Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A4 F244 I1 R1
|
118 |
120.6 |
6073099 |
93.5% |
5678347 |
99.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
4,494,883 |
(A)7→8 |
coding (261/564 nt) |
idnK → |
D‑gluconate kinase, thermosensitive |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,494,876 | 1 | . | A | 92.6%
| 400.4
/ 22.5
| 121 | coding (254/564 nt) | idnK | D‑gluconate kinase, thermosensitive |
| Reads supporting (aligned to +/- strand): ref base . (5/4); new base A (57/55); total (62/59) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.99e-01 |
Only 100 of 141 total aligned reads displayed.
TATCTGATGAAGATCGACTTCCCTGGCTGGAACGCTTAAATGATGCTTCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCAT‑T‑‑‑AA‑AAA‑A‑ACAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTCCTCTGGTTAGATGGCGACTATGAAACTATTCTCGCGCGAATGCAGC > NC_000913/4494777‑4494974
|
tATCTGATGAAGATCGACTTCCCTGGCTGGAACGCTTAAATGATGCTTCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCAt‑t < 2:2988741/100‑1 (MQ=255)
cTGATGAAGATCGACTTCCCTGGCTGGAACGCTTAAATGATGCTTCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCAT‑T‑‑‑aa‑a > 2:1896966/1‑100 (MQ=255)
tgatgaAGATCGACTTCCCTGGCTGGAACGCTTAAATGATGCTTCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCAT‑T‑‑‑aa‑aa < 1:355971/100‑1 (MQ=255)
tgatgaAGATCGACTTCCCTGGCTGGAACGCTTAAATGATGCTTCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCAT‑T‑‑‑aa‑aa > 1:25189/1‑100 (MQ=255)
tgatgaAGATCGACTTCCCTGGCTGGAACGCTTAAATGATGCTTCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCAT‑T‑‑‑aa‑aa > 2:2305449/1‑100 (MQ=255)
tgaAGATCGACTTCCCTGGCTGGAACGCTTAAATGATGCTTCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCAT‑T‑‑‑aa‑aaa‑a‑a > 1:897537/1‑100 (MQ=255)
tgaAGATCGACTTCCCTGGCTGGAACGCTTAAATGATGCTTCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCAT‑T‑‑‑aa‑aaa‑a‑a > 2:726532/1‑100 (MQ=255)
gATCGACTTCCCTGGCTGGAACGCTTAAATGATGCTTCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCAT‑T‑‑‑aa‑aaa‑a‑aacag < 1:3006593/100‑5 (MQ=255)
gATCGACTTCCCTGGCTGGAACGCTTAAATGATGCTTCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCAT‑T‑‑‑aa‑aaa‑a‑aacag < 2:2212580/100‑5 (MQ=255)
tCGACTTCCCTGGCTGGAACGCTTAAATGATGCTTCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCAT‑TA‑‑AA‑AAA‑A‑ACAGTa > 1:3315/1‑100 (MQ=255)
aCTTCCCTGGCTGGAACGCTTAAATGATGCTTCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCAT‑TA‑‑AA‑AAA‑A‑ACAGTATCg > 1:2267761/1‑100 (MQ=255)
aCTTCCCTGGCTGGAACGCTTAAATGATGCTTCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCAT‑TA‑‑AA‑AAA‑A‑ACAGTATCg > 1:1253649/1‑100 (MQ=255)
aCTTCCCTGGCTGGAACGCTTAAATGATGCTTCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCAT‑TA‑‑AA‑AAA‑A‑ACAGTATCg < 1:2141442/100‑1 (MQ=255)
aCTTCCCTGGCTGGAACGCTTAAATGATGCTTCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCAT‑TA‑‑AA‑AAA‑A‑ACAGTATCg < 2:1835921/100‑1 (MQ=255)
cTTCCCTGGCTGGAACGCTTAAATGATGCTTCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCAT‑TA‑‑AA‑AAA‑A‑ACAGTATCGt < 2:2479777/100‑1 (MQ=255)
ttCCCTGGCTGGAACGCTTAAATGATGCTTCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCAT‑TA‑‑AA‑AAA‑A‑ACAGTATCGTg < 2:496125/100‑1 (MQ=255)
