breseq  version 0.33.1  revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Predicted mutations
evidence position mutation freq annotation gene description
RA 50,588 G→A 6.3% A212V (GCG→GTG)  apaH ← diadenosine tetraphosphatase
RA 83,587 A→C 6.9% intergenic (‑58/+35) leuA ← / ← leuL 2‑isopropylmalate synthase/leu operon leader peptide
RA 83,590 G→T 6.4% intergenic (‑61/+32) leuA ← / ← leuL 2‑isopropylmalate synthase/leu operon leader peptide
RA 112,082 T→C 7.0% D173G (GAT→GGT)  zapD ← FtsZ stabilizer
RA 127,603 C→G 7.5% intergenic (+16/‑309) aceF → / → lpd pyruvate dehydrogenase, dihydrolipoyltransacetylase component E2/dihydrolipoyl dehydrogenase; E3 component of pyruvate and 2‑oxoglutarate dehydrogenases complexes; glycine cleavage system L protein; dihydrolipoamide dehydrogenase
RA 127,604 A→T 7.1% intergenic (+17/‑308) aceF → / → lpd pyruvate dehydrogenase, dihydrolipoyltransacetylase component E2/dihydrolipoyl dehydrogenase; E3 component of pyruvate and 2‑oxoglutarate dehydrogenases complexes; glycine cleavage system L protein; dihydrolipoamide dehydrogenase
RA 127,605 A→T 7.5% intergenic (+18/‑307) aceF → / → lpd pyruvate dehydrogenase, dihydrolipoyltransacetylase component E2/dihydrolipoyl dehydrogenase; E3 component of pyruvate and 2‑oxoglutarate dehydrogenases complexes; glycine cleavage system L protein; dihydrolipoamide dehydrogenase
RA 127,606 C→G 7.5% intergenic (+19/‑306) aceF → / → lpd pyruvate dehydrogenase, dihydrolipoyltransacetylase component E2/dihydrolipoyl dehydrogenase; E3 component of pyruvate and 2‑oxoglutarate dehydrogenases complexes; glycine cleavage system L protein; dihydrolipoamide dehydrogenase
RA 214,739 T→C 5.7% M150T (ATG→ACG)  yaeQ → PDDEXK superfamily protein
MC JC 257,908 Δ776 bp 100% [crl] [crl]
RA 299,644 C→G 5.6% V431L (GTC→CTC)  paoC ← PaoABC aldehyde oxidoreductase, Moco‑containing subunit
RA 299,739 C→T 5.4% R399H (CGT→CAT)  paoC ← PaoABC aldehyde oxidoreductase, Moco‑containing subunit
RA 309,846 G→A 6.3% P61S (CCG→TCG)  ecpB ← ECP production pilus chaperone
RA 340,050 G→T 7.1% intergenic (+307/‑115) yahG → / → yahI DUF1116 family protein/carbamate kinase‑like protein
RA 340,051 A→C 7.0% intergenic (+308/‑114) yahG → / → yahI DUF1116 family protein/carbamate kinase‑like protein
RA 340,057 T→G 6.1% intergenic (+314/‑108) yahG → / → yahI DUF1116 family protein/carbamate kinase‑like protein
RA 340,058 T→C 6.2% intergenic (+315/‑107) yahG → / → yahI DUF1116 family protein/carbamate kinase‑like protein
RA 353,717 C→G 6.1% R338G (CGC→GGC)  prpE → propionate‑‑CoA ligase
RA 396,037 C→T 8.0% R84H (CGT→CAT)  ampH ← D‑alanyl‑D‑alanine‑ carboxypeptidase/endopeptidase; penicillin‑binding protein; weak beta‑lactamase
RA 404,513 C→A 5.7% L271I (CTT→ATT)  yaiC → diguanylate cyclase, cellulose regualtor
RA 423,329 A→G 6.8% H271R (CAC→CGC)  malZ → maltodextrin glucosidase
