Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A16 F201 I1 R1
|
82 |
135.0 |
6815619 |
92.9% |
6331710 |
99.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
4,494,883 |
(A)7→8 |
coding (261/564 nt) |
idnK → |
D‑gluconate kinase, thermosensitive |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,494,876 | 1 | . | A | 94.7%
| 400.7
/ 12.8
| 113 | coding (254/564 nt) | idnK | D‑gluconate kinase, thermosensitive |
| Reads supporting (aligned to +/- strand): ref base . (4/2); new base A (58/49); total (62/51) |
| Fisher's exact test for biased strand distribution p-value = 6.88e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 130 total aligned reads displayed.
TATCTGATGAAGATCGACTTCCCTGGCTGGAACGCTTAAATGATGCTTCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCAT‑CAT‑T‑‑AAA‑AAAACAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTCCTCTGGTTAGATGGCGACTATGAAACTATTCTCGCGCGAATGCAG > NC_000913/4494777‑4494973
|
tATCTGATGAAGATCGACTTCCCTGGCTGGAACGCTTAAATGATGCTTCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCAT‑CAt‑t < 1:2832918/100‑1 (MQ=255)
tATCTGATGAAGATCGACTTCCCTGGCTGGAACGCTTAAATGATGCTTCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCAT‑CAt‑t > 1:46834/1‑100 (MQ=255)
tATCTGATGAAGATCGACTTCCCTGGCTGGAACGCTTAAATGATGCTTCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCAT‑CAt‑t > 2:1181306/1‑100 (MQ=255)
aTCTGATGAAGATCGACTTCCCTGGCTGGAACGCTTAAATGATGCTTCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCAT‑CAT‑T‑‑a < 2:288914/100‑1 (MQ=255)
aTCTGATGAAGATCGACTTCCCTGGCTGGAACGCTTAAATGATGCTTCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCAT‑CAT‑T‑‑a < 2:2604719/100‑1 (MQ=255)
gatgaAGATCGACTTCCCTGGCTGGAACGCTTAAATGATGCTTCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCAT‑CAT‑T‑‑aaa‑aa > 1:2831814/1‑100 (MQ=255)
aaGATCGACTTCCCTGGCTGGAACGCTTAAATGATGCTTCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCAT‑CAT‑T‑‑aaa‑aaaaac < 1:1701943/100‑3 (MQ=255)
aaGATCGACTTCCCTGGCTGGAACGCTTAAATGATGCTTCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCAT‑CAT‑T‑‑aaa‑aaaaac < 2:1391356/100‑3 (MQ=255)
gATCGACTTCCCTGGCTGGAACGCTTAAATGATGCTTCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCAT‑CAT‑T‑‑aaa‑aaaaacag < 1:976629/100‑5 (MQ=255)
gATCGACTTCCCTGGCTGGAACGCTTAAATGATGCTTCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCAT‑CAT‑T‑‑aaa‑aaaaacag < 1:3137576/100‑5 (MQ=255)
gATCGACTTCCCTGGCTGGAACGCTTAAATGATGCTTCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCAT‑CAT‑T‑‑aaa‑aaaaacag < 1:2941069/100‑5 (MQ=255)
gATCGACTTCCCTGGCTGGAACGCTTAAATGATGCTTCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCAT‑CAT‑T‑‑aaa‑aaaaacag < 1:2223697/100‑5 (MQ=255)
gATCGACTTCCCTGGCTGGAACGCTTAAATGATGCTTCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCAT‑CAT‑T‑‑aaa‑aaaaacag > 2:890395/1‑96 (MQ=255)
cGACTTCCCTGGCTGGAACGCTTAAATGATGCTTCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCAT‑CAT‑TA‑AAA‑AAAACAGTAt > 2:2356094/1‑100 (MQ=255)
gACTTCCCTGGCTGGAACGCTTAAATGATGCTTCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCAT‑CAT‑TA‑AAA‑AAAACAGTAt > 1:1463967/1‑99 (MQ=255)
cTTCCCTGGCTGGAACGCTTAAATGATGCTTCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCAT‑CAT‑TA‑AAA‑AAAACAGTATCGt > 2:2746547/1‑100 (MQ=255)
