Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A8 F183 I0 R1
|
119 |
96.4 |
4778198 |
94.0% |
4491506 |
99.8 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NC_000913 |
4,494,883:1 |
(A)7→8 |
100% |
coding (261/564 nt) |
idnK → |
D‑gluconate kinase, thermosensitive |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,494,876 | 1 | . | A | 91.5%
| 299.1
/ 20.1
| 94 | coding (254/564 nt) | idnK | D‑gluconate kinase, thermosensitive |
| Reads supporting (aligned to +/- strand): ref base . (1/7); new base A (43/43); total (44/50) |
| Fisher's exact test for biased strand distribution p-value = 6.31e-02 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 119 total aligned reads displayed.
TATCTGATGAAGATCGACTTCCCTGGCTGGAACGCTTAAATGATGCTTCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCA‑T‑T‑‑AAA‑A‑AAA‑CAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTCCTCTGGTTAGATGGCGACTATGAAACTATTCTCGCGCGAATG > NC_000913/4494777‑4494970
|
tATCTGATGAAGATCGACTTCCCTGGCTGGAACGCTTAAATGATGCTTCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCA‑t‑t < 1:1751287/100‑1 (MQ=255)
tATCTGATGAAGATCGACTTCCCTGGCTGGAACGCTTAAATGATGCTTAATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCA‑t‑t > 2:2377009/1‑100 (MQ=255)
aTCTGATGAAGATCGACTTCCCTGGCTGGAACGCTTAAATGATGCTTCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCA‑T‑T‑‑a < 2:1511522/100‑1 (MQ=255)
aTCTGATGAAGATAGACTTCCCTGGCTGGAACGCTTAAATGATGCTTCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCA‑t‑t < 2:862960/99‑1 (MQ=255)
cTGATGAAGATCGACTTCCCTGGCTGGAACGCTTAAATGATGCTTCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCA‑T‑T‑‑aaa > 1:1652454/1‑100 (MQ=255)
tgatgaAGATCGACTTCCCTGGCTGGAACGCTTAAATGATGCTTCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCA‑T‑T‑‑aaa‑a > 2:220445/1‑100 (MQ=255)
tgaAGATCGACTTCCCTGGCTGGAACGCTTAAATGATGCTTCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCA‑T‑T‑‑aaa‑a‑aaa > 1:366162/1‑100 (MQ=255)
tgaAGATCGACTTCCCTGGCTGGAACGCTTAAATGATGCTTCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCA‑T‑T‑‑aaa‑a‑a > 1:855053/1‑98 (MQ=255)
aaGATCGACTTCCCTGGCTGGAACGCTTAAATGATGCTTCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCA‑T‑T‑‑aaa‑a‑aaaac < 1:620881/100‑3 (MQ=255)
aaGATCGACTTCCCTGGCTGGAACGCTTAAATGATGCTTCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCA‑T‑T‑‑aaa‑a‑aaaac > 2:1559875/1‑98 (MQ=255)
aGATCGACTTCCCTGGCTGGAACGCTTAAATGATGCTTCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTTTCTGTTCATCA‑T‑T‑‑aaa‑a‑aaaaca > 2:1843088/1‑97 (MQ=255)
aGATCGACTTCCCTGGCTGGAACGCTTAAATGATGCTTCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGCCTGTTCATCA‑T‑T‑‑aaa‑a‑aaaaca > 1:94745/1‑97 (MQ=255)
gATCGACTTCCCTGGCTGGAACGCTTAAATGATGCTTCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCA‑T‑T‑‑aaa‑a‑aaaacag < 1:63817/100‑5 (MQ=255)
gATCGACTTCCCTGGCTGGAACGCTTAAATGATGCTTCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCA‑T‑T‑‑aaa‑a‑aaaacag < 1:2341003/100‑5 (MQ=255)
gATCGACTTCCCTGGCTGGAACGCTTAAATGATGCTTCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCA‑T‑T‑‑aaa‑a‑aaaacag > 2:123277/1‑96 (MQ=255)
gATCGACTTCCCTGGCTGGAACGCTTAAATGATGCTTCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCA‑T‑T‑‑aaa‑a‑aaaacag > 2:2364159/1‑96 (MQ=255)
