Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A16 F201 I0 R1
|
306 |
176.9 |
8831342 |
93.4% |
8248473 |
99.8 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NC_000913 |
4,494,883:1 |
(A)7→8 |
100% |
coding (261/564 nt) |
idnK → |
D‑gluconate kinase, thermosensitive |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,494,876 | 1 | . | A | 93.9%
| 496.5
/ 21.6
| 147 | coding (254/564 nt) | idnK | D‑gluconate kinase, thermosensitive |
| Reads supporting (aligned to +/- strand): ref base . (4/5); new base A (80/58); total (84/63) |
| Fisher's exact test for biased strand distribution p-value = 4.98e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 173 total aligned reads displayed.
TATCTGATGAAGATCGACTTCCCTGGCTGGAACGCTTAAATGATGCTTCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCATT‑‑A‑AAAA‑AA‑CA‑GTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTCCTCTGGTTAGATGGCGACTATGAAACTATTCTCGCGCG > NC_000913/4494777‑4494966
|
tATCTGATGAAGATCGACTTCCCTGGCTGGAACGCTTAAATGATGCTTCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCAtt < 1:1621519/100‑1 (MQ=255)
cTGATGAAGATCGACTTCCCTGGCTGGAACGCTTAAATGATGCTTCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCATT‑‑a‑aa > 1:1393658/1‑100 (MQ=255)
tgatgaAGATCGACTTCCCTGGCTGGAACGCTTAAATGATGCTTCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCATT‑‑a‑aaa < 2:3616762/100‑1 (MQ=255)
tgatgaAGATCGACTTCCCTGGCTGGAACGCTTAAATGATGCTTCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCATT‑‑a‑aaa > 1:1367908/1‑100 (MQ=255)
tgatgaAGATCGACTTCCCTGGCTGGAACGCTTAAATGATGCTTCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCATT‑‑a‑aaa > 1:455420/1‑100 (MQ=255)
atgaAGATCGACTTCCCTGGCTGGAACGCTTAAATGATGCTTCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCATT‑‑a‑aaaa‑a < 2:2606573/100‑1 (MQ=255)
tgaAGATCGACTTCCCTGGCTGGAACGCTTAAATGATGCTTCATACAGTCTTTATAAAAAGAATGCAACAGGATTTATTGTCTGTTCATCATT‑‑a‑aaaa > 1:4212451/1‑98 (MQ=255)
tgaAGATCGACTTCCCTGGCTGGAACGCTTAAATGATGCTTCATACAGTCTTTATAAAAAGAATGAAACCGGATTTATTGTCTGTTCATCATT‑‑a‑aaaa‑aa > 1:4198350/1‑100 (MQ=255)
tgaAGATCGACTTCCCTGGCTGGAACGCTTAAATGATGCTTCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCATT‑‑a‑aaaa‑aa > 2:3039795/1‑100 (MQ=255)
tgaAGATCGACTTCCCTGGCTGGAACGCTTAAATGATGCTTCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCATT‑‑a‑aaaa‑aa < 2:2059121/100‑1 (MQ=255)
tgaAGATCGACTTCCCTGGCTGGAACGCTTAAATGATGCTTCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCATT‑‑a‑aaaa‑aa > 2:1566301/1‑100 (MQ=255)
gaAGATCGACTTCCCTGGCTGGAACGCTTAAATGATGCTTCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCATT‑‑a‑aaaa‑aaa > 1:3434000/1‑99 (MQ=255)
aaGATCGACTTCCCTGGCTGGAACGCTTAAATGATGCTTCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCATT‑‑a‑aaaa‑aaac < 1:1673103/100‑3 (MQ=255)
gATCGACTTCCCTGGCTGGAACGCTTAAATGATGCTTCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCATT‑‑a‑aaaa‑aaacag > 2:923648/1‑96 (MQ=255)
gATCGACTTCCCTGGCTGGAACGCTTAAATGATGCTTCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCATT‑‑a‑aaaa‑aaacag > 2:1392349/1‑96 (MQ=255)
gATCGACTTCCCTGGCTGGAACGCTTAAATGATGCTTCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCATT‑‑A‑AAAA‑AA‑CA‑Gt > 1:2736245/1‑100 (MQ=255)