tCCCTGGCTGGAACGCTTAAATGATGCTTCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCAT‑TA‑‑AA‑AAA‑A‑ACAGTATCGTGa < 1:2907946/100‑1 (MQ=255)
cccTGGCTGGAACGCTTAAATGATGCTTCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCAT‑TA‑‑AA‑AAA‑A‑ACAGTATCGTGat > 2:1399016/1‑100 (MQ=255)
tggctggAACGCTTAAATGATGCTTCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCAT‑TA‑‑AA‑AAA‑A‑ACAGTATCGTGATAtt < 2:1970328/100‑1 (MQ=255)
ggctggAACGCTTAAATGATGCTTCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCAT‑TA‑‑AA‑AAA‑A‑ACAGTATCGTGATAttt < 2:1021441/100‑1 (MQ=255)
ggctggAACGCTTAAATGATGCTTCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCAT‑TA‑‑AA‑AAA‑A‑ACAGTATCGTGATAttt < 2:1307594/100‑1 (MQ=255)
ggctggAACGCTTAAATGATGCTTCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCAT‑TA‑‑AA‑AAA‑A‑ACAGTATCGTGATAttt > 2:1442297/1‑100 (MQ=255)
tggAACGCTTAAATGATGCTTCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCAT‑TA‑‑AA‑AAA‑A‑ACAGTATCGTGATATTTTa < 2:1216673/99‑1 (MQ=255)
tggAACGCTTAAATGATGCTTCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCAT‑TA‑‑AA‑AAA‑A‑ACAGTATCGTGATATTTTAc < 1:1379946/100‑1 (MQ=255)
ggAACGCTTAAATGATGCTTCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCAT‑TA‑‑AA‑AAA‑A‑ACAGTATCGTGATATTTTACg < 1:2825945/100‑1 (MQ=255)
cGCTTAAATGATGGTTCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCAT‑TA‑‑AA‑AAA‑A‑ACAGTATCGTGATATTTTACGCAAg > 2:1877587/1‑100 (MQ=255)
cGCTTAAATGATGCTTCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCAT‑TA‑‑AA‑AAA‑A‑ACAGTATCGTGATATTTTACGCAAg < 1:1352725/100‑1 (MQ=255)
gCTTAAATGATGCTTCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCAT‑TA‑‑AA‑AAA‑A‑ACAGTATCGTGATATTTTACGCAAgg > 1:2900262/1‑100 (MQ=255)
cTTAAATGATGCTTCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCAT‑TA‑‑AA‑AAA‑A‑ACAGTATCGTGATATTTTACGCAAggg < 1:30410/100‑1 (MQ=255)
cTTAAATGATGCTTCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCAT‑TA‑‑AA‑AAA‑A‑ACAGTATCGTGATATTTTACGCAAggg > 2:2545434/1‑100 (MQ=255)
cTTAAATGATGCTTCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCAT‑TA‑‑AA‑AAA‑A‑ACAGTATCGTGATATTTTACGCAAggg > 2:1056297/1‑100 (MQ=255)
cTTAAATGATGCTTCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCAT‑TA‑‑AA‑AAA‑A‑ACAGTATCGTGATATTTTACGCAAg > 2:2842446/1‑98 (MQ=255)
cTTAAATGATGCTTCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCAT‑T‑‑‑AA‑AAA‑A‑ACAGTATCGTGATATTTTACGCAAGGGt > 1:1539126/1‑100 (MQ=255)
ttAAATGATGCTTCATACAGTCTTTATAAAAAGAATGAAACAGTATTTATTGTCTGTTAATCAT‑T‑‑‑AA‑AAA‑ACACAGTATCCTGATAtttt > 2:2733594/1‑90 (MQ=255)
tAAATGATGCTTCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCATCA‑‑‑AA‑AAA‑A‑ACAGTATCGTGATATTTTACGCAAGGGTa > 1:97222/1‑100 (MQ=255)
tAAATGATGCTTCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCAT‑TA‑‑AA‑AAA‑A‑ACAGTATCGTGATATTTTACGCAAg > 2:1085217/1‑96 (MQ=255)
tAAATGATGCTTCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCAT‑TA‑‑AA‑AAA‑A‑ACAGTATCGTGATATTTTACGCAAGGGTa < 2:2221276/100‑1 (MQ=255)
tAAATGATGCTTCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCAT‑T‑‑‑AA‑AAA‑A‑ACAGTATCGTGATATTTTACGCAAGGGTAg > 2:111162/1‑100 (MQ=255)
tAAATGATCGTTCAGACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCAT‑TA‑‑AA‑AAA‑A‑ACAGTATCGTGATATTTTACGCAAGGGTa < 2:1796250/100‑1 (MQ=255)
aaaTGATGCTTCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCAT‑TA‑‑AA‑AAA‑A‑ACAGTATCGTGATATTTTACGCAAGGGTAg < 1:2968494/100‑1 (MQ=255)
gatgCTTCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCAT‑TA‑‑AA‑AAA‑A‑ACAGTATCGTGATATTTTACGCAAGGGTAGcccc < 1:1000845/100‑1 (MQ=255)
gatgCTTCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCAT‑TA‑‑AA‑AAA‑A‑ACAGTATCGTGATATTTTACGCAAGGGTAGccc > 1:123137/1‑99 (MQ=255)
gatgCTTCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCAT‑TA‑‑AA‑AAA‑A‑ACAGTATCGTGATATTTTACGCAAGGGTAGc > 2:3002645/1‑97 (MQ=255)
tgCTTCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCAT‑TA‑‑AA‑AAA‑A‑ACAGTATCGTGATATTTTACGCAAGGGTAGCCCCCa < 1:1442309/100‑1 (MQ=255)
tgCTTCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCAT‑TA‑‑AA‑AAA‑A‑ACAGTATCGTGATATTTTACGCAAGGGTAGCCCCCa < 2:2663176/100‑1 (MQ=255)
tgCTTCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCAT‑T‑‑‑AA‑AAA‑A‑ACAGTATCGTGATATTTTACGCAAGGGTAGCCCCCAt < 2:1539113/100‑1 (MQ=255)
tgCTTCATACAGTCCTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCAT‑TA‑‑AA‑AAA‑A‑ACAGTATCGTGATATTTTACGCAAGGGTAGCCCCCa < 1:794125/100‑1 (MQ=255)
gCTTCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCAT‑TA‑‑AA‑AAA‑A‑ACAGTATCGTGATATTTTACGCAAGGGTAGCCCCCAt > 2:869840/1‑100 (MQ=255)
cTTCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCAT‑TA‑‑AA‑AAA‑A‑ACAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATg > 1:294766/1‑100 (MQ=255)
tCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCAT‑TA‑‑AA‑AAA‑A‑ACAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATGtt < 1:2301003/100‑1 (MQ=255)
tACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCAT‑TA‑‑AA‑AAA‑A‑ACAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCAt > 1:2091566/1‑100 (MQ=255)
aCAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCAT‑TA‑‑AA‑AAA‑A‑ACAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCAtt > 1:2544121/1‑100 (MQ=255)
aCAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCAT‑TA‑‑AA‑AAA‑A‑ACAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCAtt > 2:2959092/1‑100 (MQ=255)
aCAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCAT‑TA‑‑AA‑AAA‑A‑ACAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCAtt > 2:610413/1‑100 (MQ=255)
gTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCAT‑TA‑‑AA‑AAA‑A‑ACAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTcc < 1:2695113/100‑1 (MQ=255)
gTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCAT‑TA‑‑AA‑AAA‑A‑ACAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTc > 2:724145/1‑99 (MQ=255)
tttATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCAT‑T‑‑‑AACAAA‑A‑ACAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTc > 2:961163/1‑96 (MQ=255)
ttATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCAT‑TA‑‑AA‑AAA‑A‑ACAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTCCTCTg < 2:1424832/100‑1 (MQ=255)
tataAAAAGAATGAAACAGGATTTATTGTCTGTTCATCAT‑TA‑‑AA‑AAA‑A‑ACAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTCCTCTgg < 2:1949713/100‑1 (MQ=255)