RA 488,165 G→A 5.8% D544N (GAC→AAC)  mscK → mechanosensitive channel protein, intermediate conductance, K+ regulated
RA 569,160 G→T 5.4% D87Y (GAC→TAC) ‡ ybcK → DLP12 prophage; putative recombinase
RA 569,161 A→C 5.6% D87A (GAC→GCC) ‡ ybcK → DLP12 prophage; putative recombinase
RA 594,606 G→A 8.2% S55S (AGC→AGT cusS ← copper‑sensing histidine kinase in two‑component regulatory system with CusR
RA 696,410 C→T 5.5% intergenic (+134/+20) ubiF → / ← glnX 2‑octaprenyl‑3‑methyl‑6‑methoxy‑1,4‑benzoquinol oxygenase/tRNA‑Gln
RA 696,412 A→C 5.1% intergenic (+136/+18) ubiF → / ← glnX 2‑octaprenyl‑3‑methyl‑6‑methoxy‑1,4‑benzoquinol oxygenase/tRNA‑Gln
RA 696,413 A→G 5.5% intergenic (+137/+17) ubiF → / ← glnX 2‑octaprenyl‑3‑methyl‑6‑methoxy‑1,4‑benzoquinol oxygenase/tRNA‑Gln
RA 698,669 C→T 8.3% R170H (CGC→CAC)  asnB ← asparagine synthetase B
RA 703,478 G→A 6.5% P45L (CCG→CTG)  nagB ← glucosamine‑6‑phosphate deaminase
RA 800,044 C→T 6.1% A178T (GCC→ACC)  ybhD ← putative DNA‑binding transcriptional regulator
RA 843,652 G→A 8.4% P610L (CCG→CTG)  ybiO ← mechanosensitive channel protein, intermediate conductance
RA 855,411 Δ1 bp 6.9% coding (334/921 nt) ldtB ← L,D‑transpeptidase linking Lpp to murein
RA 864,299 A→G 7.1% I220V (ATT→GTT)  fsaA → fructose‑6‑phosphate aldolase 1
RA 874,830 T→A 5.7% F618I (TTC→ATC)  yliE → putative membrane‑anchored cyclic‑di‑GMP phosphodiesterase
RA 880,887 C→T 5.6% A54V (GCA→GTA)  dacC → D‑alanyl‑D‑alanine carboxypeptidase; penicillin‑binding protein 6a
RA 895,325 T→C 5.1% I112T (ATC→ACC)  potG → putrescine ABC transporter ATPase
RA 939,974 C→T 9.5% L183L (CTG→TTG)  serS → seryl‑tRNA synthetase
RA 952,191 A→G 6.0% L455P (CTG→CCG)  pflB ← formate C‑acetyltransferase 1, anaerobic; pyruvate formate‑lyase 1
RA 1,001,174 C→T 5.9% S653S (AGC→AGT elfC → putative outer membrane fimbrial subunit export usher protein
RA 1,003,952 T→C 5.5% *172Q (TAA→CAA) 
T2T (ACT→ACC
ycbV →
ycbF →
putative fimbrial‑like adhesin protein
putative periplasmic pilin chaperone
RA 1,085,098 C→T 5.4% P36L (CCT→CTT)  phoH → ATP‑binding protein; putative PhoH family P‑loop ATPase
RA 1,108,414 C→T 10.8% M176I (ATG→ATA opgC ← OPG biosynthetic transmembrane succinyltransferase
RA 1,111,785 G→A 7.7% G308D (GGC→GAC)  opgH → OPG biosynthetic ACP‑dependent transmembrane UDP‑glucose beta‑1,2 glycosyltransferase; nutrient‑dependent cell size regulator, FtsZ assembly antagonist
RA 1,131,440 G→A 5.0% M1M (ATG→ATA) † flgC → flagellar component of cell‑proximal portion of basal‑body rod
RA 1,155,647 T→A 7.7% L175Q (CTG→CAG)  tmk → thymidylate kinase
RA 1,253,896 C→T 6.0% R686Q (CGA→CAA)  ycgV ← putative adhesin
RA 1,286,983 A→G 14.8% intergenic (+457/+83) narI → / ← rttR nitrate reductase 1, gamma (cytochrome b(NR)) subunit/rtT sRNA, processed from tyrT transcript
JC JC 1,293,032 IS1 (–) +8 bp 100% intergenic (‑110/‑488) hns ← / → tdk global DNA‑binding transcriptional dual regulator H‑NS/thymidine kinase/deoxyuridine kinase