gACTTCCCTGGCTGGAACGCTTAAATGATGCTTCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCATTA‑A‑AAAA‑AA‑CA‑GTATc > 2:1714501/1‑100 (MQ=255)
gACTTCCCTGGCTGGAACGCTTAAATGATGCTTCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCATTA‑A‑AAAA‑AA‑CA‑GTATc > 2:4205217/1‑100 (MQ=255)
aCTTCCCTGGCTGGAACGCTTAAATGATGCTTCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCATTA‑A‑AAAA‑AA‑CA‑GTATCg > 2:3460666/1‑100 (MQ=255)
cTTCCCTGGCTGGAACGCTTAAATGATGCTTCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCATTA‑A‑AAAA‑AA‑CA‑GTATCGt < 2:2816107/100‑1 (MQ=255)
ctggAACGCTTAAATGATGCTTCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCATTA‑A‑AAAA‑AA‑CA‑GTATCGTGATATTTTa > 2:4177039/1‑100 (MQ=255)
tggAACGCTTAAATGATGCTTCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCATTA‑A‑AAAA‑AA‑CA‑GTATCGTGATATTTTAc < 2:628471/100‑1 (MQ=255)
ggAACGCTTAAATGATGCTTCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCATTA‑A‑AAAA‑AA‑CA‑GTATCGTGATATTTTACg < 2:2029939/100‑1 (MQ=255)
ggAACGATTAAATGATGCTTCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTTTGAAAAAAAAAA‑A‑AAAA‑AA‑CA‑GTATCGTGATATTTTAc < 1:2197134/99‑1 (MQ=255)
gAACGCTTAAATGATGCTTCATACAGTCTTTATAAAAAGAATGAAACAGGTTTTATTGTTTGTTCATCATT‑‑ATAAAA‑AA‑CA‑GTATAGTGTtttttt > 1:122545/1‑96 (MQ=255)
gAACGCTTAAATGATGCTTCATACAGTCTTCATCAAAAGAATGAAACAGGATTTATTGTCTGTTCATCATTA‑A‑AAAA‑AA‑CA‑GTATCGTGATATTTTACGc > 1:2903089/1‑100 (MQ=255)
gCTTAAATGATGCTTCATACAGTCTTTATAGAAGGAATGAAACAGGATTTATTGTCTGTTCATCATTA‑A‑AAAA‑AA‑CA‑GTATCGTGATATTTTACGCAAgg > 1:2898323/1‑100 (MQ=255)
gCTTAAATGATGCTTCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCATTA‑A‑AAAA‑AA‑CA‑GTATCGTGATATTTTACGCAAgg > 2:1568528/1‑100 (MQ=255)
cTTAAATGATGCTTCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCATTA‑A‑AAAA‑AA‑CA‑GTATCGTGATATTTTACGCaa > 1:322005/1‑97 (MQ=255)
cTTAAATGATGCTTCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCATTA‑A‑AAAA‑AA‑CA‑GTATCGTGATATTTTACGCAAggg > 1:1255953/1‑100 (MQ=255)
cTTAAATGATGCTTCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCATTA‑A‑AAAA‑AA‑CA‑GTATCGTGATATTTTACGCAAggg < 2:3673744/100‑1 (MQ=255)
tAAATGATGCTTCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCATTA‑A‑AAAA‑AA‑CA‑GTATCGTGATATTTTACGCAAGGGTa > 2:3394903/1‑100 (MQ=255)
aaaTGATGCTTCATACAGTCTTTATAAAAAGAATGAAGCAGGATTTATTGTCTGTTCATCATTA‑A‑AAAA‑AA‑CA‑GTATCGTGATATTTTACGCAAGGGTAg > 1:2358778/1‑100 (MQ=255)
aaaTGATGCTTCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCATTA‑A‑AAAA‑AA‑CA‑GTATCGTGATATTTTACGCAAGGGTa > 1:751678/1‑99 (MQ=255)
aaaTGATGCTTCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCATTA‑A‑AAAA‑AA‑CA‑GTATCGTGATATTTTACGCAAGGGTAg > 2:4316150/1‑100 (MQ=255)
aaTGATGCTTCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCATTA‑A‑AAAA‑AA‑CA‑GTATCGTGATATTTTACGGAAGGGTAGc > 2:3159157/1‑100 (MQ=255)
aaTGATGCTTCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCATTA‑A‑AAAA‑AA‑CA‑GTATCGTGATATTTTACGCAAGGGTAGc > 2:225756/1‑100 (MQ=255)
tgatgCTTCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCATTAAA‑AAAA‑AA‑CA‑GTATCGTGATATTTTACGCAAGGGTAGcc > 1:1179591/1‑100 (MQ=255)
tgatgCTTCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCATTAAA‑AAAA‑AA‑CA‑GTATCGTGATATTTTACGCAAGGGTAGcc > 2:1934500/1‑100 (MQ=255)
tgatgCTTCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCATTA‑A‑AAAA‑AA‑CA‑GTATCGTGATATTTTACGCAAGGGTAGccc > 2:731808/1‑100 (MQ=255)
tgatgCTTCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCATTA‑A‑AAAA‑AA‑CA‑GTATCGTGATATTTTACGCAAGGGTAGccc < 2:3434022/100‑1 (MQ=255)
gatgCTTCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCATTA‑A‑AAAA‑AA‑CA‑GTATCGTGATATTTTACGCAAGGGTAGcccc > 2:1903113/1‑100 (MQ=255)
gatgCTTCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCATTA‑A‑AAAA‑AA‑CA‑GTAGCGTGATATTTTACGCAAGGGTAGcccc < 2:1916082/100‑1 (MQ=255)
atgCTTCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCATTA‑A‑AAAA‑AA‑CA‑GTATCGTGATATTTTACGCAAGGGTAGccccc > 1:4353838/1‑100 (MQ=255)
atgCTTCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCATTA‑A‑AAAA‑AA‑CA‑GTATCGTGATATTTTACGCAAGGGTAGccccc > 2:1108965/1‑100 (MQ=255)
tgCTTCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCATTA‑A‑AAAA‑AA‑CA‑GTATCGTGATATTTTACGCAAGGGTAGCCCCCa < 2:1845171/100‑1 (MQ=255)
cTTCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCATTA‑A‑AAAA‑AA‑CA‑GTATCGTGATATTTTACGCAAGGGTAGCCCCCATg < 1:941622/100‑1 (MQ=255)
ttCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCATTA‑A‑AAAA‑AA‑CA‑GTATCGTGATATTTTACGCAAGGGTAGCCCCCATGt < 2:1531347/100‑1 (MQ=255)
cATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCATTA‑A‑AAAA‑AA‑CA‑GTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTc < 1:1732931/100‑1 (MQ=255)
tagaGTCTTTATAAAAAGAATGAAACAGGATTTATTGTTTGTTCATTATTA‑A‑AAAA‑AA‑CA‑GTATTGTGATATTTTACGTAAGGGTAGCGCCCATGTTCAt > 1:3670098/4‑100 (MQ=255)
tACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCATTA‑A‑AAAA‑AA‑CA‑GTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCAt > 1:2386816/1‑100 (MQ=255)
tACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCATTA‑A‑AAAA‑AA‑CA‑GTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCAt > 2:2924572/1‑100 (MQ=255)
aCAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCATTA‑A‑AAAA‑AA‑CA‑GTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCAtt > 1:960784/1‑100 (MQ=255)
cAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCATTA‑A‑AAAA‑AA‑CA‑GTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCAttt < 2:1005684/100‑1 (MQ=255)
cAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCATTA‑A‑AAAA‑AA‑CA‑GTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCAttt > 2:3085512/1‑100 (MQ=255)
cAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCATTA‑A‑AAAA‑AA‑CA‑GTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCAttt < 1:3178824/100‑1 (MQ=255)
gTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCATTA‑A‑AAAA‑AA‑CA‑GTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTcc < 2:1002188/100‑1 (MQ=255)
ntttATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCATTA‑A‑AAAA‑AA‑CA‑GTGTCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTCctc > 1:2815751/2‑100 (MQ=255)
cTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCATTA‑A‑AAAA‑AA‑CA‑GTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTCctc < 1:503894/100‑1 (MQ=255)
