breseq  version 0.35.4  revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Predicted mutations
evidence position mutation annotation gene description
RA 49,884 C→A P21Q (CCG→CAG)  folA → type 3 dihydrofolate reductase
RA 1,184,613 A→T I207N (ATC→AAC)  phoQ ← two‑component system sensor histidine kinase PhoQ
RA 1,613,383 Δ1 bp coding (7/435 nt) marR → multiple antibiotic resistance transcriptional regulator MarR
RA 1,743,316 T→G V167V (GTA→GTC)  ydhT ← protein YdhT
MC JC 2,399,465 Δ7 bp coding (650‑656/939 nt) lrhA ← transcriptional regulator LrhA
RA 2,851,887 G→A R479H (CGT→CAT)  mutS → DNA mismatch repair protein MutS
RA 2,860,429 T→G Q161P (CAA→CCA)  rpoS ← RNA polymerase sigma factor RpoS

Unassigned missing coverage evidence
   seq id start end size ←reads reads→ gene description
* * ÷ NZ_CP009273 28471 28488 18 2 [1] [1] 2 dapB 4‑hydroxy‑tetrahydrodipicolinate reductase
* * ÷ NZ_CP009273 80475 80558 84 2 [1] [1] 2 leuL/leuO leu operon leader peptide/transcriptional regulator LeuO
* * ÷ NZ_CP009273 122295 122335 41 2 [1] [1] 2 aceF pyruvate dehydrogenase complex dihydrolipoyllysine‑residue acetyltransferase
* * ÷ NZ_CP009273 141831 141864 34 3 [1] [1] 3 yadE polysaccharide deacetylase family protein
* * ÷ NZ_CP009273 234727 234775 49 2 [1] [1] 2 [BW25113_RS01095] [BW25113_RS01095]
* * ÷ NZ_CP009273 246006 246082 77 2 [1] [1] 3 BW25113_RS01160 flagellar biosynthesis protein FlhA
* * ÷ NZ_CP009273 255180 255194 15 3 [1] [1] 4 phoE phosphoporin PhoE
* * ÷ NZ_CP009273 356981 357583 603 2 [0] [1] 2 [lacA] [lacA]
* * ÷ NZ_CP009273 459924 459967 44 3 [1] [1] 3 fadM long‑chain acyl‑CoA thioesterase FadM
* * ÷ NZ_CP009273 483894 483907 14 2 [1] [1] 2 mscK mechanosensitive channel MscK
* * ÷ NZ_CP009273 505402 505422 21 3 [1] [1] 3 copA copper‑exporting P‑type ATPase CopA
* * ÷ NZ_CP009273 517911 517931 21 2 [1] [1] 3 ybbP ABC transporter permease
* * ÷ NZ_CP009273 518494 518534 41 2 [1] [1] 2 ybbP/rhsD ABC transporter permease/rhs element protein RhsD
* * ÷ NZ_CP009273 519420 519441 22 2 [1] [0] 2 rhsD rhs element protein RhsD
* * ÷ NZ_CP009273 533187 533215 29 2 [1] [1] 5 ybbW putative allantoin permease
* * ÷ NZ_CP009273 541977 542050 74 2 [1] [1] 2 allD/fdrA ureidoglycolate dehydrogenase/acyl‑CoA synthetase FdrA
* * ÷ NZ_CP009273 572509 572513 5 2 [0] [1] 2 BW25113_RS02855/essD porin/phage lysis protein EssD
* * ÷ NZ_CP009273 578728 578812 85 2 [1] [1] 2 BW25113_RS26085/appY tail fiber assembly protein/DNA‑binding transcriptional activator AppY
* * ÷ NZ_CP009273 579909 579927 19 2 [1] [0] 3 appY/ompT DNA‑binding transcriptional activator AppY/omptin family outer membrane protease OmpT
* * ÷ NZ_CP009273 583115 583185 71 2 [1] [1] 2 ybcH DUF4434 family protein
* * ÷ NZ_CP009273 584829 584846 18 5 [0] [1] 3 nfrA bacteriophage adsorption protein NfrA
* * ÷ NZ_CP009273 623920 623930 11 2 [1] [0] 2 entB enterobactin biosynthesis bifunctional isochorismatase/aryl carrier protein EntB
* * ÷ NZ_CP009273 633292 633311 20 2 [1] [1] 2 dsbG thiol:disulfide interchange protein DsbG
* * ÷ NZ_CP009273 647494 647535 42 2 [1] [1] 2 citC/dpiB [citrate (pro‑3S)‑lyase] ligase/sensor histidine kinase DpiB
* * ÷ NZ_CP009273 651722 651758 37 2 [0] [1] 2 dcuC/pagP anaerobic C4‑dicarboxylate transporter DcuC/lipid IV(A) palmitoyltransferase PagP
* * ÷ NZ_CP009273 654398 654424 27 2 [1] [1] 2 [tatE] [tatE]
* * ÷ NZ_CP009273 666408 666451 44 2 [1] [1] 4 holA DNA polymerase III subunit delta
* * ÷ NZ_CP009273 674838 674951 114 2 [1] [1] 2 [ybeT] [ybeT]
* * ÷ NZ_CP009273 690030 690040 11 3 [0] [1] 3 miaB tRNA (N6‑isopentenyl adenosine(37)‑C2)‑methylthiotransferase MiaB
* * ÷ NZ_CP009273 703451 703511 61 2 [0] [1] 2 glnS/chiP glutamine‑‑tRNA ligase/chitoporin
* * ÷ NZ_CP009273 710616 710650 35 2 [1] [1] 2 pgm phosphoglucomutase (alpha‑D‑glucose‑1,6‑bisphosphate‑dependent)
* * ÷ NZ_CP009273 718755 718782 28 3 [1] [1] 3 kdpD two‑component system sensor histidine kinase KdpD
* * ÷ NZ_CP009273 718880 718934 55 2 [1] [1] 2 kdpD two‑component system sensor histidine kinase KdpD
* * ÷ NZ_CP009273 724755 724770 16 2 [1] [1] 2 ybfA YbfA family protein
