Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A16 F258 I0 R1
|
432 |
103.0 |
5191697 |
92.7% |
4812703 |
99.8 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NC_000913 |
4,494,883:1 |
(A)7→8 |
100% |
coding (261/564 nt) |
idnK → |
D‑gluconate kinase, thermosensitive |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,494,876 | 1 | . | A | 92.4%
| 249.2
/ 13.3
| 79 | coding (254/564 nt) | idnK | D‑gluconate kinase, thermosensitive |
| Reads supporting (aligned to +/- strand): ref base . (2/4); new base A (37/35); total (39/40) |
| Fisher's exact test for biased strand distribution p-value = 6.75e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.48e-01 |
CTGATGAAGATCGACTTCCCTGGCTGGAACGCTTAAATGATGCTTCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCATT‑‑AAAAA‑A‑ACAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTCCTCTGGTTAGATGGCGACTATGAAACTATTCTCGCGCGAATGCAG > NC_000913/4494780‑4494973
|
ctaatgaAGATCGACTTCCCTGGCTGGAACGCTTAAATGATGCTTCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCATT‑‑aaa < 2:1771789/97‑1 (MQ=255)
gatgaAGATCGACTTCCCTGGCTGGAACGCTTAAATGATGCTTCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCATT‑‑aaaaa < 1:1960797/100‑1 (MQ=255)
gatgaAGATCGACTTCCCTGGCTGGAACGCTTAAATGATGCTTCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCATT‑‑aaaaa > 1:2389757/1‑100 (MQ=255)
atgaAGATCGACTTCCCTGGCTGGAACGCTTAAATGATGCTTCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCCTCATT‑‑aaaaa‑a > 2:2408343/1‑100 (MQ=255)
aagaAGATCGACATACCTTGCTGGTACGCTTAAATGATACTTCATACAGTCTTTATAAAAAGAATTAAACAGTATTTATTGTCTGTTCATCATT‑‑aaaa < 1:1549955/96‑1 (MQ=255)
tgaAGATCGACTTCCCTGGCTGGAACGCTTAAATGATGCTTCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCATT‑‑aaaaa‑a‑a < 1:2005664/100‑1 (MQ=255)
tgaAGATCGACTTCCCTGGCTGGAACGCTTAAATGATGCTTCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCATT‑‑aaaaa‑a‑a < 2:1924750/100‑1 (MQ=255)
gaAGATCGACTTCCCTGGCTGGAACGCTTAAATGATGCTTCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCATT‑‑aaaaa‑a‑aa > 2:1208721/1‑99 (MQ=255)
aaGATCGACTTCCCTGGCTGGAACGCTTAAATGATGCTTCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCATT‑‑aaaaa‑a‑aac < 2:1922595/100‑3 (MQ=255)
aaGATCGACTTCCCTGGCTGGAACGCTTAAATGATGCTTCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCATT‑‑aaaaa‑a‑aa > 1:487643/1‑98 (MQ=255)
aGATCGACTTCCCTGGCTGGAACGCTTAAATGATGCTTCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCATT‑‑aaaaa‑a‑aaca < 2:1157019/100‑4 (MQ=255)
gATCGACTTCCCTGGCTGGAACGCTTAAATGATGCTTCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCATT‑‑aaaaa‑a‑aacag < 1:1858139/100‑5 (MQ=255)
gATCGACTTCCCTGGCTGGAACGCTTAAATGATGCTTCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCATT‑‑aaaaa‑a‑aacag > 2:2197542/1‑96 (MQ=255)
gATCGACTTCCCTGGCTGGAACGCTTAAATGATGCTTCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCATT‑‑aaaaa‑a‑aacag < 2:516520/100‑5 (MQ=255)