RA 1,298,029 T→C 5.4% V31V (GTA→GTG adhE ← fused acetaldehyde‑CoA dehydrogenase/iron‑dependent alcohol dehydrogenase/pyruvate‑formate lyase deactivase
MC JC 1,299,499 Δ1,199 bp 100% intergenic (+254/‑485) ychE → / → oppA UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein
RA 1,328,762 C→T 7.8% W117* (TGG→TGA yciK ← putative EmrKY‑TolC system oxoacyl‑(acyl carrier protein) reductase
RA 1,364,196 A→G 9.1% E485G (GAA→GGA)  puuC → gamma‑glutamyl‑gamma‑aminobutyraldehyde dehydrogenase; succinate semialdehyde dehydrogenase
RA 1,367,341 T→A 8.0% E191V (GAA→GTA)  pspF ← psp operon transcriptional activator
RA 1,372,334 T→C 8.5% P142P (CCT→CCC ycjN → putative ABC sugar transporter periplasmic binding protein
RA 1,384,851 G→A 7.7% A245A (GCG→GCA ycjX → DUF463 family protein, puatative P‑loop NTPase
RA 1,398,145 C→T 7.1% V160M (GTG→ATG)  uspE ← stress‑induced protein
RA 1,401,040 C→T 11.7% G245E (GGA→GAA)  abgT ← p‑aminobenzoyl‑glutamate transporter; membrane protein
RA 1,425,743 Δ1 bp 5.8% pseudogene (114/453 nt) ydaY → pseudogene, Rac prophage;Phage or Prophage Related
RA 1,425,744 Δ1 bp 5.8% pseudogene (115/453 nt) ydaY → pseudogene, Rac prophage;Phage or Prophage Related
RA 1,444,337 C→T 10.2% D429D (GAC→GAT ydbH → putative membrane‑anchored protein, function unknown
RA 1,453,278 G→A 8.7% T122M (ACG→ATG)  paaZ ← oxepin‑CoA hydrolase and 3‑oxo‑5,6‑dehydrosuberyl‑CoA semialdehyde dehydrogenase
RA 1,456,664 C→T 8.9% R79C (CGT→TGT)  paaE → ring 1,2‑phenylacetyl‑CoA epoxidase, NAD(P)H oxidoreductase component
RA 1,456,682 C→A 9.3% R85S (CGC→AGC)  paaE → ring 1,2‑phenylacetyl‑CoA epoxidase, NAD(P)H oxidoreductase component
RA 1,595,156 T→C 18.2% pseudogene (2832/3861 nt) yneO ← pseudogene, AidA homolog
RA 1,678,456 G→A 6.4% S10S (TCG→TCA ydgH → DUF1471 family periplasmic protein
RA 1,806,340 C→T 100% intergenic (‑257/‑30) ydiY ← / → pfkB acid‑inducible putative outer membrane protein/6‑phosphofructokinase II
RA 1,806,446 G→A 66.7% G26E (GGA→GAA)  pfkB → 6‑phosphofructokinase II
RA 1,806,971 A→G 8.3% Q201R (CAG→CGG)  pfkB → 6‑phosphofructokinase II
RA 1,807,102 C→T 33.3% P245S (CCG→TCG)  pfkB → 6‑phosphofructokinase II
RA 1,862,926 C→G 7.8% G52G (GGC→GGG gapA → glyceraldehyde‑3‑phosphate dehydrogenase A
RA 1,865,682 G→C 6.6% intergenic (‑46/+44) yeaE ← / ← mipA aldo‑keto reductase, methylglyoxal to acetol, NADPH‑dependent/scaffolding protein for murein synthesizing machinery
RA 1,895,485 G→C 6.5% W227C (TGG→TGC pabB → aminodeoxychorismate synthase, subunit I
RA 1,895,487 A→T 6.7% Q228L (CAG→CTG)  pabB → aminodeoxychorismate synthase, subunit I
RA 1,895,489 G→C 6.7% A229P (GCA→CCA)  pabB → aminodeoxychorismate synthase, subunit I
RA 1,976,324 C→T 6.9% S272S (TCG→TCA motA ← proton conductor component of flagella motor
MC JC 1,978,503 Δ776 bp 100% insB1insA insB1, insA