* * ÷ NZ_CP009273 724885 724936 52 2 [1] [1] 2 ybfA/rhsC YbfA family protein/rhs element protein RhsC
* * ÷ NZ_CP009273 726271 726313 43 2 [1] [1] 2 rhsC rhs element protein RhsC
* * ÷ NZ_CP009273 729528 729583 56 2 [1] [1] 3 [BW25113_RS03630] [BW25113_RS03630]
* * ÷ NZ_CP009273 747543 747605 63 2 [1] [1] 2 ybgQ fimbrial biogenesis outer membrane usher protein
* * ÷ NZ_CP009273 766493 766585 93 2 [1] [1] 2 mngB/cydA mannosylglycerate hydrolase/cytochrome ubiquinol oxidase subunit I
* * ÷ NZ_CP009273 772577 772711 135 3 [1] [0] 3 tolA cell envelope integrity protein TolA
* * ÷ NZ_CP009273 818987 819039 53 3 [1] [1] 2 clsB cardiolipin synthase ClsB
* * ÷ NZ_CP009273 827543 827602 60 2 [1] [1] 2 rhlE ATP‑dependent RNA helicase RhlE
* * ÷ NZ_CP009273 860354 860364 11 3 [1] [1] 3 moeB molybdopterin‑synthase adenylyltransferase MoeB
* * ÷ NZ_CP009273 865416 865426 11 2 [0] [0] 3 gsiB glutathione ABC transporter substrate‑binding protein GsiB
* * ÷ NZ_CP009273 892839 892855 17 2 [0] [0] 2 potI putrescine ABC transporter permease PotI
* * ÷ NZ_CP009273 893936 893948 13 2 [0] [1] 2 ybjO/rlmC YbjO family protein/23S rRNA (uracil(747)‑C(5))‑methyltransferase RlmC
* * ÷ NZ_CP009273 902963 903063 101 2 [1] [1] 3 ybjT SDR family oxidoreductase
* * ÷ NZ_CP009273 906676 906676 1 3 [0] [0] 2 hcr NADH oxidoreductase
* * ÷ NZ_CP009273 917703 917735 33 2 [1] [1] 2 macB macrolide ABC transporter ATP‑binding protein/permease MacB
* * ÷ NZ_CP009273 925272 925374 103 3 [0] [0] 2 cydD cysteine/glutathione ABC transporter permease/ATP‑binding protein CydD
* * ÷ NZ_CP009273 930859 930898 40 2 [1] [1] 3 ftsK DNA translocase FtsK
* * ÷ NZ_CP009273 936961 937022 62 3 [1] [1] 2 dmsA dimethylsulfoxide reductase subunit A
* * ÷ NZ_CP009273 940124 940177 54 3 [1] [1] 4 dmsC dimethyl sulfoxide reductase anchor subunit DmsC
* * ÷ NZ_CP009273 982567 982617 51 2 [1] [1] 2 ompF/asnS porin OmpF/asparagine‑‑tRNA ligase
* * ÷ NZ_CP009273 982708 982787 80 2 [1] [0] 2 ompF/asnS porin OmpF/asparagine‑‑tRNA ligase
* * ÷ NZ_CP009273 992026 992061 36 2 [0] [1] 2 ssuA aliphatic sulfonate ABC transporter substrate‑binding protein SsuA
* * ÷ NZ_CP009273 993108 993171 64 2 [1] [1] 2 ssuE/elfA NADPH‑dependent FMN reductase/fimbrial protein
* * ÷ NZ_CP009273 1000045 1000075 31 2 [1] [1] 2 ycbF fimbrial chaperone
* * ÷ NZ_CP009273 1032441 1032486 46 2 [1] [1] 2 hyaF hydrogenase expression/formation protein
* * ÷ NZ_CP009273 1044403 1044440 38 2 [1] [1] 2 gfcB lipoprotein GfcB
* * ÷ NZ_CP009273 1054268 1054318 51 2 [1] [1] 2 torC pentaheme c‑type cytochrome TorC
* * ÷ NZ_CP009273 1080339 1080364 26 2 [0] [1] 3 efeB/phoH iron uptake transporter deferrochelatase/peroxidase subunit/phosphate starvation‑inducible protein PhoH
* * ÷ NZ_CP009273 1091643 1091676 34 2 [1] [0] 2 BW25113_RS05360 hypothetical protein
* * ÷ NZ_CP009273 1099264 1099314 51 2 [1] [1] 2 csgD/csgB biofilm master transcriptional regulator CsgD/curli minor subunit CsgB
* * ÷ NZ_CP009273 1111803 1111815 13 2 [1] [1] 3 lpxL kdo(2)‑lipid IV(A) lauroyltransferase
* * ÷ NZ_CP009273 1113482 1113496 15 2 [1] [0] 2 yceI YceI family protein
* * ÷ NZ_CP009273 1114609 1114628 20 2 [1] [0] 2 yceJ/BW25113_RS05515 cytochrome b/YceO family protein
* * ÷ NZ_CP009273 1120350 1120350 1 4 [0] [0] 2 mdtH multidrug efflux MFS transporter MdtH
* * ÷ NZ_CP009273 1137471 1137515 45 2 [1] [1] 2 rne ribonuclease E
* * ÷ NZ_CP009273 1144704 1144773 70 2 [1] [1] 3 fabH beta‑ketoacyl‑ACP synthase III
* * ÷ NZ_CP009273 1153024 1153110 87 2 [1] [1] 3 [ycfH] [ycfH]
* * ÷ NZ_CP009273 1164370 1164432 63 2 [1] [1] 2 comR/bhsA TetR family copper‑responsive transcriptional repressor ComR/multiple stress resistance protein BhsA
* * ÷ NZ_CP009273 1164826 1164897 72 2 [1] [1] 4 [ldtC] [ldtC]
* * ÷ NZ_CP009273 1168071 1168103 33 2 [1] [0] 2 mfd transcription‑repair coupling factor
* * ÷ NZ_CP009273 1172393 1172447 55 2 [1] [1] 2 lolD lipoprotein‑releasing ABC transporter ATP‑binding protein LolD
* * ÷ NZ_CP009273 1172572 1172576 5 2 [1] [1] 2 lolD lipoprotein‑releasing ABC transporter ATP‑binding protein LolD
* * ÷ NZ_CP009273 1180063 1180077 15 2 [1] [1] 2 potA spermidine/putrescine ABC transporter ATP‑binding protein PotA