gATCGACTTCCCTGGCTGGAACGCTTAAATGATGCTTCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCA‑T‑T‑‑AAA‑A‑AAA‑CAg < 1:2243256/99‑1 (MQ=255)
aTCGACTTCCCTGGCTGGAACGCTTAAATGATGCTTCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCA‑T‑T‑‑aaa‑a‑aaaacagt > 2:506492/1‑95 (MQ=255)
aTCGACTTCCCTGGCTGGAACGCTTAAATGATGCTTCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCA‑T‑T‑‑aaa‑a‑aaaacagt < 1:953851/100‑6 (MQ=255)
aTCGACTTCCCTGGCTGGAACGCTTAAATGATGCTTCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCA‑T‑T‑‑aaa‑a‑aaaacagt > 2:1202978/1‑95 (MQ=255)
gACTTCCCTGGCTGGAACGCTTAAATGATGCTTCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCA‑T‑TA‑AAA‑A‑AAA‑CAGTATc > 2:729837/1‑100 (MQ=255)
atttCCCTGGCTGCAACGCTTAAATGATGCTACATACAGTCTATATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCA‑T‑TA‑AAA‑A‑AAA‑CAGTATCg > 1:1612561/3‑100 (MQ=255)
aCTTCCCTGGCTGGAACGCTTAAATGATGCTTCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCA‑T‑TA‑AAA‑A‑AAA‑CAGTATCg < 1:189323/100‑1 (MQ=255)
cTTCCCTGGCTGGAACGCTTAAATGATGCTTCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCA‑T‑TA‑AAA‑A‑AAA‑CAGTa > 1:61953/1‑96 (MQ=255)
tCCCTGGCTGGAACGCTTAAATGATGCTTCATACAGTCTTTATAAAACGAATGAAACAGGATTTATTGTCTGTTCATCA‑T‑TA‑AAA‑A‑AAA‑CAGTATCg > 1:1804349/1‑97 (MQ=255)
tCCCTGGCTGGAACGCTTAAATGATGCTTCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCA‑T‑TA‑AAA‑A‑AAA‑CAGTATCGTGa < 1:1553162/100‑1 (MQ=255)
cccTGGCTGGAACGCTTAAATGATGCTTCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCA‑T‑TA‑AAA‑A‑AAA‑CAGTATCGTGat > 2:2132943/1‑100 (MQ=255)
ctggAACGCTTAAATGATGCTTCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCA‑T‑TA‑AAA‑A‑AAA‑CAGTATCGTGATAtttt > 2:2101734/1‑99 (MQ=255)
ctggAACGCTTAAATGATGCTTCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCA‑T‑TA‑AAA‑A‑AAA‑CAGTATCGTGATATTTTa > 1:2333975/1‑100 (MQ=255)
ctggAACGCTTAAATGATGCTTCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCA‑T‑TA‑AAA‑A‑AAA‑CAGTATCGTGATATTTTa > 1:2334060/1‑100 (MQ=255)
tggAACGCTTAAATGATGCTTCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCA‑T‑TA‑AAA‑A‑AAA‑CAGTATCGTGATATTTTAc < 1:1469940/100‑1 (MQ=255)
ggAACGCTTAAATGATGCTTCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCA‑T‑TA‑AAA‑A‑AAA‑CAGTATCGTGATATTTTACg < 1:1649203/100‑1 (MQ=255)
ggAACGCTTAAATGATGCTTCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCA‑T‑T‑‑AAA‑AGAAA‑CAGTATCGTGATATTTTACg < 1:352465/100‑1 (MQ=255)
aaCGCTTAAATGATGCTTCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCA‑T‑TA‑AAA‑A‑AAA‑CAGTATCGTGATATTTTACGCa < 1:461646/100‑1 (MQ=255)
gattAAATGATGCTTTATACGGTCTTTATAAAAAGAATGAGACAGGATTTATTGTCTGAAAAAAA‑A‑AA‑AAA‑A‑AAA‑CAGTATCGTGATATTTTACGCAAgg < 2:1320648/98‑1 (MQ=255)
cTTAAATGATGCTTCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCA‑T‑TA‑AAA‑A‑AAA‑CAGTATCGTGATATTTTACGCAAggg > 1:1993920/1‑100 (MQ=255)
cTTAAATGATGCTTCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGGCTGTTCATCA‑T‑TA‑AAA‑A‑AAA‑CAGGATCGTGATATTTTACGCAAgg > 2:14971/1‑99 (MQ=255)
ttAAATGATGCTTCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCA‑T‑TAAAAA‑A‑AAA‑CAGTATCGTGATATTTTACGCAAggg < 1:328585/100‑1 (MQ=255)
tAAATGATGCTTCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCA‑T‑TA‑AAA‑A‑AAA‑CAGTATCGTGATATTTTACGCAAGGGTa > 1:938814/1‑100 (MQ=255)
tAAATGAGGCTACATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCA‑T‑TA‑AAA‑A‑AAA‑CAGTATCGTGATATTTTACGCAAGGGTa > 2:1253931/1‑100 (MQ=255)
aaTGATGGTTCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTTTCTGTTCATCA‑T‑TA‑AAA‑A‑AAA‑CAGTATCGTGATATTTTACGCAAggg < 2:2330802/96‑1 (MQ=255)
atgCTTCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTTTCTGTTCATCA‑T‑TA‑AAA‑A‑AAA‑CAGTATCGTGATATTTTACGCAAgggcacctccc > 1:1074957/1‑92 (MQ=255)
tgCTTCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCA‑T‑TA‑AAA‑A‑AAA‑CAGTATCGTGATATTTTACGCAAGGGTAGCCCCCa < 1:668239/100‑1 (MQ=255)
tgCTTCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCA‑T‑TA‑AAA‑A‑AAA‑CAGTATCGTGATATTTTACGCAAGGGTAGCCCCCa < 2:413427/100‑1 (MQ=255)
tgCTTCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCA‑T‑TA‑AAA‑A‑AAA‑CAGTATCGTGATATTTTACGCAAGGGTAGCCCCCa < 1:1274099/100‑1 (MQ=255)
tcTTCATACAGTCTTTATAAAAAGAATGAAACAGGATTTCTTGTCTGTTCATCA‑T‑T‑‑AAA‑A‑AAACCAGTATCGTGATATTTTACGCAAGGGTAGCCCCCAt < 2:1671200/99‑1 (MQ=255)
ttCATACAGTATTTATAAAAAGAATGAAACAGGATTTGTTGTCAATTAAACA‑A‑AA‑AAA‑A‑AAA‑CAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATg < 2:1705830/99‑1 (MQ=255)
tCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCA‑T‑TA‑AAA‑A‑AAA‑CAGTATCGTGATATTTTACGCAAGGGTAGCCCCCAtaga > 1:1671213/1‑97 (MQ=255)
tCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCA‑T‑TA‑AAA‑A‑AAA‑CAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATGtt < 2:549514/100‑1 (MQ=255)
cATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCA‑T‑TA‑AAA‑A‑AAA‑CAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTc > 2:1957602/1‑100 (MQ=255)
cATACAGTCTTTATAAAAAGAATGAAACAGGATGTATTGTCTGTTCATCA‑T‑TA‑AAA‑A‑AAA‑CAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTc > 2:1428414/1‑100 (MQ=255)
ttACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCA‑T‑TA‑AAA‑A‑AAA‑CAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCa < 2:106101/99‑1 (MQ=255)
tACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTTTGTTCATAA‑T‑TA‑AAA‑A‑AAA‑CAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCAt > 2:1475687/1‑100 (MQ=255)
tACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCA‑T‑TA‑AAA‑A‑AAA‑CAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCa > 1:106102/1‑99 (MQ=255)
tACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCA‑T‑TA‑AAA‑A‑AAA‑CAGTATCGTGATATTTTACGCAAGGGTAGCCACCATGTTCAt > 2:1265491/1‑100 (MQ=255)
cAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCA‑T‑TA‑AAA‑A‑AAA‑CAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCAttt > 1:1486092/1‑100 (MQ=255)
gtgtggatgaaaaGAAGGATGGAGGTTTTATTGTGTGGTGATCAGT‑A‑‑AAA‑A‑AAA‑CAGTATCGTGATATTTTACGCAAGGGTAGCCCTCATGTTCATTTc < 2:1926744/90‑1 (MQ=255)
cTTTATAAAAAGAATGAAACAGGCTTTATTGTCTGTTCATCA‑T‑T‑‑AAA‑A‑AAA‑CAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTCctct > 2:881018/1‑100 (MQ=255)
cTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCA‑T‑TA‑AAA‑A‑AAA‑CAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTCctc > 2:1236140/1‑100 (MQ=255)
cTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCA‑T‑TA‑AAA‑A‑AAA‑CAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTCctc > 2:1123059/1‑100 (MQ=255)
cTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTAAAAA‑T‑TA‑AAA‑A‑AAA‑CAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTCctc < 1:2328267/100‑1 (MQ=255)
ttATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCA‑T‑TA‑AAA‑A‑AAA‑CAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTCCTCTg < 1:1698098/100‑1 (MQ=255)
tataAAAAGAATGAAACAGGATTTATTGTCTGTTCATCA‑T‑TA‑AAA‑A‑AAA‑CAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTCCTCTgg < 2:870865/100‑1 (MQ=255)
tataAAAAGAATGAAACAGGATTTATTGTCTGTTCATCA‑T‑TA‑AAA‑A‑AAA‑CAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTCCTCTgg > 2:1663145/1‑100 (MQ=255)
taAAAAGAATGAAACAGGATTTATTGTCTGTTCATCA‑T‑TA‑AAA‑A‑AAA‑CAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTCCTCTGGtt < 1:1719739/100‑1 (MQ=255)
taAAAAGAATGAAACAGGATTTATTGTCTGTTCATCA‑T‑TA‑AAA‑A‑AAA‑CAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTCCTCTGGtt < 1:1719976/100‑1 (MQ=255)
taAAAAGAATGAAACAGGATTTATTGTCTGTTCATCA‑T‑TA‑AAA‑A‑AAA‑CAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTCCTCTGGtt < 1:1900302/100‑1 (MQ=255)
aaaaaGAATGAAACAGGATTTATTGTCTGTTCATCA‑T‑TA‑AAA‑A‑AAA‑CAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTCCTCTGGTTa > 1:832351/1‑100 (MQ=255)
aaaaGAATGAAACAGGATTTATTGTCTGTTCATCA‑T‑TAAAAA‑A‑AAA‑CAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTCCTCTGGTTa > 2:1770033/1‑100 (MQ=255)
aaaaGAATGAAACAGGATTTATTGTCTGTTCATCA‑T‑TA‑AAA‑A‑AAA‑CAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTCCTCTGGTTAg > 1:446361/1‑100 (MQ=255)
aaaGAATGAAACAGGATTTATTGTCTGTTCATCA‑T‑TA‑AAA‑A‑AAA‑CAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTCCTCTGGTTAGa > 2:759863/1‑100 (MQ=255)
aaaGAATGAAACAGGATTTATTATCTGTTCATCA‑T‑TA‑AAA‑A‑AAA‑CAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTCCTCTGGTTAGa < 2:405662/100‑1 (MQ=255)
aaaGAATAAAACAGGATTTATTGTATGTTCATCA‑T‑T‑‑AAA‑AGAAA‑CAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATATCCTCTGGTTa < 2:832741/98‑1 (MQ=255)
gAATGAAACAGGATTTATTGTCTGTTCATCA‑T‑TA‑AAA‑A‑AAA‑CAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTCCTCTGGTTAGATgg > 2:653511/1‑100 (MQ=255)
gAATGAAACAGGATTTATTGTCTGTTCATCA‑T‑TA‑AAA‑A‑AAA‑CAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTCCTCTGGTTAGATgg < 1:1091829/100‑1 (MQ=255)
gAATGAAACAGGATTTATTGTCTGTTCATCA‑T‑TA‑AAA‑A‑AAA‑CAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTCCTCTGGTTAGATgg < 2:1840643/100‑1 (MQ=255)
aTGAAACAGGATTTATTGTCTGTTCATCA‑T‑TA‑AAA‑A‑AAA‑CAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTCCTCTGGTTAGATGGCg < 1:1593361/100‑1 (MQ=255)
aTGAAACAGGATTTATTGTCTGTTCATCA‑T‑TA‑AAA‑A‑AAA‑CAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTCCTCTGGTTAGATGGCg < 1:1209942/100‑1 (MQ=255)
aTGAAACAGGATTTATTGTCTGTTCATCA‑T‑TA‑AAA‑A‑AAA‑CAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTCCTCTGGTTAGATGGCg > 1:213630/1‑100 (MQ=255)
gAAACAGGATTTATTGTCTGTTCATCA‑T‑TA‑AAA‑A‑AAA‑CAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTCCTCTGGTTAGATGGCGa > 2:672035/1‑99 (MQ=255)