JC JC 1,979,486 IS5 (+) +4 bp 100% intergenic (‑271/‑264) insA ← / → uspC IS1 repressor TnpA/universal stress protein
RA 1,982,585 C→A 6.8% R319L (CGT→CTT)  araH ← L‑arabinose ABC transporter permease
RA 2,014,548 A→G 9.3% P440P (CCA→CCG fliF → flagellar basal‑body MS‑ring and collar protein
RA 2,030,732 T→C 6.8% T63A (ACC→GCC)  vsr ← DNA mismatch endonuclease of very short patch repair
RA 2,049,040 C→T 7.2% T1368I (ACA→ATA)  yeeJ → putative adhesin
RA 2,094,624 C→T 9.3% S30S (AGC→AGT hisH → imidazole glycerol phosphate synthase, glutamine amidotransferase subunit
RA 2,096,628 A→G 5.9% Q5Q (CAA→CAG hisI → phosphoribosyl‑AMP cyclohydrolase and phosphoribosyl‑ATP pyrophosphatase
RA 2,126,946 T→C 6.8% Q82R (CAG→CGG)  wcaG ← bifunctional GDP‑fucose synthetase: GDP‑4‑dehydro‑6‑deoxy‑D‑mannose epimerase/ GDP‑4‑dehydro‑6‑L‑deoxygalactose reductase
RA 2,132,787 A→C 100% I204S (ATC→AGC)  wcaA ← putative glycosyl transferase
RA 2,139,301 A→G 5.6% E467G (GAA→GGA)  yegH → inner membrane protein
RA 2,168,486 T→C 5.7% intergenic (‑180/‑226) yegR ← / → yegS uncharacterized protein/phosphatidylglycerol kinase, metal‑dependent
RA 2,173,361 Δ2 bp 100% pseudogene (1‑2/442 nt) gatC ← pseudogene, galactitol‑specific enzyme IIC component of PTS;transport; Transport of small molecules: Carbohydrates, organic acids, alcohols; PTS system galactitol‑specific enzyme IIC
RA 2,177,992 C→T 6.4% E191E (GAG→GAA fbaB ← fructose‑bisphosphate aldolase class I
RA 2,191,239 T→C 5.4% K136R (AAG→AGG)  yehC ← putative periplasmic pilin chaperone
RA 2,223,493 G→A 5.6% A437T (GCT→ACT)  dld → D‑lactate dehydrogenase, FAD‑binding, NADH independent
RA 2,287,931 A→G 5.7% pseudogene (984/2525 nt) yejO ← pseudogene, autotransporter outer membrane homology;putative transport; Not classified; putative ATP‑binding component of a transport system
RA 2,384,136 A→G 5.2% G529G (GGT→GGC yfbK ← Von Willebrand factor domain putative lipoprotein
RA 2,388,885 C→A 5.6% P84H (CCC→CAC)  yfbO → uncharacterized protein
RA 2,416,941 A→G 5.4% intergenic (+50/‑140) pta → / → yfcC phosphate acetyltransferase/putative inner membrane transporter; C4‑dicarboxylate anaerobic carrier family protein
RA 2,416,943 C→G 5.3% intergenic (+52/‑138) pta → / → yfcC phosphate acetyltransferase/putative inner membrane transporter; C4‑dicarboxylate anaerobic carrier family protein
RA 2,416,945 C→T 5.3% intergenic (+54/‑136) pta → / → yfcC phosphate acetyltransferase/putative inner membrane transporter; C4‑dicarboxylate anaerobic carrier family protein
RA 2,445,728 A→G 7.4% D219D (GAT→GAC mepA ← murein DD‑endopeptidase
RA 2,512,774 C→T 7.9% intergenic (‑68/‑268) mntH ← / → nupC manganese/divalent cation transporter/nucleoside (except guanosine) transporter
RA 2,577,915 T→C 6.6% N155D (AAT→GAT)  maeB ← malic enzyme: putative oxidoreductase/phosphotransacetylase
RA 2,578,122 C→T 8.8% A86T (GCA→ACA)  maeB ← malic enzyme: putative oxidoreductase/phosphotransacetylase