tCCCTGGCTGGAACGCTTAAATGATGCTTCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCAT‑CAT‑TA‑AAA‑AAAACAGTATCGTGa > 1:3071842/1‑100 (MQ=255)
ccTGGCTGGAACGCTTAAATGATGCTTCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCAT‑CAT‑TA‑AAA‑AAAACAGTATCGTGata < 1:1128093/100‑1 (MQ=255)
ctggctggAACGCTTAAATGATGCTTCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCAT‑CAT‑TA‑AAA‑AAAACAGTATCGTGatat > 2:73943/1‑100 (MQ=255)
ggctggAACGCTTAAATGATGCTTCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCAT‑CAT‑TA‑AAA‑AAAACAGTATCGTGATAttt < 2:1463964/100‑1 (MQ=255)
gctggAACGCTTAAATGATGCTTCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCAT‑CAT‑TA‑AAA‑AAAACAGTATCGTGATAtttt < 1:858143/100‑1 (MQ=255)
gAACGCTTAAATGATGCTTCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCAT‑CAT‑TA‑AAA‑AAAACAGTATCGTGATATTTTACGc > 1:162580/1‑100 (MQ=255)
gAACGCTTAAATGATGCTTCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCAT‑CAT‑TA‑AAA‑AAAACAGTATCGTGATATTTTACGc < 1:2356101/100‑1 (MQ=255)
aaCGCTTAAATGATGCTTCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCAT‑CAT‑TA‑AAA‑AAAACAGTATCGTGATATTTTACGCa > 1:2322798/1‑100 (MQ=255)
aaCGCTTAAATGATGCTTCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCAT‑CAT‑TA‑AAA‑AAAACAGTATCGTGATATTTTACGCa > 1:1943780/1‑100 (MQ=255)
aCGCTTAAATGATGCTTCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCAT‑CAT‑TA‑AAA‑AAAACAGTATCGTGATATTTTACGCaa > 1:719379/1‑100 (MQ=255)
aCGCTTAAATGATGCTTCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCAT‑CAT‑TA‑AAA‑AAAACAGTATCGTGATATTTTACGCaa < 1:1187251/100‑1 (MQ=255)
cGCTTAAATGATGCTTCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCGT‑CAT‑TA‑AAA‑AAAACAGTATCGTGATATTTTACGCAAg < 2:1834127/100‑1 (MQ=255)
cGCTTAAATGATGCTTCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCAT‑CAT‑TA‑AAA‑AAAACAGTATCGTGATATTTTACGCAAg < 2:46834/100‑1 (MQ=255)
cTTAAATGATGCTTCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCAT‑CAT‑TA‑AAA‑AAAACAGTATCGTGATATTTTACGCAAggg > 2:3351163/1‑100 (MQ=255)
aaTGATGCTTCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCAT‑CATCA‑‑AAA‑AAAACAGTATCGTGATATTTTACGCAAGGGTa > 2:3247727/1‑98 (MQ=255)
aaTGATGCTTCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCAT‑CAT‑TA‑AAA‑AAAACAGTATCGTGATATTTTACGCAAGGGTAGc > 2:738890/1‑100 (MQ=255)
aaTGATGATTCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCAT‑CAT‑TA‑AAA‑AAAACAGTATCGTGATATTTTACGCAAGGGTAGc > 1:1798572/1‑100 (MQ=255)
atgatgCTTCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCAT‑CAT‑TA‑AAA‑AAAACAGTATCGTGATATTTTACGCAAGGGTAGcc < 1:533196/100‑1 (MQ=255)
tgatgCTTCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCAT‑CAT‑TA‑AAA‑AAAACAGTATCGTGATATTTTACGCAAGGGTAGccc > 1:2762508/1‑100 (MQ=255)
cttccgatcttACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCAT‑CAT‑TA‑AAA‑AAAACAGTATCGTGATATTTTACGCAAGGGTAGccc < 1:943816/90‑1 (MQ=255)
cttccgatcttACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCAT‑CAT‑TA‑AAA‑AAAACAGTATCGTGATATTTTACGCAAGGGTAGccc < 1:3031193/90‑1 (MQ=255)
atgCTTCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCAT‑CAT‑TA‑AAA‑AAAACAGTATCGTGATATTTTACGCAAGGGTAGccccc > 2:239306/1‑100 (MQ=255)
atgCTTCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCAT‑CAT‑TA‑AAA‑AAAACAGTATCGTGATATTTTACGCAAGGGTAGccccc > 1:3340369/1‑100 (MQ=255)
tgCTTCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCAT‑CAT‑TA‑AAA‑AAAACAGTATCGTGATATTTTACGCAAGGGTAGCCCCCa < 2:2930029/100‑1 (MQ=255)
gCTTCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCAT‑CAT‑TA‑AAA‑AAAACAGTATCGTGATATTTTACGCAAGGGTAGCCCCCAt > 2:1439850/1‑100 (MQ=255)
cTTCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCAT‑CAT‑TA‑AAA‑AAAACAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATg < 2:2063496/100‑1 (MQ=255)
tCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCAT‑CAT‑TA‑AAA‑AAAACAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATGtt > 2:2735353/1‑100 (MQ=255)
cATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCAT‑CAT‑TA‑AAA‑AAAACAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATGtt < 2:2371168/99‑1 (MQ=255)
cATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCAT‑CAT‑TA‑AAA‑AAAACAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTc > 2:3211394/1‑100 (MQ=255)
aTACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCAT‑CAT‑TA‑AAA‑AAAACAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCa < 1:2205449/100‑1 (MQ=255)
aTACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCAT‑CAT‑TA‑AAA‑AAAACAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCa > 2:1372429/1‑100 (MQ=255)
aTACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCAT‑CAT‑TA‑AAA‑AAAACAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCa > 1:2276853/1‑100 (MQ=255)
tACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCAT‑CAT‑TAAAAA‑AAAACAGTATCTTGTTTTTTTATGCAAGGGTAGCCCCAATGt > 2:2980748/1‑97 (MQ=255)
tACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCAT‑CAT‑TA‑AAA‑AAAACAGTATCGTGATATTTTACGCAAGGGTAGcccagatcggaag > 2:3031181/1‑90 (MQ=255)
tACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCAT‑CAT‑TA‑AAA‑AAAACAGTATCGTGATATTTTACGCAAGGGTAGcccagatcggaag > 2:943815/1‑90 (MQ=255)
aCAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCAT‑CAT‑TAAAAA‑AAAACAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCAt > 2:2041647/1‑100 (MQ=255)
aCAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCAT‑CAT‑TA‑AAA‑AAAACAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCAtt < 1:1423515/100‑1 (MQ=255)
cAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCAT‑CAT‑TA‑AAA‑AAAACAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCAttt < 2:1805909/100‑1 (MQ=255)
gTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCAT‑CAT‑TA‑AAA‑AAAACAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTcc < 2:3301111/100‑1 (MQ=255)
gTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCAT‑CAT‑TA‑AAA‑AAAACAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTcc < 1:996046/100‑1 (MQ=255)
cTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCAT‑CAT‑TA‑AAA‑AAAACAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTCctc > 2:2236551/1‑100 (MQ=255)
tttATAAAAAGAATGAAACAGGATTTATTGTCTGTTCAT‑CAT‑TA‑AAA‑AAAACAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTCctct < 2:3273692/100‑1 (MQ=255)
