAAAATGAAACATGATTTATTGTCTGTTCATCATT‑‑aaaaaaaac < 1:1805666/100‑3 (MQ=255)
aGATCGGCTTCCCTTGCTGTAACGCTTAAAGGATGCTTCATGCAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCATT‑‑aaaaaaaac < 1:1986700/99‑3 (MQ=255)
aGATCGACTTCCCTGGCTGGAACGCTTAAATGATGCTTCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCATT‑‑aaaaaaaaca > 1:1182331/1‑97 (MQ=255)
gATCGACTTCCCTGGCTGGAACGCTTAAATGATGCTTCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCATT‑‑aaaaaaaacag > 2:36534/1‑96 (MQ=255)
gATCGACTTCCCTGGCTGGAACGCTTAAATGATGCTTCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCATT‑‑aaaaaaaacag > 2:2874584/1‑96 (MQ=255)
gATCGACTTCCCTGGCTGGAACGCTTAAATGATGCTTCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCATT‑‑aaaaaaaacag > 1:1336020/1‑96 (MQ=255)
gACTTCCCTGGCTGGAACGCTTAAATGATGCTTCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCATTA‑AAAAAAA‑‑CAGTATc > 2:2831680/1‑100 (MQ=255)
cTTCCCTGGCTGGAACGCTTAAATGATGCTTCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCATTA‑AAAAAAA‑‑CAGTATCGt < 2:483871/100‑1 (MQ=255)
ttCCCTGGCTGGAACTCGTAAATGATGCTTCATACATTCTTTATAAAAAGAATGAAACAGTATTTTTTTTCTGTTCATCTTTA‑AAAAAAA‑‑CAGTAt < 1:2014280/96‑1 (MQ=255)
tCCCTGGCTGGAACGCTTAAATGATGCTTCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCATTA‑AAAAAAA‑‑CAGTATCGTGa > 1:581015/1‑100 (MQ=255)
ctggAACGCTTAAATGATGCTTCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCATTA‑AAAAAAA‑‑CAGTATCGTGATATTTTa > 1:2315079/1‑100 (MQ=255)
ctggAACGCTTAAATGATGCTTCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCATTA‑AAAAAAA‑‑CAGTATCGTGATATTTTa > 1:1056876/1‑100 (MQ=255)
ctggAACGCTTAAATGATGCTTCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCATT‑‑AAAAAAA‑‑CAGTATCGTGATATTTTAc < 2:1088046/100‑1 (MQ=255)
ggAACGCTTAAATGATGCTTCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCATTA‑AAAAAAA‑‑CAGTATCGTGATATTTTACg < 2:1381557/100‑1 (MQ=255)
ggAAAGCTTAAATGATGCTTTATACAGTCTTTATAAAAAGAATAAAAAAGGATTTATTGTCTGTTCATCATTA‑AAAAAAA‑‑CAGTATCGTGATAttt < 1:2120824/96‑1 (MQ=255)
gAACGCTTAAATGATGCTTCATACAGACTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCATTA‑AAAAAAA‑‑CAGTATCGTGATATTTTACGc > 2:1770012/1‑100 (MQ=255)
aaCTCTTAAATTATGCTTTATATAGTCTTTATAAAAAAAATCAAACATGATTTATTGTCTGTTCATCATTA‑AAAAAAA‑‑CAGTATCGTGa < 1:2901553/89‑1 (MQ=255)
aaCGCTTAAATGATGCTTCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCATTA‑AAAAAAA‑‑CAGTATCGTGATATTTTACGCa < 2:887618/100‑1 (MQ=255)
aaCGCTTAAATGATGCTTCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCATTA‑AAAAAAA‑‑CAGTATCGTGATATTTTACGCa < 2:932070/100‑1 (MQ=255)
cGCTTAAATGATGCTTCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCATTA‑AAAAAAA‑‑CAGTATCGTGATATTTTACGCAAg < 2:2541675/100‑1 (MQ=255)
cGCTTAAATGATGCTTCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCATTA‑AAAAAAA‑‑CAGTATCGTGATATTTTACGCAAg < 1:67417/100‑1 (MQ=255)
gCTTAAATGATGCTTCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCATT‑‑AAAAAAA‑‑CAGTATCGTGATATTTTACGCAAggg > 2:2010434/1‑100 (MQ=255)
cTTAAATGATGCTTCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCATTAAAAAAAAA‑‑CAGTATCGTGATATTTTACGCGAgg > 2:700773/1‑100 (MQ=255)
cTTAAATGATGCTTCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCATTA‑AAAAAAA‑‑CAGTATCGTGATATTTTACGCAAggg < 2:1555409/100‑1 (MQ=255)
cTTAAATGATGCTTCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCATTA‑AAAAAAA‑‑CAGTATCGTGATATTTTACGCAAg > 1:1313768/1‑98 (MQ=255)
cTTAAATGATGCTTCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCATT‑‑‑‑‑‑AAA‑‑CAGTATCGTGATATTTTACGCAAGGGTAGc > 1:1906470/1‑99 (MQ=255)
ttAAATGATGCTTCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCATTA‑AAAAAAA‑‑CAGTATCGTGATATTTTACGCAAGGGt > 1:314889/1‑100 (MQ=255)
tAAATGATGCTTCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTTATAATTA‑AAAAAAA‑‑CAGTATCGTGATATTTTACGCAAGGGTa > 1:705930/1‑100 (MQ=255)
tAAATGATGCTTCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCATTA‑AAAAAAA‑‑CAGTATCGTGATATTTTACGCAAGGGTa > 1:1231546/1‑100 (MQ=255)
tAAATGATGCTTCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCATTA‑AAAAAAA‑‑CAGTATCGTGATATTTTACGCAAGGGTa > 1:2547764/1‑100 (MQ=255)
aaaTGATGCTTCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCATTA‑AAAAAAA‑‑CAGTATCGTGATATTTTACGCAATGGTa > 1:485756/1‑99 (MQ=255)
tgatgCTTCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCATTA‑AAAAAAA‑‑CAGTATCGTGATATTTTACGCAAGGGTAGccc > 1:1475649/1‑100 (MQ=255)
tgatgCTTCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCATTA‑AAAAAAA‑‑CAGTATCGTGATATTTTACGCAAGGGTAGccc < 2:1313770/100‑1 (MQ=255)
gatgCTTCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCATTA‑AAAAAAA‑‑CAGTATCGTGATATTTTACGCAAGGGTAGcccc < 2:2759132/100‑1 (MQ=255)
cTTCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCCTCATTA‑AAAAAAA‑‑CAGTATCGTGATATTTTACACAAGGATAGCCCCCATg > 2:2250987/1‑100 (MQ=255)
cTTCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCATTA‑AAAAAAA‑‑CAGTATCGTGATATTTTACGCAAGGGTAGCCCCCAt > 1:2718864/1‑99 (MQ=255)
ncATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCATTA‑AAAAAAA‑‑CAGTATCGTGATATTTTACGCAAGGGCAGCCACCATGtt > 1:334775/2‑100 (MQ=255)
cATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCATTA‑AAAAAAA‑‑CAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTc > 1:1455128/1‑100 (MQ=255)
cATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCATTA‑AAAAAAA‑‑CAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTc < 2:252796/100‑1 (MQ=255)
cATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCATTA‑AAAAAAA‑‑CAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTc < 1:236825/100‑1 (MQ=255)
aTACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCATTA‑AAAAAAA‑‑CAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCa > 2:2070769/1‑100 (MQ=255)
tACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCATTA‑AAAAAAA‑‑CAGTATTGTGATATTTTACGCAAAGGGAGCACCCATGTTCa > 1:865952/1‑99 (MQ=255)
tACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCATTA‑AAAAAAA‑‑CAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCAt > 2:1060804/1‑100 (MQ=255)
tACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCATTA‑AAAAAAA‑‑CAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCAt < 2:2243960/100‑1 (MQ=255)
aCAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCATTA‑AAAAAAA‑‑CAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCAtt < 1:1175215/100‑1 (MQ=255)
aGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCATTA‑AAAAAAA‑‑CAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCAttt > 1:2416709/1‑99 (MQ=255)
cTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCATT‑‑AAAAAAA‑‑CAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTCctct < 2:337738/100‑1 (MQ=255)
tttATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCATTA‑AAAAAAA‑‑CAGAATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTCctct > 1:287421/1‑100 (MQ=255)
ttATAAAAAGTATGAAACAGGATTTATTGTCTGTTCATCATTA‑AAAAAAA‑‑CAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTCCTCTg > 1:870155/1‑100 (MQ=255)