RA 2,636,442 C→T 5.8% L305L (CTG→CTA der ← GTPase; multicopy suppressor of ftsJ
RA 2,696,460 G→A 6.0% A220A (GCG→GCA mltF → membrane‑bound lytic transglycosylase F, murein hydrolase
RA 2,777,379 A→G 5.7% T89A (ACT→GCT)  yfjZ → CP4‑57 prophage; antitoxin of the YpjF‑YfjZ toxin‑antitoxin system
RA 2,794,412 G→A 6.0% A54T (GCC→ACC)  gabP → gamma‑aminobutyrate transporter
RA 2,799,634 A→G 7.5% intergenic (+21/+16) alaE → / ← ygaC alanine exporter, alanine‑inducible, stress‑responsive/uncharacterized protein
RA 2,799,635 T→A 7.0% intergenic (+22/+15) alaE → / ← ygaC alanine exporter, alanine‑inducible, stress‑responsive/uncharacterized protein
RA 2,799,636 C→T 7.5% intergenic (+23/+14) alaE → / ← ygaC alanine exporter, alanine‑inducible, stress‑responsive/uncharacterized protein
RA 2,801,242 C→G 5.6% A93G (GCC→GGC)  nrdI → NrdEF cluster assembly flavodoxin
RA 2,801,260 G→A 5.7% R99Q (CGG→CAG)  nrdI → NrdEF cluster assembly flavodoxin
RA 2,857,488 G→A 7.1% L132L (CTG→CTA mutS → methyl‑directed mismatch repair protein
RA 2,875,564 C→T 6.4% G256S (GGT→AGT)  cysD ← sulfate adenylyltransferase, subunit 2
RA 2,926,340 G→A 5.6% M11I (ATG→ATA ygdH → UPF0717 family protein
RA 3,081,191 T→C 5.1% T149A (ACC→GCC)  tktA ← transketolase 1, thiamine triphosphate‑binding
RA 3,092,672 A→G 6.0% K265K (AAA→AAG gshB → glutathione synthetase
RA 3,105,959 G→A 5.2% T82T (ACG→ACA nupG → nucleoside transporter
RA 3,269,967 C→T 9.0% intergenic (+365/+249) yhaC → / ← rnpB pentapetide repeats‑related protein/RNase P, M1 RNA component
RA 3,269,968 G→T 10.3% intergenic (+366/+248) yhaC → / ← rnpB pentapetide repeats‑related protein/RNase P, M1 RNA component
RA 3,269,969 A→C 11.6% intergenic (+367/+247) yhaC → / ← rnpB pentapetide repeats‑related protein/RNase P, M1 RNA component
RA 3,269,970 A→G 9.0% intergenic (+368/+246) yhaC → / ← rnpB pentapetide repeats‑related protein/RNase P, M1 RNA component
RA 3,270,030 T→C 21.9% intergenic (+428/+186) yhaC → / ← rnpB pentapetide repeats‑related protein/RNase P, M1 RNA component
RA 3,299,323:1 +A 5.4% coding (350/519 nt) yhbO → stress‑resistance protein
RA 3,424,646 C→A 6.7% noncoding (2138/2904 nt) rrlD ← 23S ribosomal RNA of rrnD operon
RA 3,486,274 T→C 7.3% I52T (ATC→ACC)  crp → cAMP‑activated global transcription factor, mediator of catabolite repression
RA 3,522,154 Δ1 bp 5.1% coding (598/780 nt) hofM ← DNA catabolic putative pilus assembly protein
MC JC 3,559,357 Δ1,629 bp 100% [rtcR][glpG] [rtcR], glpR, glpR, [glpG]
RA 3,615,755 G→A 5.8% G172D (GGC→GAC)  nikB → nickel ABC transporter permease
RA 3,806,430 C→A 9.2% R213L (CGC→CTC)  waaG ← UDP‑glucose:(heptosyl)lipopolysaccharide alpha‑1,3‑glucosyltransferase; lipopolysaccharide core biosynthesis protein; lipopolysaccharide glucosyltransferase I
MC JC 3,815,859 Δ82 bp 100% [rph][rph] [rph], [rph]