* * ÷ NZ_CP009273 1187114 1187246 133 2 [1] [1] 2 purB adenylosuccinate lyase
* * ÷ NZ_CP009273 1188065 1188089 25 2 [0] [0] 2 [hflD] [hflD]
* * ÷ NZ_CP009273 1192733 1192793 61 2 [1] [1] 2 ymfD class I SAM‑dependent methyltransferase
* * ÷ NZ_CP009273 1193092 1193257 166 2 [1] [1] 2 BW25113_RS05920 hypothetical protein
* * ÷ NZ_CP009273 1194311 1194343 33 3 [1] [1] 2 lit cell death peptidase Lit
* * ÷ NZ_CP009273 1205062 1205074 13 2 [0] [0] 7 BW25113_RS06005 phage tail protein
* * ÷ NZ_CP009273 1207525 1207549 25 2 [1] [1] 2 iraM/BW25113_RS25985 anti‑adapter protein IraM/protein YmgK
* * ÷ NZ_CP009273 1207731 1207769 39 2 [0] [1] 2 [BW25113_RS25985] [BW25113_RS25985]
* * ÷ NZ_CP009273 1208177 1208196 20 2 [1] [1] 2 ycgX DUF1398 domain‑containing protein
* * ÷ NZ_CP009273 1214912 1214982 71 2 [0] [1] 2 BW25113_RS06070/BW25113_RS25990 hypothetical protein/autotransporter outer membrane beta‑barrel domain‑containing protein
* * ÷ NZ_CP009273 1218639 1218721 83 2 [1] [1] 2 [BW25113_RS23645] [BW25113_RS23645]
* * ÷ NZ_CP009273 1219328 1219353 26 2 [1] [1] 2 BW25113_RS06105 autotransporter outer membrane beta‑barrel domain‑containing protein
* * ÷ NZ_CP009273 1225958 1226025 68 2 [1] [1] 2 hlyE/umuD hemolysin HlyE/translesion error‑prone DNA polymerase V autoproteolytic subunit
* * ÷ NZ_CP009273 1233669 1233746 78 2 [1] [1] 2 dadA D‑amino acid dehydrogenase
* * ÷ NZ_CP009273 1237774 1237820 47 2 [1] [0] 2 ldcA muramoyltetrapeptide carboxypeptidase
* * ÷ NZ_CP009273 1239200 1239246 47 2 [1] [1] 2 emtA membrane‑bound lytic murein transglycosylase EmtA
* * ÷ NZ_CP009273 1239465 1239552 88 2 [1] [1] 2 ycgR flagellar brake protein
* * ÷ NZ_CP009273 1240252 1240264 13 2 [1] [1] 3 ymgE GlsB/YeaQ/YmgE family stress response membrane protein
* * ÷ NZ_CP009273 1243608 1243611 4 2 [1] [0] 3 dhaM dihydroxyacetone kinase phosphoryl donor subunit DhaM
* * ÷ NZ_CP009273 1251606 1251738 133 2 [1] [1] 2 ycgV/ychF autotransporter outer membrane beta‑barrel domain‑containing protein/redox‑regulated ATPase YchF
* * ÷ NZ_CP009273 1261275 1261343 69 2 [1] [1] 2 prfA peptide chain release factor 1
* * ÷ NZ_CP009273 1269760 1269788 29 2 [1] [1] 2 ychO inverse autotransporter invasin YchO
* * ÷ NZ_CP009273 1274916 1274962 47 6 [1] [1] 2 narK/narG nitrate transporter NarK/nitrate reductase subunit alpha
* * ÷ NZ_CP009273 1275107 1275125 19 2 [0] [1] 4 narK/narG nitrate transporter NarK/nitrate reductase subunit alpha
* * ÷ NZ_CP009273 1277700 1277776 77 3 [1] [1] 3 narG nitrate reductase subunit alpha
* * ÷ NZ_CP009273 1300391 1300420 30 2 [1] [1] 2 oppF murein tripeptide/oligopeptide ABC transporter ATP‑binding protein OppF
* * ÷ NZ_CP009273 1306817 1306832 16 2 [0] [0] 2 yciB septation protein A
* * ÷ NZ_CP009273 1340804 1340869 66 3 [1] [1] 2 pdeR cyclic di‑GMP phosphodiesterase
* * ÷ NZ_CP009273 1353031 1353067 37 2 [1] [1] 2 puuP putrescine/proton symporter PuuP
* * ÷ NZ_CP009273 1357404 1357413 10 2 [1] [0] 2 puuC aldehyde dehydrogenase PuuC
* * ÷ NZ_CP009273 1360480 1360510 31 2 [1] [1] 3 puuE 4‑aminobutyrate transaminase
* * ÷ NZ_CP009273 1372296 1372342 47 2 [1] [0] 2 ycjT kojibiose phosphorylase
* * ÷ NZ_CP009273 1377834 1377846 13 2 [1] [0] 2 ycjW LacI family DNA‑binding transcriptional regulator
* * ÷ NZ_CP009273 1378534 1378542 9 2 [0] [1] 2 ycjX YcjX family protein
* * ÷ NZ_CP009273 1387331 1387420 90 2 [1] [1] 3 pgrR/mppA DNA‑binding transcriptional regulator PgrR/murein tripeptide ABC transporter substrate‑binding protein MppA
* * ÷ NZ_CP009273 1400111 1400214 104 2 [1] [1] 2 abgR/smrA LysR family transcriptional regulator/DNA endonuclease SmrA
* * ÷ NZ_CP009273 1416622 1416638 17 2 [1] [1] 2 ydaV ATP‑binding protein
* * ÷ NZ_CP009273 1420855 1420891 37 2 [1] [1] 2 ynaA phage tail length tape measure family protein
* * ÷ NZ_CP009273 1424002 1424025 24 2 [1] [1] 2 stfR prophage tail fiber N‑terminal domain‑containing protein
* * ÷ NZ_CP009273 1435258 1435315 58 2 [1] [1] 2 [ydbJ] [ydbJ]
* * ÷ NZ_CP009273 1453769 1453838 70 3 [0] [1] 2 paaC 3‑hydroxyacyl‑CoA dehydrogenase PaaC
* * ÷ NZ_CP009273 1459384 1459574 191 2 [1] [1] 2 BW25113_RS25580 BW25113_RS25580