aaCAGGATTTATTGTCTGTTCATCA‑T‑TA‑AAA‑A‑AAA‑CAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTCCTCTGGTTAGATGGCGACTa < 1:698994/100‑1 (MQ=255)
aCAGGATTTATTGTCTGTTCATCA‑T‑TA‑AAA‑A‑AAA‑CAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTCCTCTGGTTAGATGGCGACTAt > 1:2375404/1‑100 (MQ=255)
aGGATTTATTGTCTGTTCATCA‑T‑TA‑AAA‑A‑AAA‑CAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTCCTCTGGTTAGATGGCGACTATGa < 1:978062/100‑1 (MQ=255)
gATTTATTGTCTGTTCATCA‑T‑TA‑AAA‑A‑AAA‑CAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTCCTCTGGTTAGATGGCGACTATGaa < 2:527743/99‑1 (MQ=255)
tttATTGTCTGTTCATCA‑T‑TA‑AAA‑A‑AAA‑CAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTCCTCTGGTTAGATGGCGACTATGAAACt > 2:1146521/1‑100 (MQ=255)
tGTCTGTTCATCA‑T‑TA‑AAA‑A‑AAA‑CAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTCCTCTGGTTAGATGGCGACTATGAAACTATtct < 1:1902875/100‑1 (MQ=255)
tGTCTGTTCATCA‑T‑TA‑AAA‑A‑AAA‑CAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTCCTCTGGTTAGATGGCGACTATGAAACTATtct > 2:706341/1‑100 (MQ=255)
tGTCTGTTCATCA‑T‑TA‑AAA‑A‑AAA‑CAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTCCTCTGGTTAGATGGCGACTATGAAACTATtct < 1:1554671/100‑1 (MQ=255)
tGTCTGTTCATCA‑T‑TA‑AAA‑A‑AAA‑CAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTCCTCTGGTTAGATGGCGACTATGAAACTATtc > 1:1542263/1‑99 (MQ=255)
gTCTGTTCATCA‑T‑TA‑AAA‑A‑AAA‑CAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTCCTCTGGTTAGATGGCGACTATGAAACTATtctc < 1:826213/100‑1 (MQ=255)
tCTGTTAAGCA‑T‑T‑‑AAAGA‑AAT‑GAGTATCGTGATATTTTATGCAAGGGTGGCACATATGTTACATTCGTGTGGTTAGATGGCGACTATGAAACTATtctc < 2:1074953/99‑1 (MQ=255)
cTGTTCATCA‑T‑TA‑AAA‑A‑AAA‑CAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTCCTCTGGTTAGATGGCGACTATGAAACTATTCTcgc < 1:1833216/100‑1 (MQ=255)
tGTTCATCA‑T‑TA‑AAA‑A‑AAA‑CAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTCCTCTGGTTAGATGGCGACTATGAAACTATTCTcgcg > 1:76790/1‑100 (MQ=255)
tGTTCATCA‑T‑TA‑AAA‑A‑AAA‑CAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTCCTCTGGTTAGATGGCGACTATGAAACTATTCTcgcg < 2:1238045/100‑1 (MQ=255)
gTTCATCA‑T‑TA‑AAA‑A‑AAA‑CAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTCCTCTGGTTAGATGGCGACTATGAAACTATTCTcgcgc > 2:1475827/1‑100 (MQ=255)
gTTCATCA‑T‑TA‑AAA‑A‑AAA‑CAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTCCTCTGGTTAGATGGCGACTATGAAACTATTCTcgcg > 2:81072/1‑99 (MQ=255)
ttCATCA‑TAG‑‑AAG‑A‑AAA‑CAGTATCGTGATATTTTACGCAGGGGGAGGCGCCAGGTGCATTTCCTCTGGTTAGGTGGCGACTATGAAGGTATTCTcgcgcc < 1:2377030/100‑2 (MQ=255)
ttCATCA‑T‑TA‑AAA‑A‑AAA‑CAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTCCTCTGGTTAGATGGCGACTATGAAACTATTTTcgcgcg < 1:1253938/100‑1 (MQ=255)
tcatca‑T‑TA‑AAA‑A‑AAA‑CAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTCCTCTGGTTAGATGGCGACTATGAAACTATTCTCGCGCGa < 1:985374/100‑1 (MQ=255)
tca‑t‑TA‑AAA‑A‑AAA‑CAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTCCTCTGGTTAGATGGCGACTATGAAACTATTCTCGCGCGAATg > 2:1958650/1‑100 (MQ=255)
|
TATCTGATGAAGATCGACTTCCCTGGCTGGAACGCTTAAATGATGCTTCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCA‑T‑T‑‑AAA‑A‑AAA‑CAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTCCTCTGGTTAGATGGCGACTATGAAACTATTCTCGCGCGAATG > NC_000913/4494777‑4494970
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