ttATAAAAAGAATGAAACAGGATTTATTGTCTGTTCAT‑CAT‑TA‑AAA‑AAAACAGTATCGTGATATTTTACTCAAGGGTAGCCCCCATGTTCATTTCCTCTg > 2:308752/1‑100 (MQ=255)
ttATAAAAAGAATGAAACAGGATTTATTGTCTGTTCAT‑CAT‑TA‑AAA‑AAAACAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTCCTCTg < 1:3097691/100‑1 (MQ=255)
cgatctaaaGAATGAAACAGGATTTATTGTCTGTTCAT‑CAT‑TA‑AAA‑AAAACAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTCCTCTg < 1:1780167/94‑1 (MQ=255)
tataAAAAGAATGAAACAGGATTTATTGTCTGTTCAT‑CAT‑TA‑AAA‑AAAACAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTCCTCTgg < 2:1333020/100‑1 (MQ=255)
ataAAAAGAATGAAACAGGATTTATTGTCTGTTCAT‑CAT‑TA‑AAA‑AAAACAGTATCGTGATATTTTACGCAAGGGTAGCCCCCGTGTTCATTTCCTCTGGt > 1:631308/1‑100 (MQ=255)
taAAAAGAATGAAACAGGATTTATTGTCTGTTCAT‑CAT‑TA‑AAA‑AAAACAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTCCTCTGGtt < 2:224292/100‑1 (MQ=255)
aaaaaGAATGAAACAGGATTTATTGTCTGTTCAT‑CAT‑TA‑AAA‑AAAACAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTCCTCTGGTTa < 1:610839/100‑1 (MQ=255)
aaaaGAATGAAACAGGATTTATTGTCTGTTCAT‑CAT‑TA‑AAA‑AAAACAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTCCTCTGGTTAg < 1:3211407/100‑1 (MQ=255)
aaaGAATGAAACAGGATTTATTGTCTGTTCAT‑CAT‑TA‑AAA‑AAAACAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTCCTCTgagatcg > 2:1780163/1‑94 (MQ=255)
aaaGAATGAAACAGGATTTATTGTCTGTTCAT‑CAT‑TA‑AAA‑AAAACAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTCCTCTGGTTAGa > 2:745704/1‑100 (MQ=255)
aaGAATGAAACAGGATTTATTGTCTGTTCAT‑CAT‑TA‑AAA‑AAAACAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTCCTCTGGTTAGAt < 1:2746557/100‑1 (MQ=255)
aaGAATGAAACAGGATTTATTGTCTGTTCAT‑CAT‑TA‑AAA‑AAAACAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTCCTCTGGTTAGAt < 1:278691/100‑1 (MQ=255)
aaGAATGAAACAGGATTTATTGTCTGTTCAT‑CAT‑TA‑AAA‑AAAACAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTCCTCTGGTTAGAt < 1:1373206/100‑1 (MQ=255)
aaTGAAATAGGTTTTATTTTCTGTTCATAAAT‑A‑‑AAA‑AAAACAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTCCTCTGGTTAGAt < 2:54979/97‑1 (MQ=255)
tGAAACAGGATTTATTGTCTGTTCAT‑CAT‑TA‑AAA‑AAAACAGTATCGTGATATTTTACGCAAGGATAGCCCCCATGTTCATTTCCTCTGGTTAGATGGCGa > 2:607618/1‑100 (MQ=255)
gAAACAGGATTTATTGTCTGTTCAT‑CAT‑TA‑AAA‑AAAACAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTCCTCTGGTTAGATGGCGAc > 2:99092/1‑100 (MQ=255)
gAAACAGGATTTATTGTCTGTTCAT‑CAT‑TA‑AAA‑AAAACAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTCCTCTGGTTAGATGGCGAc > 2:3304448/1‑100 (MQ=255)
gAAACAGGATTTATTGTCTGTTCAT‑CAT‑TA‑AAA‑AAAACAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTCCTCTGGTTAGATGGCGAc < 1:745704/100‑1 (MQ=255)
aaaCAGGATTTATTGTCTGTTCAT‑CAT‑TA‑AAA‑AAAACAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTCCTCTGGTTAGATGGCGACt > 1:1188899/1‑100 (MQ=255)
aaCAGGATTTATTGTCTGTTCAT‑CAT‑TA‑AAA‑AAAACAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTCCTCTGGTTAGATGGCGACTa < 1:1185732/100‑1 (MQ=255)
aaCAGGATTTATTGTCTGTTCAT‑CAT‑TA‑AAA‑AAAACAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTCCTCTGGTTAGATGGCGACTa > 2:2800271/1‑100 (MQ=255)
aaCAGGATTTATTGTCTGTTCAT‑CAT‑T‑‑AAAGAAGACAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTCCTCTGGTTATATGGCGACTa > 2:2234060/1‑100 (MQ=255)