* * ÷ NZ_CP009273 1478764 1478774 11 2 [0] [1] 4 hrpA ATP‑dependent RNA helicase HrpA
* * ÷ NZ_CP009273 1524658 1524728 71 3 [1] [0] 2 BW25113_RS25600 protein YncO
* * ÷ NZ_CP009273 1534817 1534837 21 5 [0] [1] 2 narZ nitrate reductase Z subunit alpha
* * ÷ NZ_CP009273 1540354 1540545 192 2 [1] [1] 2 [yddG] [yddG]
* * ÷ NZ_CP009273 1556267 1556395 129 2 [0] [1] 2 ddpA ABC transporter substrate‑binding protein
* * ÷ NZ_CP009273 1574926 1574936 11 2 [0] [1] 2 ydeM anaerobic sulfatase maturase
* * ÷ NZ_CP009273 1576958 1577008 51 4 [1] [1] 2 ydeN/ydeO sulfatase/acid stress response transcriptional regulator YdeO
* * ÷ NZ_CP009273 1577410 1577426 17 2 [1] [1] 2 ydeO acid stress response transcriptional regulator YdeO
* * ÷ NZ_CP009273 1577842 1577998 157 3 [1] [1] 2 [ydeO] [ydeO]
* * ÷ NZ_CP009273 1581002 1581011 10 2 [1] [1] 2 ydeP/ydeQ acid resistance putative oxidoreductase YdeP/fimbrial protein
* * ÷ NZ_CP009273 1585527 1585559 33 2 [1] [1] 2 hipA type II toxin‑antitoxin system serine/threonine protein kinase toxin HipA
* * ÷ NZ_CP009273 1592510 1592575 66 2 [1] [1] 2 BW25113_RS07915/lsrK ECSE_1600 family autotransporter/autoinducer‑2 kinase
* * ÷ NZ_CP009273 1605402 1605447 46 2 [1] [1] 2 dgcF GGDEF domain‑containing protein
* * ÷ NZ_CP009273 1624751 1624770 20 2 [1] [1] 2 ydfI mannitol dehydrogenase family protein
* * ÷ NZ_CP009273 1627546–1627839 1627850–1627849 11–305 2 [1] [1] 2 [ydfK] [ydfK]
* * ÷ NZ_CP009273 1629638 1629657 20 3 [1] [1] 2 stfQ phage tail protein
* * ÷ NZ_CP009273 1634968 1635024 57 2 [1] [1] 2 essD/ynfU phage lysis protein EssD/putative zinc‑binding protein YnfU
* * ÷ NZ_CP009273 1636362 1636366 5 2 [0] [1] 2 cspF/BW25113_RS25625 cold shock‑like protein CspF/hypothetical protein
* * ÷ NZ_CP009273 1663672 1663750 79 2 [0] [1] 2 ynfL LysR family transcriptional regulator
* * ÷ NZ_CP009273 1665475 1665481 7 2 [1] [1] 2 ynfM/asr MFS transporter/acid resistance repetitive basic protein Asr
* * ÷ NZ_CP009273 1667832 1667869 38 2 [1] [1] 2 mdtJ/tqsA multidrug/spermidine efflux SMR transporter subunit MdtJ/AI‑2 transporter TqsA
* * ÷ NZ_CP009273 1688512 1688595 84 2 [1] [1] 2 [uidB]–[uidA] [uidB],[uidA]
* * ÷ NZ_CP009273 1706321 1706338 18 2 [1] [1] 2 nth endonuclease III
* * ÷ NZ_CP009273 1718567 1718597 31 2 [1] [0] 2 sodC superoxide dismutase [Cu‑Zn] SodC
* * ÷ NZ_CP009273 1728887 1728938 52 2 [1] [1] 3 mepH peptidoglycan DD‑endopeptidase MepH
* * ÷ NZ_CP009273 1735377 1735387 11 3 [0] [1] 4 [punC] [punC]
* * ÷ NZ_CP009273 1738242 1738320 79 2 [1] [1] 2 mdtK multidrug efflux MATE transporter MdtK
* * ÷ NZ_CP009273 1747556 1747561 6 2 [1] [0] 2 ydhV aldehyde ferredoxin oxidoreductase
* * ÷ NZ_CP009273 1750607 1750638 32 2 [1] [1] 2 pykF pyruvate kinase PykF
* * ÷ NZ_CP009273 1778679 1778718 40 2 [0] [1] 2 fadK medium‑chain fatty‑acid‑‑CoA ligase
* * ÷ NZ_CP009273 1781399 1781416 18 2 [1] [1] 4 ppsA/ppsR phosphoenolpyruvate synthase/posphoenolpyruvate synthetase regulatory kinase/phosphorylase PpsR
* * ÷ NZ_CP009273 1783444 1783565 122 2 [1] [1] 2 aroH 3‑deoxy‑7‑phosphoheptulonate synthase AroH
* * ÷ NZ_CP009273 1787800 1787841 42 2 [1] [1] 2 [btuD]–[btuE] [btuD],[btuE]
* * ÷ NZ_CP009273 1789301 1789351 51 3 [1] [1] 2 btuC vitamin B12 ABC transporter permease BtuC
* * ÷ NZ_CP009273 1791626 1791687 62 2 [0] [1] 2 pheT phenylalanine‑‑tRNA ligase subunit beta
* * ÷ NZ_CP009273 1794537 1794574 38 2 [1] [1] 3 infC translation initiation factor IF‑3
* * ÷ NZ_CP009273 1801052 1801153 102 3 [1] [0] 5 pfkB 6‑phosphofructokinase II
* * ÷ NZ_CP009273 1806265 1806288 24 3 [1] [1] 2 tcyP cystine/sulfocysteine:cation symporter
* * ÷ NZ_CP009273 1807394 1807456 63 2 [1] [1] 3 BW25113_RS09050/cedA hypothetical protein/cell division activator CedA
* * ÷ NZ_CP009273 1807518 1807574 57 2 [1] [1] 3 BW25113_RS09050/cedA hypothetical protein/cell division activator CedA
* * ÷ NZ_CP009273 1809899 1809912 14 2 [1] [0] 3 katE catalase HPII
* * ÷ NZ_CP009273 1828893 1828946 54 2 [1] [1] 3 ydjY lipoprotein YdjY
* * ÷ NZ_CP009273 1830645 1830686 42 2 [0] [1] 2 ynjB ABC transporter substrate‑binding protein
* * ÷ NZ_CP009273 1831180 1831244 65 3 [1] [1] 2 ynjB ABC transporter substrate‑binding protein