tataAAAAGAATGAAACAGGATTTATTGTCTGTTCATCATTA‑A‑AAAA‑AA‑CA‑GTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTCCTCTgg > 1:551682/1‑100 (MQ=255)
tataAAAAGAATGAAACAGGATTTATTGTCTGTTCATCATTA‑A‑AAAA‑AA‑CA‑GTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTCCTCTgg < 2:3947970/100‑1 (MQ=255)
aaaaaaaGAATGAAACAGGATTTATTGTCTGTTCATCATTA‑A‑AAAA‑AA‑CA‑GTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTCCTCTGGt < 1:2117240/98‑1 (MQ=255)
taAAAAGAATGAAACAGGATTTATTGTCTGTTCATCATTA‑A‑AAAA‑AA‑CA‑GTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTCCTCTGGtt < 2:2815768/100‑1 (MQ=255)
taAAAAGAATGAAACAGGATTTATTGTCTGTTCATCATTA‑A‑AAAA‑AA‑CA‑GTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTCCTCTGGt > 2:3981925/1‑99 (MQ=255)
aaaaaGAATGAAACAGGATTTATTGTCTGTTCATCATTA‑A‑AAAA‑AA‑CA‑GTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTCCTCTGGTTa > 1:666551/1‑100 (MQ=255)
aaaaaGAATGAAACAGGATTTATTGTCTGTTCATCATTA‑A‑AAAA‑AA‑CA‑GTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTCCTCTGGTTa > 1:2021400/1‑100 (MQ=255)
aaaaGAATGAAACAGGATTTATTGTCTGTTCATCATTA‑A‑AAAA‑AA‑CA‑GTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTCCTCTGGTTAg < 1:2010369/100‑1 (MQ=255)
aaaaGAATGAAACAGGATTTATTGTCTGTTCATCATTA‑A‑AAAA‑AA‑CA‑GTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTCCTCTGGTTAg > 1:2524216/1‑100 (MQ=255)
aaaaGAATGAAACAGGATTTATTGTCTGTTCATCATTA‑A‑AAAA‑AA‑CA‑GTATCGTGATATTTTACGCAAGGGTAGCACCCATGTTCATTTCCTCTGGTTAg > 1:311538/1‑100 (MQ=255)
aaaGAATGAAACAGGATTTATTGTCTGTTCATCATTA‑A‑AAAA‑AA‑CA‑GTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTCCTCTGGTTAGa < 1:4044384/100‑1 (MQ=255)
aaTGAAACAGGATTTATTGTCTGTTCATCATTA‑A‑AAAA‑AA‑CA‑GTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTCCTCTGGTTAGATGGc < 2:868452/100‑1 (MQ=255)
attaaaCAGGATTTATTGTCTGTGAATCATT‑‑ACAAAA‑AA‑CA‑GTATCGTGATATTTTACGCAATGGTAGCCCCCATGTTCATTTCCTCTGGTTAGATGGCg < 1:1066990/97‑1 (MQ=255)
aTGAAACAGGATTTATTGTCTGTTCATCATTA‑A‑AAAA‑AA‑CA‑GTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTCCTCTGGTTAGATGGCg > 1:3766007/1‑100 (MQ=255)
tGAAACAGGATTTATTGTCTGTTCATCATTA‑A‑AAAA‑AA‑CA‑GTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTCCTCTGGTTAGATGGCGa < 2:286158/100‑1 (MQ=255)
gAAACAGGATTTATTGTCTGTTCATCATTA‑A‑AAAA‑AA‑CA‑GTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTCCTCTGGTTAGATGGCGAc < 2:4195969/100‑1 (MQ=255)
gAAACAGGATTTATTGTCTGTTCATCATTA‑A‑AAAA‑AA‑CA‑GTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTCCTCTGGTTAGATGGCGAc < 2:1062079/100‑1 (MQ=255)
aaCAGGATTTATTGTCTGTTCATCATTA‑A‑AAAA‑AA‑CA‑GTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTCCTCTGGTTAGATGGCGACTa < 1:3039777/100‑1 (MQ=255)
aCAGGATTTATTGTCTGTTCATCATTA‑A‑AAAA‑AA‑CA‑GTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTCCTCTGGTTAGATGGCGACTAt < 1:821544/100‑1 (MQ=255)
cAGGATTTATTGTCTGTTCATCATTA‑A‑AAAA‑AA‑CA‑GTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTCCTCTGGTTAGATGGCGACTATg < 2:2343854/100‑1 (MQ=255)
cAGGATTTATTGTCTGTTCATCATTA‑A‑AAAA‑AA‑CA‑GTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTCCTCTGGTTAGATGGCGACTATg < 1:3251463/100‑1 (MQ=255)