aCAGGATTTATTGTCTGTTCAT‑CAT‑TA‑AAA‑AAAACAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTCCTCTGGTTAGATGGCGACTAt < 2:3071830/100‑1 (MQ=255)
aCAGGATTTATTGTCTGTTCAT‑CAT‑TA‑AAA‑AAAACAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTCCTCTGGTTAGATGGCGACTAt < 1:659199/100‑1 (MQ=255)
aCAGGATTTATTGTCTGTTCAT‑CAT‑T‑‑AAA‑AAAACAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTCCTCTGGTTAGATGGCGACTATg > 1:23856/1‑100 (MQ=255)
gATTTATTGTCTGTTCAT‑CAT‑TA‑AAA‑AAAACAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTCCTCTGGTTAGATGGCGACTATGaaa < 2:1335499/100‑1 (MQ=255)
gATTTATTGTCTGTTCAT‑CAT‑TA‑AAA‑AAAACAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTCCTCTGGTTAGATGGCGACTATGaaa > 2:2802755/1‑100 (MQ=255)
gATTTATTGTCTGTTCAT‑CAT‑T‑‑AAA‑AAAACAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTCCTCTGGTTAGATGGCGACTATGAAAc < 2:23856/100‑1 (MQ=255)
ccgatctGTCTGTTCAT‑CAT‑TA‑AAA‑AAAACAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTCCTCTGGTTAGATGGCGACTATGAAAc < 1:246759/94‑1 (MQ=255)
aTTTATTGTCTGTTCAT‑CAT‑TA‑AAA‑AAAACAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTCCTCTGGTTAGATGGCGACTATGAAAc < 1:540671/100‑1 (MQ=255)
ttATTGTCTGTTCAT‑CAT‑TA‑AAA‑AAAACAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTCCTCTGGTTAGATGGCGACTATGAAACTa < 1:3184875/100‑1 (MQ=255)
tATTGTCTGTTCAT‑CAT‑TA‑AAA‑AAAACAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTCCTCTGGTTAGATGGCGACTATGAAACTAt > 1:887959/1‑100 (MQ=255)
aTTGTCTGTTCAT‑CAT‑TA‑AAA‑AAAACAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTCCTCTGGTTAGATGGCGACTATGAAACTAtt < 2:1188896/100‑1 (MQ=255)
tGTCTGTTCAT‑CAT‑TA‑AAA‑AAAACAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTCCTCTGGTTAGATGGCGACTATGAAACTATtct > 2:1167125/1‑100 (MQ=255)
gTCTGTTCAT‑CAT‑TA‑AAA‑AAAACAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTCCTCTGGTTAGATGGCGACTATGAAACTATtctc > 1:600912/1‑100 (MQ=255)
gTCTGTTCAT‑CAT‑TA‑AAA‑AAAACAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTCCTCTGGTTAGATGGCGACTATGAAACTATtctc < 2:2090875/100‑1 (MQ=255)
tGTTCAT‑CAT‑TA‑AAA‑AAAACAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTCCTCTGGTTAGATGGCGACTATGAAACTATTCTcgcg > 1:3163264/1‑100 (MQ=255)
gTTCAT‑CAT‑TA‑AAA‑AAAACAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTCCTCTGGTTAGATGGCGACTATGAAACTATTCTcgcgc > 2:1141286/1‑100 (MQ=255)
cat‑cat‑TA‑AAA‑AAAACAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTCCTCTGGTTAGATGGCGACTATGAAACTATTCTCGCGCGaa > 2:1952120/1‑100 (MQ=255)
at‑cat‑TA‑AAA‑AAAACAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTCCTCTGGTTAGATGGCGACTATGAAACTATTCTCGCGCGAAt > 1:1933659/1‑100 (MQ=255)
t‑cat‑TA‑AAA‑AAAACAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTCCTCTGGTTAGATGGCGACTATGAAACTATTCTCGCGCGAATg > 1:3325304/1‑100 (MQ=255)
t‑‑AAA‑AAAACAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTCCTCTGGTTAGATGGCGACTATGAAACTATTCTCGCGCGAATGCAg < 1:166998/98‑1 (MQ=255)
|
TATCTGATGAAGATCGACTTCCCTGGCTGGAACGCTTAAATGATGCTTCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCAT‑CAT‑T‑‑AAA‑AAAACAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTCCTCTGGTTAGATGGCGACTATGAAACTATTCTCGCGCGAATGCAG > NC_000913/4494777‑4494973
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