* * ÷ NZ_CP009273 1835922 1835945 24 2 [1] [1] 3 nudG CTP pyrophosphohydrolase
* * ÷ NZ_CP009273 1836576 1836618 43 3 [1] [1] 3 ynjH/gdhA YnjH family protein/NADP‑specific glutamate dehydrogenase
* * ÷ NZ_CP009273 1840376 1840436 61 2 [0] [1] 2 topB DNA topoisomerase III
* * ÷ NZ_CP009273 1843995 1844005 11 3 [0] [0] 2 sppA signal peptide peptidase SppA
* * ÷ NZ_CP009273 1845183 1845191 9 5 [1] [1] 2 ansA asparaginase
* * ÷ NZ_CP009273 1855704 1855714 11 2 [0] [0] 3 ydjL/yeaC zinc‑binding dehydrogenase/YeaC family protein
* * ÷ NZ_CP009273 1880800 1880810 11 3 [1] [1] 2 yeaX carnitine monooxygenase subunit YeaX
* * ÷ NZ_CP009273 1882142 1882174 33 3 [1] [1] 4 rnd ribonuclease D
* * ÷ NZ_CP009273 1888032 1888087 56 2 [1] [1] 2 yoaB/yoaC RidA family protein/DUF1889 family protein
* * ÷ NZ_CP009273 1889862 1889938 77 2 [1] [1] 2 pabB aminodeoxychorismate synthase component 1
* * ÷ NZ_CP009273 1890530 1890569 40 2 [1] [0] 2 nudL CoA pyrophosphatase
* * ÷ NZ_CP009273 1902940 1902958 19 3 [1] [0] 2 mgrB PhoP/PhoQ regulator MgrB
* * ÷ NZ_CP009273 1914819 1914938 120 2 [1] [1] 2 rsmF 16S rRNA (cytosine(1407)‑C(5))‑methyltransferase RsmF
* * ÷ NZ_CP009273 1918135 1918174 40 2 [1] [1] 2 copD copper homeostasis membrane protein CopD
* * ÷ NZ_CP009273 1919215 1919241 27 2 [0] [1] 2 [yobA] [yobA]
* * ÷ NZ_CP009273 1940891 1940908 18 2 [0] [1] 5 yebB YebB family permuted papain‑like enzyme
* * ÷ NZ_CP009273 1943087 1943119 33 3 [1] [1] 2 aspS aspartate‑‑tRNA ligase
* * ÷ NZ_CP009273 1972996 1973057 62 2 [1] [1] 2 flhD/uspC flagellar transcriptional regulator FlhD/universal stress protein UspC
* * ÷ NZ_CP009273 1974546 1974577 32 2 [1] [1] 4 otsA alpha,alpha‑trehalose‑phosphate synthase
* * ÷ NZ_CP009273 1975234 1975250 17 3 [1] [0] 2 otsB trehalose‑phosphatase
* * ÷ NZ_CP009273 1975938 1975940 3 2 [0] [1] 2 otsB/araH trehalose‑phosphatase/arabinose ABC transporter permease AraH
* * ÷ NZ_CP009273 1977457 1977507 51 2 [1] [1] 2 araG arabinose ABC transporter ATP‑binding protein AraG
* * ÷ NZ_CP009273 1980218 1980254 37 2 [0] [1] 2 araF/ftnB arabinose ABC transporter substrate‑binding protein AraF/non‑heme ferritin‑like protein
* * ÷ NZ_CP009273 1982103 1982146 44 2 [1] [1] 2 yecR/ftnA YecR‑like lipofamily protein/non‑heme ferritin
* * ÷ NZ_CP009273 1994289 1994356 68 2 [1] [1] 2 fliZ flagella biosynthesis regulatory protein FliZ
* * ÷ NZ_CP009273 2000860 2000903 44 3 [0] [1] 2 amyA alpha‑amylase
* * ÷ NZ_CP009273 2001095 2001158 64 2 [1] [1] 2 [amyA]–[yedD] [amyA],[yedD]
* * ÷ NZ_CP009273 2010279 2010305 27 2 [1] [1] 2 fliI flagellar protein export ATPase FliI
* * ÷ NZ_CP009273 2024909 2024983 75 2 [1] [1] 3 dcm DNA‑cytosine methyltransferase
* * ÷ NZ_CP009273 2047522 2047618 97 2 [1] [0] 2 shiA shikimate transporter
* * ÷ NZ_CP009273 2050131 2050273 143 2 [0] [1] 2 amn/yeeN AMP nucleosidase/YebC/PmpR family DNA‑binding transcriptional regulator
* * ÷ NZ_CP009273 2051051 2051156 106 2 [1] [1] 2 [yeeN] [yeeN]
* * ÷ NZ_CP009273 2076611 2076646 36 2 [1] [1] 2 sbcB exodeoxyribonuclease I
* * ÷ NZ_CP009273 2080775 2080851 77 2 [1] [0] 2 [yeeY] [yeeY]
* * ÷ NZ_CP009273 2097483 2097530 48 2 [1] [1] 2 wbbK glycosyltransferase family 1 protein
* * ÷ NZ_CP009273 2097870 2097946 77 2 [0] [1] 3 wbbK glycosyltransferase family 1 protein
* * ÷ NZ_CP009273 2099095 2099142 48 2 [0] [1] 2 wbbI beta‑1,6‑galactofuranosyltransferase
* * ÷ NZ_CP009273 2099676 2099731 56 2 [1] [1] 3 wzy O16 family O‑antigen polymerase
* * ÷ NZ_CP009273 2100434 2100452 19 2 [1] [0] 2 wzy O16 family O‑antigen polymerase
* * ÷ NZ_CP009273 2112420 2112481 62 2 [1] [1] 3 wzxC colanic acid undecaprenyl disphosphate flippase WzxC
* * ÷ NZ_CP009273 2114683 2114688 6 2 [0] [0] 2 wcaJ UDP‑glucose‑‑undecaprenyl‑phosphate glucose‑1‑phosphate transferase
* * ÷ NZ_CP009273 2114769 2114798 30 3 [1] [1] 2 wcaJ UDP‑glucose‑‑undecaprenyl‑phosphate glucose‑1‑phosphate transferase
* * ÷ NZ_CP009273 2117375 2117387 13 2 [1] [1] 2 cpsB mannose‑1‑phosphate guanyltransferase
* * ÷ NZ_CP009273 2118510 2118568 59 2 [1] [1] 2 wcaI colanic acid biosynthesis fucosyltransferase WcaI
* * ÷ NZ_CP009273 2140318 2140382 65 2 [1] [1] 2 alkA DNA‑3‑methyladenine glycosylase 2