gATCGACTTCCCTGGCTGGAACGCTTAAATGATACTTCATACAGTCTTTATAAAAAGAATGAAACAGGATATATTGTCTGTTCATCATT‑‑aaaaa‑a‑aacag > 1:1554745/1‑96 (MQ=255)
ttCCTTGGCTGGAACTCTTACATGATGCTTCATAAAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCATT‑‑AAAAA‑AGACAGTATCGTg < 1:1362193/100‑1 (MQ=255)
ttCCCTGGCTGGAACGCTTAAATGATGCTTCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCATTA‑AAAAA‑A‑ACAGTATCGTg < 2:1788504/100‑1 (MQ=255)
tCCCTGGCTGGAACGCTTAAATGATGCTTCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCATTA‑AAAAA‑A‑ACAGTATCGTGa > 1:434549/1‑100 (MQ=255)
cccTGGCTGGAACGCTTAAATGATGCGTCATACAGTCTTTATAAAAAGAATGAAACATGATTTATTTTCTGTTAATCATTA‑AAAAA‑A‑ACAGTATCGTg < 1:106631/98‑1 (MQ=255)
ccTGGCTGGAACGCTTAAATGATGCTTCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCATTAAAAAAA‑A‑ACAGTATCGTGat > 2:1727201/1‑100 (MQ=255)
ctggctggAACGCTTAAATGATGCTTCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCATTA‑AAAAA‑A‑ACAGTATCGTGatat > 1:2496410/1‑100 (MQ=255)
tggctagAACGCTTAAATGATGCTTCATACAGTCTTTATAAAAAAAATGAAACAGGATTTATTGTCTGTTCATCATTA‑AAAAA‑A‑ACAGTATCGTGa < 1:205413/96‑1 (MQ=255)
gctggAACGCTTAAATGATGCTTCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCATTA‑AAAAA‑A‑ACAGTATCGTGATAtttt > 2:321731/1‑100 (MQ=255)
ctggAACGCTTAAATGATGCTTCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCATTA‑AAAAA‑A‑ACAGTATCGTGATATTTTa > 1:1187848/1‑100 (MQ=255)
ggAACGCTTAAATGATGCTTCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCATTA‑AAAAA‑A‑ACAGTATCGTGATATTTTACg > 2:1627096/1‑100 (MQ=255)
gCTTAAATGATGCTTCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCATTA‑AAAAA‑A‑ACAGTATCGTGATATTTTACGCAAgg < 2:2031870/100‑1 (MQ=255)
gCTTAAATGATGCTTCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCATTA‑AAAAA‑A‑ACAGTATCGTGATATTTTACGCAAgg < 1:1441398/100‑1 (MQ=255)
cttgactgatgCTTCATACAATCATGATAAAAATAATGAAACAGAATTTATTGTCTTTTTATCATTA‑AAAAA‑A‑ACCGTATCAAGATGTTTTAGCCAAgg > 1:288929/7‑99 (MQ=255)
cTTAAATGATGCTTCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCATTA‑AAAAA‑A‑ACAGTATCGTGATATTTTACGCAAggg > 2:2308480/1‑100 (MQ=255)
ttAAATGATGCTTCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCATTA‑AAAAA‑A‑ACAGTATCGTGATATTTTACGCaa < 1:2409809/96‑1 (MQ=255)
aaaTGATGCTTCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCATTA‑AAAAA‑A‑ACAGTATCGTGATATTTTACGCAAGGGTAg < 1:2316969/100‑1 (MQ=255)
aaaTGATGCTTCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCATTA‑AAAAA‑A‑ACAGTATCGTGATATTTTACGCAAGGGTAg > 1:2549699/1‑100 (MQ=255)
tgatgCTTCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCATTA‑AAAAA‑A‑ACAGTATCGTGATATTTTACGCAAGGGTAGccc < 1:2490556/100‑1 (MQ=255)
tgatgCTTCATACAGTCTTTATAAAAAGAATGAAACAGCATTTATTGTCTGTTCATCATTA‑AAAAA‑A‑ACAGTATCGTGATATTTTACGCAAGGGTAGccc > 1:1595311/1‑100 (MQ=255)
atgCTTCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCATTA‑AAAAA‑A‑ACAGTATCGTGATATTTTACGCAAGGGTAGccccc > 1:2558161/1‑100 (MQ=255)
tgCTTCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCATTA‑AAAAA‑A‑ACAGTATCGTGATATTTTACGCAAGGGTAGCCCCCa > 2:1348826/1‑100 (MQ=255)
gCTTCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCATTA‑AAAAA‑A‑ACAGTATTGTGATATTTTACGCAAGGGTAGCCCCCAt > 2:1282521/1‑100 (MQ=255)
gCTTCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCATTA‑AAAAA‑A‑ACAGTATCGTGATATTTTACGCAAGGGTAGCCCCCAt > 1:830349/1‑100 (MQ=255)
gCTTCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCATTA‑AAAAA‑A‑ACAGTATCGTGATATTTTACGCAAGGGTAGCCCCCAt > 2:91109/1‑100 (MQ=255)
cTTCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCATTA‑AAAAA‑A‑ACAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATg > 2:2167909/1‑100 (MQ=255)
ttCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCATTA‑AAAAA‑A‑ACAGTATCGTGATATTTTACGCAAGGGTAGCCACCATGt > 1:228121/1‑100 (MQ=255)
tCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCATTA‑AAAAA‑A‑ACAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATGtt < 1:1294863/100‑1 (MQ=255)
agaCAGGCTTTATAAAAAGAAGTAAACAGGATTTATTGTGTGTTCATCATTA‑AAAAA‑A‑ACAGTATCGTGATATTTTACTCGAGGGTAGCCCCCATGTTCa < 1:840577/98‑1 (MQ=255)
aTACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCATTA‑AAAAA‑A‑ACAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCa > 2:1506286/1‑100 (MQ=255)
aTACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTACAACAAAA‑AAAAA‑A‑ACAGGATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCa < 1:1387153/100‑1 (MQ=255)
aTACAGTATTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCATTAAAAAAA‑A‑ACAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATGtt < 2:1086356/99‑1 (MQ=255)
tACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCATTA‑AAAAA‑A‑ACAGTATCGTGATATTTTCCGCAAGGGTAGCACCCAt > 1:528628/1‑94 (MQ=255)
tACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCATTA‑AAAAA‑A‑ACAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCAt > 2:1518731/1‑100 (MQ=255)
tACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCATTA‑AAAAA‑A‑ACAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCAt > 2:852304/1‑100 (MQ=255)
aCAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTTTTCATCAATA‑AAAAA‑A‑ACAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCAtt < 1:1091786/100‑1 (MQ=255)
aGTCTTTATAAAAAGAATGAAGCAGGATTTATTGTCTGTTCATCATTA‑AAAAA‑A‑ACAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTc < 2:683857/100‑1 (MQ=255)
aGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCATTA‑AAAAA‑A‑ACAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTc < 2:1763608/100‑1 (MQ=255)
gTCTTTATAAAAAGAATAAAACAGGATTTATTGTCTGTTCAAAAATA‑AAAAA‑A‑ACAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTcc < 1:2085997/100‑1 (MQ=255)
gTCTTTATAAAAAGAAAGAAACAAGAGTCATTGTCTTTTCATCATTA‑AAAAA‑A‑ACAGAATCAATATATTTTACGCAAGGGTAGACCCCagattgtt > 1:2158585/1‑89 (MQ=255)
tCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCATTA‑AAAAA‑A‑ACAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTCct < 2:1595320/100‑1 (MQ=255)
tttATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCATTA‑AAAAA‑A‑ACAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTCctct < 2:562261/100‑1 (MQ=255)
tataAAAAGAATGAAACAGGATTTATTGTCTGTTCATCATTA‑AAAAA‑A‑ACAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTCCTCTgg > 2:713701/1‑100 (MQ=255)
tataAAAAGAATGAAACAGGATTTATTGTCTGTTCATCATT‑‑AAAAA‑A‑ACAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTCCTCTGGt < 1:443859/100‑1 (MQ=255)
ataAAAAGAATGAAACAGGATTTATTGTCTGTTCATCATTA‑AAAAA‑A‑ACAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTCCTCTGGt < 2:952981/100‑1 (MQ=255)
taAAAAGAATGAAACAGGATTTATTGTCTGTTCATCATTA‑AAAAA‑A‑ACAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTCCTCTGGtt < 2:1130894/100‑1 (MQ=255)
taAAAAGAATGAAACAGGATTTATTGTCTGTTCATCATTA‑AAAAA‑A‑ACAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTCCTCTGGtt < 2:1970958/100‑1 (MQ=255)
taAAAAGAATGAAACAGGATTTATTGTCTGTTCATCATTA‑AAAAA‑A‑ACAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTCCTCTGGtt < 1:2308466/100‑1 (MQ=255)
aaaaaGAATGAAACAGGATTTGTGGTCTGTTCATCATTA‑AAAAA‑A‑ACAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTCCTCTGGtt < 1:1886703/99‑1 (MQ=255)
aaaaaGAATGAAACAGGATTTATTGTCTGTTCATCATTA‑AAAAA‑A‑ACAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTCCTCTGGTTa < 2:685525/100‑1 (MQ=255)
aaaaaGAATGAAACAGGATTTATTGTCTGTTCATCATTA‑AAAAA‑A‑ACAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTCCTCTGGTTa < 2:907884/100‑1 (MQ=255)
aaaaaGAATGAAACAGGATTTATTGTCTGTTCATCATTA‑AAAAA‑A‑ACAGTATCGTGATATTTTACGCAAGGGTAGCCACCATGTTCATTTCCTCTGGTTa > 1:465377/1‑100 (MQ=255)
aaaaGAATGAAACAGGATTTATTGTCTGTTCATCATTA‑AAAAA‑A‑ACAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTCCTCTGGTTAg > 2:1839412/1‑100 (MQ=255)
aaaaGAATGAAACAGGATTTATTGTCTGTTCATCATTA‑AAAAA‑A‑ACAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTCCTCTGGTTAg > 1:1264796/1‑100 (MQ=255)
aaaGAATGAAACAGGATTTATTGTCTGTTCATCATTA‑AAAAA‑A‑ACAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTCCTCTGGTTAGa > 2:918182/1‑100 (MQ=255)
aaaGAATGAAACAGGATTTATTGTCTGTTCATCATTA‑AAAAA‑A‑ACAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTCCTCTGGTTAGa < 1:511914/100‑1 (MQ=255)
gAATGAAACAGGATTTATTGTCTGTTCATCATTA‑AAAAA‑A‑ACAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTCCTCTGGTTAGATgg > 1:474788/1‑100 (MQ=255)
gAATGAAACAGGATTTATTGTCTGTTCATCATTA‑AAAAA‑A‑ACAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTCCTCTGGTTAGATgg < 1:1518722/100‑1 (MQ=255)
gAATGAAACAGGATTTATTGTCTGTTCATCATT‑‑AAAAA‑A‑ACAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTCCTCTGGTTAGATGGc < 2:1475564/100‑1 (MQ=255)
aTGAAACAGGATTTATTGTCTGTTCATCATTA‑AAAAA‑A‑ACAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTCCTCTGGTTAGATGGCg > 2:2075109/1‑100 (MQ=255)
aTGAAACAGGATTTATTGTCTGTTAAAAAAAA‑AAAAA‑A‑ACAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTCCTCTGGTTAGATGGCg < 1:642631/100‑1 (MQ=255)
tGAAACAGGATTTATTGTCTGTTCATCATTA‑AAAAA‑A‑ACAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTCCTCTGGTTAGATGGCGa > 1:1795172/1‑100 (MQ=255)