aGGATTTATTGTCTGTTCATCATTA‑A‑AAAA‑AA‑CA‑GTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTCCTCTGGTTAGATGGCGACTATGa < 2:3375252/100‑1 (MQ=255)
aGGATTTATTGTCTGTTCATCATTA‑A‑AAAA‑AA‑CA‑GTATCGTGATATTTTACGCAAGGGTAACCCCCATGTTCATTTCCTCTGGTTAGATGGCGACTATGa > 1:1109651/1‑100 (MQ=255)
aGGATTTATTGTCTGTTCATCATT‑‑A‑AAAA‑AA‑CA‑GTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTCCTCTGGTTAGATGGCGACTATGaa < 2:219828/100‑1 (MQ=255)
ggATTTATTGTCTGTTCATCATTA‑A‑AAAA‑AA‑CA‑GTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTCCTCTGGTTAGATGGCGACTATGan < 1:3416895/100‑2 (MQ=255)
ggATTTATTGTCTGTTCATCATTA‑A‑AAAA‑AA‑CA‑GTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTCCTCTGGTTAGATGGCGACTATGaa < 2:3529756/100‑1 (MQ=255)
gATTTATTGTCTGTTCATCATTA‑A‑AAAA‑AA‑CA‑GTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTCCTCTGGTTAGATGGCGACTATGaaa > 1:3489345/1‑100 (MQ=255)
gATTTATTGTCTGTTCATCATT‑‑A‑AAAA‑AA‑AATGTATCGTGGTATTTTACGCATGGGTAGCCACCATGTTCCTTTCTTTTTGTTAGTTGTAGACTATGaga > 1:1034391/1‑98 (MQ=255)
aTTTATTGTCTGTTCATCATTA‑A‑AAAA‑AA‑CA‑GTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTCCTCTGGTTAGATGGCGACTATGAAAc < 1:3593398/100‑1 (MQ=255)
aTTTATTGTCTGTTCATCATTA‑A‑AAAA‑AA‑CA‑GTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTCCTCTGGTTAGATGGCGACTATGAAAc < 2:3726584/100‑1 (MQ=255)
ttATTGTCTGTTCATCATTA‑A‑AAAA‑AA‑CA‑GTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTCCTCTGGTTAGATGGCGACTATGAAACTa < 2:2268474/100‑1 (MQ=255)
ttATTGTCTGTTCATCATTA‑A‑AAAA‑AA‑CA‑GTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTCCTCTGGTTAGATGGCGACTATGAAACTa < 2:3003116/100‑1 (MQ=255)
tgaTTGTTTGTTCATCATT‑‑A‑AAAA‑AAGCA‑GTACCGTGATATTTTACGCAAGGGTTGCCCCCATGTTCATTTCCTCTGGTTAGATGGCGACTATGAAAc < 1:1494874/96‑1 (MQ=255)
aTTGTCTGTTCATCATTA‑A‑AAAA‑AA‑CA‑GTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTCCTCTGGTTAGATGGCGACTATGAAACTAt > 2:2107861/1‑99 (MQ=255)
tGTCTGTTCATCATTA‑A‑AAAA‑AA‑CA‑GTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTCCTCTGGTTAGATGGCGACTATGAAACTATtct < 2:3161517/100‑1 (MQ=255)
gTCTGTTCATCATTA‑A‑AAAA‑AA‑CA‑GTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTCCTCTGGTTAGATGGCGACTATGAAACTATtctc < 2:3766033/100‑1 (MQ=255)
gTCTGTTCATCATTA‑A‑AAAA‑AA‑CA‑GTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTCCTCTGGTTAGATGGCGACTATGAAACTATtctc > 2:4096769/1‑100 (MQ=255)
tCTGTTCATCATTA‑A‑AAAA‑AA‑CA‑GTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTATATTTCCTCTGGTTAGATGGCGACTATGAAACTATTCTcg > 1:3898754/1‑100 (MQ=255)
tGTTCATCATTA‑A‑AAAA‑AA‑CA‑GTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTCCTCTGGTTAGATGGCGACTATGAAACTATTCTcgcg > 2:3939239/1‑100 (MQ=255)
ttCATCATTA‑A‑AAAA‑AA‑CA‑GTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTCCTCTGGTTAGATGGCGACTATGAAACTATTCTcgcgcg > 2:1250557/1‑100 (MQ=255)
ttCATCAAT‑‑A‑AAAAGTA‑CA‑GGATCGTTATAGTTTTCGCAAGGGGAGCCTCCATGCTCGTTTCCTCTGGTTAGATGGCGACTATGAAACTATTCTcgcgc < 1:1535139/99‑1 (MQ=255)
|
TATCTGATGAAGATCGACTTCCCTGGCTGGAACGCTTAAATGATGCTTCATACAGTCTTTATAAAAAGAATGAAACAGGATTTATTGTCTGTTCATCATT‑‑A‑AAAA‑AA‑CA‑GTATCGTGATATTTTACGCAAGGGTAGCCCCCATGTTCATTTCCTCTGGTTAGATGGCGACTATGAAACTATTCTCGCGCG > NC_000913/4494777‑4494966
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