* * ÷ NZ_CP009273 2152941 2152979 39 3 [1] [1] 2 mdtC multidrug efflux RND transporter permease subunit MdtC
* * ÷ NZ_CP009273 2157313 2157360 48 2 [1] [0] 2 baeS two‑component system sensor histidine kinase BaeS
* * ÷ NZ_CP009273 2167046 2167054 9 2 [1] [0] 2 BW25113_RS10915 galactitol‑specific PTS transporter subunit IIC
* * ÷ NZ_CP009273 2167636 2167662 27 2 [1] [1] 2 BW25113_RS10915 galactitol‑specific PTS transporter subunit IIC
* * ÷ NZ_CP009273 2185795 2185876 82 2 [1] [1] 2 yehD/yehE fimbrial protein/YehE family protein
* * ÷ NZ_CP009273 2210024 2210035 12 2 [0] [1] 2 yehX glycine betaine ABC transporter ATP binding protein YehX
* * ÷ NZ_CP009273 2211948 2212015 68 3 [1] [1] 2 yehY glycine betaine ABC transporter permease YehY
* * ÷ NZ_CP009273 2216192 2216222 31 3 [1] [1] 2 dld D‑lactate dehydrogenase
* * ÷ NZ_CP009273 2218924 2218934 11 5 [0] [1] 3 yohC Yip1 family protein
* * ÷ NZ_CP009273 2294163 2294187 25 2 [1] [1] 2 napA periplasmic nitrate reductase subunit alpha
* * ÷ NZ_CP009273 2297185 2297291 107 2 [1] [0] 2 [BW25113_RS25870] [BW25113_RS25870]
* * ÷ NZ_CP009273 2323146 2323174 29 3 [1] [1] 2 yfaQ YfaQ family protein
* * ÷ NZ_CP009273 2323576 2323605 30 2 [1] [1] 3 BW25113_RS11635 alpha‑2‑macroglobulin family protein
* * ÷ NZ_CP009273 2329322 2329376 55 2 [0] [1] 3 yfaA DUF2138 domain‑containing protein
* * ÷ NZ_CP009273 2360337 2360371 35 2 [1] [0] 2 arnB UDP‑4‑amino‑4‑deoxy‑L‑arabinose aminotransferase
* * ÷ NZ_CP009273 2370800 2370826 27 2 [1] [1] 2 menH 2‑succinyl‑6‑hydroxy‑2, 4‑cyclohexadiene‑1‑carboxylate synthase
* * ÷ NZ_CP009273 2370917 2370935 19 2 [1] [1] 3 menH 2‑succinyl‑6‑hydroxy‑2, 4‑cyclohexadiene‑1‑carboxylate synthase
* * ÷ NZ_CP009273 2377307 2377341 35 2 [1] [1] 2 elaD deubiquitinase ElaD
* * ÷ NZ_CP009273 2385768 2385776 9 3 [0] [1] 2 nuoM NADH‑quinone oxidoreductase subunit M
* * ÷ NZ_CP009273 2430686 2430700 15 2 [1] [1] 3 pdxB 4‑phosphoerythronate dehydrogenase PdxB
* * ÷ NZ_CP009273 2446950 2446960 11 2 [0] [1] 2 yfcU fimbrial usher protein YfcU
* * ÷ NZ_CP009273 2462938 2463025 88 3 [1] [0] 4 BW25113_RS12270 hypothetical protein
* * ÷ NZ_CP009273 2463237 2463247 11 3 [0] [1] 2 BW25113_RS12270 hypothetical protein
* * ÷ NZ_CP009273 2463679 2463794 116 2 [1] [1] 2 BW25113_RS12270 hypothetical protein
* * ÷ NZ_CP009273 2505213 2505274 62 2 [1] [1] 2 mntH Nramp family divalent metal transporter
* * ÷ NZ_CP009273 2542182 2542200 19 2 [1] [1] 2 pbp4b penicillin binding protein PBP4B
* * ÷ NZ_CP009273 2555597 2555635 39 5 [1] [1] 3 BW25113_RS12755 hypothetical protein
* * ÷ NZ_CP009273 2569005 2569048 44 2 [1] [1] 2 eutS ethanolamine utilization microcompartment protein EutS
* * ÷ NZ_CP009273 2571264 2571281 18 3 [1] [0] 2 maeB NADP‑dependent oxaloacetate‑decarboxylating malate dehydrogenase
* * ÷ NZ_CP009273 2575845 2575876 32 2 [1] [0] 2 ypfG DUF1176 domain‑containing protein
* * ÷ NZ_CP009273 2584399 2584519 121 3 [1] [1] 2 ypfM/yffB protein YpfM/ArsC family reductase
* * ÷ NZ_CP009273 2603267 2603305 39 3 [1] [1] 2 hyfG hydrogenase 4 catalytic subunit HyfG
* * ÷ NZ_CP009273 2613009 2613056 48 2 [1] [1] 2 uraA uracil permease
* * ÷ NZ_CP009273 2619480 2619493 14 3 [1] [1] 2 ppx exopolyphosphatase
* * ÷ NZ_CP009273 2622883 2623042 160 2 [1] [1] 2 yfgG/yfgH YfgG family protein/glycine zipper 2TM domain‑containing protein
* * ÷ NZ_CP009273 2628152 2628197 46 2 [1] [1] 2 xseA exodeoxyribonuclease VII large subunit
* * ÷ NZ_CP009273 2633868 2633995 128 2 [0] [1] 2 [hisS] [hisS]
* * ÷ NZ_CP009273 2643482 2643519 38 2 [1] [1] 2 yfhM alpha2‑macroglobulin
* * ÷ NZ_CP009273 2687810 2687838 29 3 [1] [1] 2 purL phosphoribosylformylglycinamidine synthase
* * ÷ NZ_CP009273 2707445 2707460 16 2 [1] [1] 2 srmB ATP‑dependent RNA helicase SrmB
* * ÷ NZ_CP009273 2709885 2709891 7 6 [0] [1] 2 grcA/ung autonomous glycyl radical cofactor GrcA/uracil‑DNA glycosylase
* * ÷ NZ_CP009273 2735107 2735118 12 2 [1] [1] 2 yfiL/yfiR DUF2799 domain‑containing protein/YfiR family protein
* * ÷ NZ_CP009273 2736004 2736022 19 2 [1] [1] 3 dgcN diguanylate cyclase DgcN
* * ÷ NZ_CP009273 2753647 2753752 106 2 [1] [1] 2 yfjI YfjI family protein