ttATAAAAAGAATGAAACAGGGTTTGTAGTCTGTTTATCATTA‑AAAAAAA‑‑CAGTATAGTGATCTTTTACTCAAGTGTAGACCCCATGTTCATTTCCTCTg > 1:2705429/1‑100 (MQ=255)
ttATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCATTA‑AAAAAAA‑‑CAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTCCTCTg < 2:225880/100‑1 (MQ=255)
ataAAAAGAATGAAACAGGATTTATTGTCTGTTCATCATTA‑AAAAAAA‑‑CAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTCCTCTGGt < 2:2224253/100‑1 (MQ=255)
ataAAAAGAATGAAACAGGATTTATTGTCTGTTCATCATTA‑AAAAAAA‑‑CAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTCCTCTGGt < 2:2860128/100‑1 (MQ=255)
ataAAAAGAATGAAACAGGATTTATTGTCTGTTCATCATTA‑AAAAAAA‑‑CAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTCCTCTGGt < 2:131508/100‑1 (MQ=255)
taAAAAGAATGAAACAGGATTTATTGTCTGTTCATCATTA‑AAAAAAA‑‑CAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTCCTCTGGtt > 1:601824/1‑100 (MQ=255)
taAAAAGAATGAAACAGGATTTATTGTCTGTTCATCATTA‑AAAAAAA‑‑CAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTCCTCTGGtt < 2:2547775/100‑1 (MQ=255)
aaaaaGAATGAAACAGGATTTATTGTCTGTTCATCATTA‑AAAAAAA‑‑CAGTATCGTGATATTTTACGCAATGGTAGACCCCATGTTCATTTCCTCTGGtt > 1:102277/1‑99 (MQ=255)
aaaaaGAATGAAACAGGATTTATTGTCTGTTCATCATTA‑AAAAAAA‑‑CAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTCCTCTGGTTa > 2:144502/1‑100 (MQ=255)
aaaaaGAATGAAACAGGATTTATTGTCTGTTCATCATTA‑AAAAAAA‑‑CAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTCCTCTGGTTa < 1:615339/100‑1 (MQ=255)
gaaaGAATGAAACAGGATTTATTGTCTGTTCATCATT‑‑AAAAAAA‑‑CAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTCCTCTGGTTAGa > 1:84754/2‑100 (MQ=255)
aaaTAATGAAACATGATTTTTTGTGTGTTGATAATTA‑AAAAAAA‑‑CAGTATCGTGATATTTTACGCAAGTGTAGCCCCCATGTTCATTTCCTCTg < 1:1731162/94‑1 (MQ=255)
aGAATGAAACAGGATTTATTGTCTGTTCATCATTA‑AAAAAAA‑‑CAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTCCTCTGGTTAGATg < 1:1390828/100‑1 (MQ=255)
gAATGAAACAGGATTTATTGTCTGTTCATCATTA‑AAAAAAA‑‑CAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTCCTCTGGTTAGATgg > 2:2417089/1‑100 (MQ=255)
gAATGAAACAGGATTTATTGTCTGTTCATCATTA‑AAAAAAA‑‑CAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTCCTCTGGTTAGATgg > 2:1056585/1‑100 (MQ=255)
gAATGAAACAGGATTTATTGTCTGCTCATCATTA‑AAAAAAA‑‑CAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTCCTCTGGTTAGATgg > 1:1799652/1‑100 (MQ=255)
aaTGAAACAGGATTTATTGTCTGTTCATCATTA‑AAAAAAA‑‑CAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTCCTCTGGTTAGATGGc < 2:350924/100‑1 (MQ=255)
aTGAAACATGATTTATTGTCTGTTCATCATTA‑AAAAAAA‑‑CAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTCCTCTGGTTAGATGGCg < 1:541015/100‑1 (MQ=255)
gAAACAGGATTTATTGTCTGTTCATCATTA‑AAAAAAA‑‑CAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTCCTCTGGTTAGATGGCGAc < 2:1663202/100‑1 (MQ=255)
gAAACAGGATTTATTGTCTGTTCATCATTA‑AAAAAAA‑‑CAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTCCTCTGGTTAGATGGCGAc < 2:563328/100‑1 (MQ=255)
aaaCAGGATTTATTGTCTGTTCATCATTA‑AAAAAAA‑‑CAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTCCTCTGGTTAGATGGCGACt > 2:922176/1‑100 (MQ=255)
aaaCAGGATTTATTGTCTGTTCATCATTA‑AAAAAAA‑‑CAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTCCTCTGGTTAGATGGCGACt > 2:892322/1‑100 (MQ=255)
aaaCAGGATTTATTGTCTGTTCATCATTA‑AAAAAAA‑‑CAGTATCGTGATATTTTACGCAAGGGTAACCCCCATGTTCATTTCCTCTGGTTAGATGGCGACt > 1:64618/1‑100 (MQ=255)
aaaCAGGATTTATTGTCTGTTCATCATTA‑AAAAAAA‑‑CAGTAGCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTCCTCTGGTTAGATGGCGACt > 2:2444194/1‑100 (MQ=255)