MC JC 4,001,645 Δ5 bp 100% coding (220‑224/951 nt) corA → magnesium/nickel/cobalt transporter
RA 4,184,543 C→A 100% P1100Q (CCG→CAG)  rpoB → RNA polymerase, beta subunit
RA 4,283,232 A→C 5.0% intergenic (‑157/+21) yjcF ← / ← actP pentapeptide repeats protein/acetate transporter
RA 4,296,060 C→T 45.1% intergenic (+266/+376) gltP → / ← yjcO glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein
RA 4,296,380:1 +CG 100% intergenic (+586/+56) gltP → / ← yjcO glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein

Unassigned missing coverage evidence
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 2066296–2066593 2066593 1–298 14 [13] [12] 15 [insH1] [insH1]
* * ÷ NC_000913 3423795–3424234 3424513–3424238 5–719 14 [13] [13] 15 [rrlD] [rrlD]
* * ÷ NC_000913 4107560 4108498 939 14 [11] [11] 15 pfkA 6‑phosphofructokinase I

Unassigned new junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 127595 =70 (0.960)6 (0.090) 6/250 NT 8.4% intergenic (+8/‑317) aceF/lpd pyruvate dehydrogenase, dihydrolipoyltransacetylase component E2/dihydrolipoyl dehydrogenase; E3 component of pyruvate and 2‑oxoglutarate dehydrogenases complexes; glycine cleavage system L protein; dihydrolipoamide dehydrogenase
?NC_000913 127615 = 65 (0.950)intergenic (+28/‑297) aceF/lpd pyruvate dehydrogenase, dihydrolipoyltransacetylase component E2/dihydrolipoyl dehydrogenase; E3 component of pyruvate and 2‑oxoglutarate dehydrogenases complexes; glycine cleavage system L protein; dihydrolipoamide dehydrogenase
* ? NC_000913 274525 =NA (NA)3 (0.040) 3/252 NT NA noncoding (625/1195 nt) IS5 repeat region
?NC_000913 274559 = NA (NA)noncoding (591/1195 nt) IS5 repeat region
* ? NC_000913 = 31005672 (0.990)4 (0.060) 4/258 NT 5.4% intergenic (‑30/+28) ecpB/ecpA ECP production pilus chaperone/ECP pilin
?NC_000913 = 310060 69 (0.970)intergenic (‑34/+24) ecpB/ecpA ECP production pilus chaperone/ECP pilin
* ? NC_000913 349884 =58 (0.790)5 (0.070) 5/252 NT 8.3% noncoding (280/365 nt) REP25 (repetitive extragenic palindromic) element; contains 8 REP sequences REP25 (repetitive extragenic palindromic) element; contains 8 REP sequences
?NC_000913 349916 = 55 (0.790)noncoding (312/365 nt) REP25 (repetitive extragenic palindromic) element; contains 8 REP sequences REP25 (repetitive extragenic palindromic) element; contains 8 REP sequences
* ? NC_000913 = 381669NA (NA)4 (0.060) 3/252 NT NA noncoding (410/1331 nt) IS2 repeat region
?NC_000913 = 381695 NA (NA)noncoding (436/1331 nt) IS2 repeat region
* ? NC_000913 = 758508NA (NA)3 (0.040) 3/252 NT NA noncoding (100/118 nt) RIP67 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site RIP67 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site
?NC_000913 = 758519 NA (NA)noncoding (111/118 nt) RIP67 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site RIP67 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site