* * ÷ NZ_CP009273 2765216 2765315 100 2 [1] [1] 2 BW25113_RS13755/BW25113_RS26200 hypothetical protein/arsenate reductase
* * ÷ NZ_CP009273 2767746 2767791 46 2 [1] [1] 2 BW25113_RS13770 hypothetical protein
* * ÷ NZ_CP009273 2768387 2768436 50 2 [1] [1] 3 BW25113_RS13770/BW25113_RS24190 hypothetical protein/DUF905 domain‑containing protein
* * ÷ NZ_CP009273 2781896 2781935 40 2 [1] [1] 4 BW25113_RS26005 alpha‑amylase family glycosyl hydrolase
* * ÷ NZ_CP009273 2828638 2828696 59 2 [0] [1] 2 hypF carbamoyltransferase HypF
* * ÷ NZ_CP009273 2863957 2864004 48 3 [1] [1] 2 truD tRNA pseudouridine(13) synthase TruD
* * ÷ NZ_CP009273 2881801 2881849 49 2 [1] [1] 2 cysI assimilatory sulfite reductase (NADPH) hemoprotein subunit
* * ÷ NZ_CP009273 2888417 2888432 16 2 [1] [1] 2 ygcQ electron transfer flavoprotein subunit alpha/FixB family protein
* * ÷ NZ_CP009273 2889780 2889840 61 2 [1] [1] 2 ygcR electron transfer flavoprotein subunit beta/FixA family protein
* * ÷ NZ_CP009273 2897032 2897158 127 2 [0] [1] 2 ygcE/queE FGGY‑family carbohydrate kinase/7‑carboxy‑7‑deazaguanine synthase QueE
* * ÷ NZ_CP009273 2897769 2897864 96 2 [0] [1] 2 ygcE/queE FGGY‑family carbohydrate kinase/7‑carboxy‑7‑deazaguanine synthase QueE
* * ÷ NZ_CP009273 2945141 2945157 17 2 [1] [0] 2 recD exodeoxyribonuclease V subunit alpha
* * ÷ NZ_CP009273 2945205 2945258 54 2 [0] [1] 3 recD exodeoxyribonuclease V subunit alpha
* * ÷ NZ_CP009273 2971521 2971524 4 5 [0] [1] 2 lysA diaminopimelate decarboxylase
* * ÷ NZ_CP009273 2975769 2975796 28 2 [1] [1] 4 araE/kduD arabinose‑proton symporter AraE/2‑dehydro‑3‑deoxy‑D‑gluconate 5‑dehydrogenase KduD
* * ÷ NZ_CP009273 2981737 2981773 37 2 [1] [1] 2 yqeH/yqeI helix‑turn‑helix transcriptional regulator/transcriptional regulator
* * ÷ NZ_CP009273 2984444 2984503 60 3 [1] [1] 2 BW25113_RS14825/ygeG hypothetical protein/tetratricopeptide repeat protein
* * ÷ NZ_CP009273 3072795 3072827 33 2 [1] [1] 2 cmtB/tkt PTS mannitol transporter subunit IIA/transketolase
* * ÷ NZ_CP009273 3077698 3077698 1 2 [0] [0] 3 speA biosynthetic arginine decarboxylase
* * ÷ NZ_CP009273 3108567 3108602 36 4 [1] [1] 2 sslE lipoprotein metalloprotease SslE
* * ÷ NZ_CP009273 3178632 3178678 47 2 [0] [1] 2 ubiK/ygiL ubiquinone biosynthesis accessory factor UbiK/fimbrial‑like protein
* * ÷ NZ_CP009273 3246105 3246222 118 2 [1] [1] 2 yhaH/yhaI DUF805 domain‑containing protein/DUF805 domain‑containing protein
* * ÷ NZ_CP009273 3247295 3247323 29 2 [1] [1] 2 yhaJ DNA‑binding transcriptional regulator YhaJ
* * ÷ NZ_CP009273 3277455 3277516 62 2 [1] [1] 5 kbaY/agaB tagatose‑bisphosphate aldolase subunit KbaY/PTS galactosamine transporter subunit IIB
* * ÷ NZ_CP009273 3290942 3290960 19 2 [1] [1] 2 yraQ permease
* * ÷ NZ_CP009273 3361892 3361966 75 2 [1] [1] 2 yhcG PDDEXK nuclease domain‑containing protein
* * ÷ NZ_CP009273 3378652 3378783 132 4 [1] [1] 3 argR/yhcN transcriptional regulator ArgR/peroxide/acid stress response protein YhcN
* * ÷ NZ_CP009273 3379148 3379165 18 2 [0] [1] 3 [yhcN] [yhcN]
* * ÷ NZ_CP009273 3499920 3499940 21 4 [1] [1] 2 yhfT YhfT family protein
* * ÷ NZ_CP009273 3546146 3546175 30 2 [0] [0] 2 malP/malT maltodextrin phosphorylase/HTH‑type transcriptional regulator MalT
* * ÷ NZ_CP009273 3617682 3617713 32 4 [1] [1] 2 BW25113_RS18035/yhhI lyase/ISAs1‑like element ISEc1 family transposase
* * ÷ NZ_CP009273 3709623 3709634 12 3 [1] [1] 2 bisC biotin sulfoxide reductase
* * ÷ NZ_CP009273 3751255 3751313 59 5 [1] [1] 2 yiaY/selB L‑threonine dehydrogenase/selenocysteine‑specific translation elongation factor
* * ÷ NZ_CP009273 3762960 3763058 99 2 [0] [1] 2 BW25113_RS26240 Imm57 family immunity protein
* * ÷ NZ_CP009273 3764170 3764209 40 2 [1] [1] 2 yibH HlyD family secretion protein
* * ÷ NZ_CP009273 3792557 3792637 81 2 [0] [0] 2 waaU glycosyltransferase family 9 protein
* * ÷ NZ_CP009273 3793541 3793560 20 2 [1] [0] 2 [waaZ] [waaZ]
* * ÷ NZ_CP009273 3808537 3808560 24 2 [1] [1] 2 pyrE orotate phosphoribosyltransferase
* * ÷ NZ_CP009273 3830616 3830646 31 2 [0] [1] 3 setC sugar efflux transporter