tataAAAAGAATGAAACAGGATTTATTGTCTGTTCATCAT‑TA‑‑AA‑AAA‑A‑ACAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTCCTCTgg > 2:196582/1‑100 (MQ=255)
taAAAAGAATGAAACAGGATTTATTGTCTGTTCATCAT‑TA‑‑AA‑AAA‑A‑ACAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTCCTCTGGtt < 2:867458/100‑1 (MQ=255)
taAAAAGAATGAAACAGGATTTATTGTCTGTTCATCAT‑TA‑‑AA‑AAA‑A‑ACAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTCCTCTGGtt < 1:1071444/100‑1 (MQ=255)
taAAAAGAATGAAACAGGATTTATTGTCTGTTCATCAT‑TA‑‑AA‑AAA‑A‑ACAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTCCTCTGGtt < 2:944638/100‑1 (MQ=255)
taAAAAGAATGAAACAGGATTTATTGTCTGTTCATCAT‑TA‑‑AA‑AAA‑A‑ACAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTCCTCTGGtt < 1:2115459/100‑1 (MQ=255)
taAAAAGAATGAAACAGGATTTATTGTCTGTTCATCAT‑TA‑‑AA‑AAA‑A‑ACAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTCCTCTGGtt > 2:1071434/1‑100 (MQ=255)
taAAAAGAATGAAACAGGATTTATTGTCTGTTCATCAT‑TA‑‑AA‑AAA‑A‑ACAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTCCTCTGGtt < 1:2017140/100‑1 (MQ=255)
taAAAAGAATGAAACAGGATATATTGTCTGTTCATCAT‑TA‑‑AA‑AAA‑A‑ACAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTCCTCTGGtt > 2:1858164/1‑100 (MQ=255)
taAAAAGAAGGAAACAGGATTTATTGTCTGTTCATAAA‑TA‑‑AA‑AAA‑A‑ACAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTCCTCTGGtt < 2:683790/100‑1 (MQ=255)
aaaaaGAATGAAACAGGATTTATTGTCTGTTCATCAT‑TA‑‑AA‑AAA‑A‑ACAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTCCTCTGGtt > 1:868317/1‑99 (MQ=255)
aaaaaGAATGAAACAGGATTTATTGTCTGTTCATCAT‑TA‑‑AA‑AAA‑A‑ACAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTCCTCTGGTTa > 2:2208261/1‑100 (MQ=255)
aaaaaGAATGAAACAGGATTTATTGTCTGTTCATCAT‑TA‑‑AA‑AAA‑A‑ACAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTCCTCTGGTTa < 1:724152/100‑1 (MQ=255)
aaaaaGAATGAAACAGGATTTATTGTCTGTTCATCAT‑TA‑‑AA‑AAA‑A‑ACAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTCCTCTGGTTa < 2:1385477/100‑1 (MQ=255)
aaaaaGAATGAAACAGGATTTATTGTCTGTTCATCAT‑TA‑‑AA‑AAA‑A‑ACAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTCCTCTGGTTa > 2:511370/1‑100 (MQ=255)
aGAATGAAACAGGATTTATTGTCTGTTCATCAT‑TA‑‑AA‑AAA‑A‑ACAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTCCTCTGGTTAGATg < 2:451245/100‑1 (MQ=255)
gAATGAAACAGGATTTATTGTCTGTTCATCAT‑TAA‑AA‑AAA‑A‑ACAGTATCGTGATATTTTACGCAAGTGTAGCCCCCATGTTCATTTCCTCTGGTTAGATg < 1:671806/100‑1 (MQ=255)
aTGAAACAGGATTTATTGTCTGTTCATCAT‑TA‑‑AA‑AAA‑A‑ACAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTCCTCTGGTTAGATGGCg < 1:1834512/100‑1 (MQ=255)
aTGAAACAGGATTTATTGTCTGTTCATCAT‑TA‑‑AA‑AAA‑A‑ACAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTCCTCTGGTTAGATGGCg < 1:151557/100‑1 (MQ=255)
tGAAACAGGATTTATTGTCTGTTCATCAT‑TA‑‑AA‑AAA‑A‑ACAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTCCTCTGGTTAGATGGCGa < 1:883771/100‑1 (MQ=255)
aaaCAGGATTTATTGTCTGTTCATCAT‑TA‑‑AA‑AAA‑A‑ACAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTCCTCTGGTTAGATGGCGACt > 1:3012421/1‑100 (MQ=255)
aaaCAGGATTTATTGTCTGTTCATCAT‑TA‑‑AA‑AAA‑A‑ACAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTCCTCTGGTTAGATGGCGACt < 1:44033/100‑1 (MQ=255)
aaaCAGGATTTATTGTCTGTTCATCAT‑TA‑‑AA‑AAA‑A‑ACAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTCCTCGGGTTAGATGGCGACt > 1:1039731/1‑100 (MQ=255)