gAAACAGGATTTATTGTCTGTTCATCATTA‑AAAAA‑A‑ACAGTATCGTGATATTTTTCGCAAGGGTAGCCCCCATGTTCATTTCACCTGGTTAGATg > 1:1152813/1‑95 (MQ=255)
aaCAGGATTTATTGTCTGTTCATCATTA‑AAAAA‑A‑ACAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTCCTCTGGTTAGATGGCGACt > 1:749361/1‑99 (MQ=255)
cAGGATTTATTGTCTGTTCATCATTA‑AAAAA‑A‑ACAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTCCTCTGGTTAGATGGCGACTATg < 1:1506277/100‑1 (MQ=255)
cAGGATTTATTGTCTGTTCATCATT‑‑AAAAAGA‑ACAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTCCTCTGGTTAGATGGCGACTATg > 1:2014006/1‑100 (MQ=255)
aGGATTTATTGTCTGATCATCATTA‑AAAAA‑A‑ACAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTCCTCTGGTTAGATGGCGACTATGa < 2:2558180/100‑1 (MQ=255)
aTTTATTGTCTGTTCATCATTA‑AAAAA‑A‑ACAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTCCTCTGGTTAGATGGCGACTATGAAAc < 2:2029002/100‑1 (MQ=255)
aTTTATTGTCTGTTCATCATTA‑AAAAA‑A‑ACAGTATCGTGATATGTTACGCAAGGGTAGCCCCCATGTTCATTTCCTCTGGTTAGATGGCGACTATGAAAc < 1:1655097/100‑1 (MQ=255)
tATTGTCTGTTCATCATTA‑AAAAA‑A‑ACAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTCCTCTGGTTAGATGGCGACTATGAAACTAt < 2:431746/100‑1 (MQ=255)
aTTGTCTGTTCATCATTA‑AAAAA‑A‑ACAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTCCTCTGGTTAGATGGCGACTATGAAACTAtt > 2:308731/1‑100 (MQ=255)
tGTCTGTTCATCATTA‑AAAAA‑A‑ACAGTATCTTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTCCTCTGGTTAGATGGCGACTATGAAACTATtct < 2:2451372/100‑1 (MQ=255)
gTCTGTTCATCATTA‑AAAAA‑A‑ACAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTCCTCTGGTTAGATGGCGACTATGAAACTATtctc > 1:2295047/1‑100 (MQ=255)
tCTGTTCATCATTA‑AAAAA‑A‑ACAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTCCTCTGGTTAGATGGCGACTATGAAACTATTCTcg > 1:2168488/1‑100 (MQ=255)
cTGTTCATCATTA‑AAAAA‑A‑ACAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTCCTCTGGTTAGATGGCGACTATGAAACTATTCTcgc > 2:1252790/1‑100 (MQ=255)
tGTTCATCATTA‑AAAAA‑A‑ACAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTCCTCTGGTTAGATGGCGACTATGAAACTATTCTcgcg > 2:1979966/1‑100 (MQ=255)
ttCATCATTC‑AAAAA‑A‑ACAGTATCGTGATATTTTACCCAAGGGTAGCCCCCATGTTCATTTCCTCTGGTTAGATGGCGACTATGAAACTATTCTcgcgcg < 2:116563/100‑1 (MQ=255)
ttCATCATT‑‑AAAAA‑A‑ACAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTTCTCTGGTTAGATGGCGACTATGAACCTATTCTcgcgcg < 1:1597975/99‑1 (MQ=255)
atcatTA‑AAAAA‑A‑ACAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTCCTCTGGTTAGATGGCGACTATGAAACTATTCTCGCGCGAAt < 2:2326699/100‑1 (MQ=255)
atT‑‑AAAAA‑A‑ACAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTCCTCTGGTTAGATGGCGACTATGAAACTATTCTCGCGCGAATGCAg > 1:1753703/1‑100 (MQ=255)
|
CTGATGAAGATCGACTTCCCTGGCTGGAACGCTTAAATGATGCTTCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCATT‑‑AAAAA‑A‑ACAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTCCTCTGGTTAGATGGCGACTATGAAACTATTCTCGCGCGAATGCAG > NC_000913/4494780‑4494973
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