* * ÷ NZ_CP009273 3943499 3943510 12 2 [1] [1] 2 yifB/ilvL YifB family Mg chelatase‑like AAA ATPase/ilv operon leader peptide
* * ÷ NZ_CP009273 3962909 3962930 22 2 [1] [1] 2 wzzE ECA polysaccharide chain length modulation protein
* * ÷ NZ_CP009273 3972383 3972395 13 3 [1] [1] 2 wzyE ECA oligosaccharide polymerase
* * ÷ NZ_CP009273 3979625 3979660 36 2 [1] [0] 2 aslA/hemY arylsulfatase AslA/protoheme IX biogenesis protein HemY
* * ÷ NZ_CP009273 3996497 3996508 12 2 [0] [1] 2 BW25113_RS19825 hypothetical protein
* * ÷ NZ_CP009273 3996604 3996614 11 2 [0] [1] 3 BW25113_RS19825/rarD hypothetical protein/EamA family transporter RarD
* * ÷ NZ_CP009273 4021411 4021442 32 3 [1] [1] 2 fadA acetyl‑CoA C‑acyltransferase FadA
* * ÷ NZ_CP009273 4077907 4077939 33 2 [1] [1] 3 fdnG formate dehydrogenase‑N subunit alpha
* * ÷ NZ_CP009273 4120471 4120471 1 3 [0] [0] 3 metL bifunctional aspartate kinase/homoserine dehydrogenase II
* * ÷ NZ_CP009273 4131784 4131794 11 2 [1] [1] 3 ptsP phosphoenolpyruvate‑‑protein phosphotransferase
* * ÷ NZ_CP009273 4156175 4156178 4 2 [1] [1] 2 murI glutamate racemase
* * ÷ NZ_CP009273 4225572 4225608 37 2 [1] [1] 2 pgi/yjbE glucose‑6‑phosphate isomerase/exopolysaccharide production protein YjbE
* * ÷ NZ_CP009273 4386611 4386627 17 3 [1] [1] 3 amiB N‑acetylmuramoyl‑L‑alanine amidase AmiB
* * ÷ NZ_CP009273 4399887 4399945 59 2 [1] [0] 2 rlmB/yjfI 23S rRNA (guanosine(2251)‑2'‑O)‑methyltransferase RlmB/DUF2170 family protein
* * ÷ NZ_CP009273 4562051 4562080 30 2 [1] [1] 2 yjiS/yjiT DUF1127 domain‑containing protein/protein YjiT
* * ÷ NZ_CP009273 4590767 4590809 43 2 [1] [0] 2 [dnaC]–[dnaT] [dnaC],[dnaT]
* * ÷ NZ_CP009273 4630511 4630566 56 2 [1] [1] 2 BW25113_RS22930/yjtD hypothetical protein/tRNA/rRNA methyltransferase

Unassigned new junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NZ_CP009273 360104 =NA (NA)24 (2.260) 14/168 0.1 53.3% intergenic (‑35/+251) lacZ/BW25113_RS23320 beta‑galactosidase/relaxase/mobilization nuclease domain‑containing protein
?NZ_CP009273 = 360286 21 (1.970)intergenic (‑217/+69) lacZ/BW25113_RS23320 beta‑galactosidase/relaxase/mobilization nuclease domain‑containing protein
* ? NZ_CP009273 1203246 =8 (0.750)7 (0.820) 6/136 0.3 68.4% coding (290/630 nt) BW25113_RS05990 hypothetical protein
?NZ_CP009273 1205075 = 0 (0.000)coding (40/540 nt) BW25113_RS06005 phage tail protein
* ? NZ_CP009273 1903030 =0 (0.000)10 (0.940) 10/168 0.2 100% intergenic (‑7/‑152) mgrB/yobH PhoP/PhoQ regulator MgrB/YobH family protein
?NZ_CP009273 = 2063752 NA (NA)intergenic (‑91/‑3) BW25113_RS10425/BW25113_RS10435 IS3‑like element IS2 family transposase/TonB‑dependent receptor plug domain‑containing protein
* ? NZ_CP009273 = 19030350 (0.000)8 (0.760) 8/166 0.3 100% intergenic (‑12/‑147) mgrB/yobH PhoP/PhoQ regulator MgrB/YobH family protein
?NZ_CP009273 2062423 = NA (NA)intergenic (+2/+10) BW25113_RS24005/BW25113_RS10425 TonB‑dependent receptor plug domain‑containing protein/IS3‑like element IS2 family transposase
* ? NZ_CP009273 = 19727510 (0.000)7 (0.660) 5/168 0.6 100% intergenic (‑297/‑483) flhD/uspC flagellar transcriptional regulator FlhD/universal stress protein UspC
?NZ_CP009273 = 2283592 NA (NA)intergenic (‑68/‑387) BW25113_RS11435/narP IS5‑like element IS5 family transposase/nitrate/nitrite response regulator protein NarP
* ? NZ_CP009273 = 3180784NA (NA)7 (0.670) 6/166 0.5 100% coding (26/2466 nt) BW25113_RS15810 fimbrial biogenesis outer membrane usher protein
?NZ_CP009273 3512452 = 0 (0.000)intergenic (‑29/+372) aroK/hofQ shikimate kinase AroK/DNA uptake porin HofQ
* ? NZ_CP009273 = 35124571 (0.090)12 (1.130) 11/168 0.1 92.3% intergenic (‑34/+367) aroK/hofQ shikimate kinase AroK/DNA uptake porin HofQ
?NZ_CP009273 4487998 = NA (NA)intergenic (+241/‑91) BW25113_RS22170/BW25113_RS22180 tyrosine‑type recombinase/integrase/IS3‑like element IS2 family transposase
* ? NZ_CP009273 4532499 =2 (0.190)4 (0.420) 4/150 0.6 62.6% intergenic (+49/‑433) fimE/fimA type 1 fimbria switch DNA invertase FimE/type 1 fimbrial major subunit FimA
?NZ_CP009273 4532813 = 3 (0.320)intergenic (+363/‑119) fimE/fimA type 1 fimbria switch DNA invertase FimE/type 1 fimbrial major subunit FimA