aCAGGATTTATTGTCTGTTCATCAT‑TA‑‑AA‑AAA‑A‑ACAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTCCTCTGGTTAGATGGCGACTAt < 2:2091548/100‑1 (MQ=255)
aCAGGATTTATTGTCTGTTCATCAT‑TA‑‑AA‑AAA‑A‑ACAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTCCTCTGGTTAGATGGCGACTAt < 2:3315/100‑1 (MQ=255)
aCAGGATTTATTGTCTGTTCATCAT‑TA‑‑AA‑AAA‑A‑ACAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTCCTCTGGTTAGATGGCGACTAt < 1:560768/100‑1 (MQ=255)
cAGGATTTATTGTCTGTTCATCAT‑TAAAAA‑AAA‑A‑ACAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTCCTCTGGTTAGATGGCGa > 2:2188519/1‑97 (MQ=255)
cAGGATTTATTGTCTGTTCATCAT‑TA‑‑AA‑AAA‑A‑ACAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTCCTCTGGTTAGATGGCGACTATg < 1:1399028/100‑1 (MQ=255)
aGGATTTATTGTCTGTTCATCAT‑TA‑‑AA‑AAA‑A‑ACAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTCCTCTGGTTAGATGGCGACTATGa < 1:1708259/100‑1 (MQ=255)
aGGATTTATTGTCTGTTCATCAT‑T‑‑‑AA‑AAACA‑ACAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTCCTCTGGTTAGATGGCGACTATGa < 2:2450121/100‑1 (MQ=255)
ggATTTATTGTCTGTTCATCAT‑TA‑‑AA‑AAA‑A‑ACAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTCCTCTGGTTAGATGGCGACTATGaa > 2:2461017/1‑100 (MQ=255)
aattATTGTCTGTTCATCAT‑TA‑‑AA‑AAA‑A‑ACAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTCCTCTGGTTAGATGGCGACTATGAAAc > 1:2043910/3‑100 (MQ=255)
aTTTATTGTCTGTTCATCAT‑TA‑‑AA‑AAA‑A‑ACAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTCCTCTGGTTAGATGGCGACTATGAAAc > 2:1813459/1‑100 (MQ=255)
aTTTATTGTCTGTTCATCAT‑TA‑‑AA‑AAA‑A‑ACAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTCCTCTGGTTAGATGGCGACTATGAAAc < 2:2267741/100‑1 (MQ=255)
tATTGTCTGTTCATCAT‑TA‑‑AA‑AAA‑A‑ACAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTCCTCTGGTTAGATGGCGACTATGAAACTAt > 1:4613/1‑100 (MQ=255)
gTCTGTTCATCAT‑TA‑‑AA‑AAA‑A‑ACAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTCCTCTGGTTAGATGGCGACTATGAAACTATtctc > 2:1857245/1‑100 (MQ=255)
tCTGTTCATCAT‑TA‑‑AA‑AAA‑A‑ACAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTCCTCTGGTTAGATGGCGACTATGAAACTATTCTcg > 2:1126146/1‑100 (MQ=255)
gTTCATCAT‑TA‑‑AA‑AAA‑A‑ACAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTCCTCTGGTTAGATGGCGACTATGAAACTATTCTcgcgc > 2:418165/1‑100 (MQ=255)
gTTCATCAT‑TA‑‑AA‑AAA‑A‑ACAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTCCTCTGGTTAGATGGCGACTATGAAACTATTCTcgcgc > 1:332010/1‑100 (MQ=255)
gTTCATCAT‑TA‑‑AA‑AAA‑A‑ACAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTCCTCTGGTTAGATGGCGACTATGAAACTATTCTcgcgc > 2:2498979/1‑100 (MQ=255)
ttCATCAT‑TA‑‑AA‑AAA‑A‑ACAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTCCTCTGGTTAGATGGCGACTATGAAACTATTCTcgcgcg < 2:1335187/100‑1 (MQ=255)
t‑t‑‑‑AA‑AAA‑A‑ACAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTCCTCTGGTTAGATGGCGACTATGAAACTATTCTCGCGCGAATGCAGc > 1:2697838/1‑100 (MQ=255)
|
TATCTGATGAAGATCGACTTCCCTGGCTGGAACGCTTAAATGATGCTTCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCAT‑T‑‑‑AA‑AAA‑A‑ACAGTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTCCTCTGGTTAGATGGCGACTATGAAACTATTCTCGCGCGAATGCAGC > NC_000913/4494777‑4494974
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