aaCAGGATTTATTGTCTGTTCATCATTA‑AAAAAAA‑‑CAGTATCGTGATTTTTTCCGCAAGGGTGTCCTCCATGTTCATTTCCTCTGCTTAGCTGGCGAc > 1:2579418/1‑98 (MQ=255)
cAGGATTTATTGTCTGTTCATCATTA‑AAAAAAA‑‑CAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTCCTCTGGTTAGATGGCGACTATg < 2:192515/100‑1 (MQ=255)
aGGATTTATTGTCTGTTCATCATTA‑AAAAAAA‑‑CAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTCCTCTGGTTAGATGGCGACTATGa > 1:1328452/1‑100 (MQ=255)
ggATTTATTGTCTGTTCATCATTA‑AAAAAAA‑‑CAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTCCTCTGGTTAGATGGCGACTATGaa > 1:2547749/1‑100 (MQ=255)
gATTTATTGTCTGTTCATCATTA‑AAAAAAA‑‑CAGTATCGTGATATTTTACGCAATGGTAGCAACCATGTTCATTTCCTCTGGTTAGATGGCGACTATGa > 1:1435537/1‑98 (MQ=255)
attgattgTCTGTTCATCATTA‑AAAAAAA‑‑CAGGATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTCCTCTGGTTAGATGGCGACTATGAAAc < 2:1675676/100‑1 (MQ=255)
aTTTATTGTCTGTTCATCATTA‑AAAAAAA‑‑CAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTCCTCTGGTTAGATGGCGACTATGAAAc < 1:1267581/100‑1 (MQ=255)
aTTGTCTGTTCATCATTA‑AAAAAAA‑‑CAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTCCTCTGGTTAGATGGCGACTATGAAACTAtt > 2:2842098/1‑100 (MQ=255)
tGTCTGTTCATCATTA‑AAAAAAA‑‑CAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTCCTCTGGTTAGATGGCGACTATGAAACTATtct < 2:1103476/100‑1 (MQ=255)
tGTCTGTTCATCATT‑‑AAAAAAAACCGGTATCGTGATATTTTACGCAAGGTAAAACCCCATGTTAATTTCTTCTGGTTAGATGGGGCCATTGAACCTAt > 1:1312109/1‑98 (MQ=255)
gTCTGTTCATCATT‑‑AAAAAAA‑‑CAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTCCTCTGGTTAGATGGCGACTATGAAACTATTCTcg < 1:2373273/100‑1 (MQ=255)
tCTGTTCATCATTA‑AAAAAAA‑‑CAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTCCTCTGGTTAGATGGCGACTATGAAACTATTCTcg < 1:994488/100‑1 (MQ=255)
tCTGTTCATCATTA‑AAAAAAA‑‑CAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTCCTCTGGTTAGATGGCGACTATGAAACTATTCTcg < 2:1056878/100‑1 (MQ=255)
tGTTCATCATTA‑AAAAAAA‑‑CAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTCCTCTGGTTAGATGGCGACTATGAAACTATTCTcgcg > 1:1199186/1‑100 (MQ=255)
gTTCATCATTA‑AAAAAAA‑‑CAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTCCTCTGGTTAGATGGCGACTATGAAACTATTCTcgcg > 1:1988508/1‑99 (MQ=255)
gTTCATCATTA‑AAAAAAA‑‑CAGTATCGTGATATTTTACGCAAGGGTAGCCACCATGTTCATTTCCTCTGGTTAGATGGCGACTATGAAACTATTCTcgcgc > 1:1893259/1‑100 (MQ=255)
ttCATCATTA‑AAAAAAA‑‑CAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTCCTCTGGTTAGATGGCGACTATGAAACTATTCTcgcgcg < 1:1491747/100‑1 (MQ=255)
ttCATCATTA‑AAAAAAA‑‑CAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTCCTCTGGTTAGATGGCGACTATGAAACTATTCTcgcgcg > 2:2075381/1‑100 (MQ=255)
tgcatcatTA‑AAAAAAA‑‑CAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTCCTCTGGTTAGATGGCGACTATGAAACTATTCTcgcgcg < 1:1770006/98‑1 (MQ=255)
tcatcaTTA‑AAAAAAA‑‑CAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTCCTCTGGTTAGATGGCGACTATGAAACTATTCTCGCGCGa > 2:2845955/1‑100 (MQ=255)
catcatTA‑AAAAAAA‑‑CAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTCCTCTGGTTAGATGGCGACTATGAAACTATTCTCGCGCGaa > 2:1276155/1‑100 (MQ=255)
tcatT‑‑AAAAAAA‑‑CAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTCCTCTGGTTAGATGGCGACTATGAAACTATTCTCGCGCGAATGc < 2:2242228/100‑1 (MQ=255)
|
TATCTGATGAAGATCGACTTCCCTGGCTGGAACGCTTAAATGATGCTTCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCATT‑‑AAAAAAA‑‑CAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTCCTCTGGTTAGATGGCGACTATGAAACTATTCTCGCGCGAATGC > NC_000913/4494777‑4494971
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