* ? NC_000913 1207790 =5 (0.070)27 (0.420) 26/234 NT 65.5% coding (290/630 nt) stfP e14 prophage; uncharacterized protein
?NC_000913 1209619 = 24 (0.370)pseudogene (1/501 nt) stfE pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related
* ? NC_000913 = 12078056 (0.080)37 (0.580) 29/234 NT 71.7% coding (305/630 nt) stfP e14 prophage; uncharacterized protein
?NC_000913 = 1209602 24 (0.370)pseudogene (18/501 nt) stfE pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related
* ? NC_000913 = 156891451 (0.700)3 (0.040) 3/244 NT 6.0% intergenic (‑91/+40) yddW/gadC liprotein, glycosyl hydrolase homolog/glutamate:gamma‑aminobutyric acid antiporter
?NC_000913 = 1568919 47 (0.700)intergenic (‑96/+35) yddW/gadC liprotein, glycosyl hydrolase homolog/glutamate:gamma‑aminobutyric acid antiporter
* ? NC_000913 = 207719547 (0.640)3 (0.040) 3/258 NT 6.1% coding (84/369 nt) cbeA CP4‑44 prophage; cytoskeleton bundling‑enhancing factor A; CbtA antitoxin
?NC_000913 = 2077202 46 (0.650)coding (91/369 nt) cbeA CP4‑44 prophage; cytoskeleton bundling‑enhancing factor A; CbtA antitoxin
* ? NC_000913 2423706 =74 (1.010)4 (0.060) 4/254 NT 5.3% intergenic (‑167/+30) yfcI/hisP transposase_31 family protein/histidine ABC transporter ATPase
?NC_000913 2423730 = 71 (1.020)intergenic (‑191/+6) yfcI/hisP transposase_31 family protein/histidine ABC transporter ATPase
* ? NC_000913 = 308383979 (1.080)5 (0.070) 4/248 NT 6.0% intergenic (‑42/+96) speB/speA agmatinase/biosynthetic arginine decarboxylase, PLP‑binding
?NC_000913 = 3083858 83 (1.220)intergenic (‑61/+77) speB/speA agmatinase/biosynthetic arginine decarboxylase, PLP‑binding
* ? NC_000913 = 316148873 (1.000)5 (0.070) 5/250 NT 6.7% coding (1182/1413 nt) ftsP septal ring component that protects the divisome from stress; multicopy suppressor of ftsI(Ts)
?NC_000913 = 3161513 70 (1.020)coding (1157/1413 nt) ftsP septal ring component that protects the divisome from stress; multicopy suppressor of ftsI(Ts)
* ? NC_000913 3163644 =NA (NA)4 (0.060) 3/248 NT NA noncoding (1/30 nt) REP223 (repetitive extragenic palindromic) element; contains 1 REP sequences REP223 (repetitive extragenic palindromic) element; contains 1 REP sequences
?NC_000913 3163674 = NA (NA)intergenic (‑193/+41) plsC/parC 1‑acyl‑sn‑glycerol‑3‑phosphate acyltransferase/DNA topoisomerase IV, subunit A
* ? NC_000913 = 353449670 (0.960)4 (0.060) 4/244 NT 5.4% intergenic (+56/+20) pck/envZ phosphoenolpyruvate carboxykinase [ATP]/sensory histidine kinase in two‑component regulatory system with OmpR
?NC_000913 = 3534502 76 (1.130)intergenic (+62/+14) pck/envZ phosphoenolpyruvate carboxykinase [ATP]/sensory histidine kinase in two‑component regulatory system with OmpR
* ? NC_000913 = 427442373 (1.000)4 (0.060) 3/254 NT 5.1% coding (299/537 nt) ssb single‑stranded DNA‑binding protein
?NC_000913 = 4274430 78 (1.120)coding (306/537 nt) ssb single‑stranded DNA‑binding protein