mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.32.0 revision 6ff6de7d1b87
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | ||||||
|---|---|---|---|---|---|---|
| evidence | position | mutation | freq | annotation | gene | description |
| RA | 94,850 | T→C | 3.3% | V67V (GTT→GTC) | murF → | UDP‑N‑acetylmuramoyl‑tripeptide:D‑alanyl‑D‑ alanine ligase |
| JC | 136,615 | Δ5 bp | 3.5% | coding (299‑303/348 nt) | yacC ← | PulS_OutS family protein |
| RA | 165,960 | C→T | 3.2% | Q411* (CAG→TAG) | mrcB → | fused glycosyl transferase and transpeptidase |
| RA | 201,088 | Δ1 bp | 3.0% | coding (118/1026 nt) | lpxD → | UDP‑3‑O‑(3‑hydroxymyristoyl)‑glucosamine N‑acyltransferase |
| MC JC | 257,908 | Δ776 bp | 100% | [crl] | [crl] | |
| RA | 286,391 | Δ1 bp | 3.4% | coding (997/1383 nt) | yagG → | CP4‑6 prophage, putative sugar transporter |
| RA | 363,169 | A→G | 3.2% | L4S (TTA→TCA) | lacY ← | lactose permease |
| RA | 439,812 | A→G | 3.7% | H122H (CAT→CAC) | dxs ← | 1‑deoxyxylulose‑5‑phosphate synthase, thiamine triphosphate‑binding, FAD‑requiring |
| RA | 572,774 | G→A | 3.3% | Q103Q (CAG→CAA) | ybcN → | DLP12 prophage, uncharacterized protein |
| RA | 623,367 | Δ1 bp | 2.9% | coding (1068/1251 nt) | entS → | enterobactin exporter, iron‑regulated |
| RA | 701,374 | C→T | 7.4% | R74H (CGC→CAC) | nagC ← | N‑acetylglucosamine‑inducible nag divergent operon transcriptional repressor |
| RA | 701,554 | A→G | 5.2% | L14P (CTC→CCC) | nagC ← | N‑acetylglucosamine‑inducible nag divergent operon transcriptional repressor |
| RA | 702,331 | Δ1 bp | 6.5% | coding (421/1149 nt) | nagA ← | N‑acetylglucosamine‑6‑phosphate deacetylase |
| RA | 736,928 | T→G | 3.5% | pseudogene (104/1137 nt) | ybfL → | pseudogene, DDE domain transposase family,putative factor, Not classified, putative receptor protein |
| RA | 772,687 | T→C | 3.7% | S410S (AGT→AGC) | cydA → | cytochrome d terminal oxidase, subunit I |
| RA | 851,329 | Δ1 bp | 2.9% | coding (1269/1584 nt) | opgE ← | OPG biosynthetic transmembrane phosphoethanolamine transferase |
| RA | 1,047,148 | Δ1 bp | 2.7% | coding (798/2097 nt) | gfcD ← | putative O‑antigen capsule production periplasmic protein |
| RA | 1,051,766 | A→G | 3.9% | intergenic (+93/‑81) | cspG → / → ymcE | cold shock protein homolog, cold‑inducible/cold shock gene |
| RA | 1,158,171 | Δ1 bp | 5.9% | coding (303/1434 nt) | ptsG → | fused glucose‑specific PTS enzymes: IIB component/IIC component |
| JC | 1,159,286:1 | +GTA | 21.4% | coding (1418/1434 nt) | ptsG → | fused glucose‑specific PTS enzymes: IIB component/IIC component |
| RA | 1,269,474 | A→T | 4.0% | intergenic (+85/+229) | rdlA → / ← ldrB | sRNA antisense regulator affects LdrA translation, proposed addiction module in LDR‑A repeat, with toxic peptide LdrA/toxic polypeptide, small |
| RA | 1,269,884 | C→T | 3.7% | noncoding (27/66 nt) | rdlB → | sRNA antisense regulator affects LdrB translation, proposed addiction module in LDR‑B repeat, with toxic peptide LdrB |
| MC JC | 1,299,499 | Δ1,199 bp | 100% | intergenic (+254/‑485) | ychE → / → oppA | UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein |
| JC | 1,326,599 | Δ36 bp | 9.4% | coding (1854‑1889/1896 nt) | yciQ → | enhancer of membrane protein expression, putative inner membrane protein |
| RA | 1,466,201 | T→C | 5.1% | pseudogene (810/2513 nt) | ydbA → | pseudogene, autotransporter homolog, interrupted by IS2 and IS30 |
| RA | 1,466,210 | G→A | 4.5% | pseudogene (819/2513 nt) | ydbA → | pseudogene, autotransporter homolog, interrupted by IS2 and IS30 |
| RA | 1,466,258 | G→C | 5.0% | pseudogene (867/2513 nt) | ydbA → | pseudogene, autotransporter homolog, interrupted by IS2 and IS30 |
| RA | 1,490,727 | C→T | 3.6% | intergenic (‑14/‑175) | gapC ← / → cybB | pseudogene, GAP dehydrogenase, glyceraldehyde‑3‑phosphate dehydrogenase (second fragment)/cytochrome b561 |
| RA | 1,560,522 | Δ1 bp | 3.4% | coding (408/1023 nt) | ddpB ← | D,D‑dipeptide ABC transporter permease |
| RA | 1,708,805 | T→C | 21.4% | R629R (CGT→CGC) | rsxC → | SoxR iron‑sulfur cluster reduction factor component, putative membrane‑associated NADH oxidoreductase of electron transport complex |
| RA | 1,970,383 | Δ1 bp | 3.2% | coding (602/1602 nt) | tap ← | methyl‑accepting protein IV |
| MC JC | 1,978,503 | Δ776 bp | 100% | insB1–insA | insB1, insA | |
| RA | 2,132,787 | A→C | 100% | I204S (ATC→AGC) | wcaA ← | putative glycosyl transferase |
| RA | 2,133,164:1 | +G | 3.2% | coding (234/840 nt) | wcaA ← | putative glycosyl transferase |
| RA | 2,156,595:1 | +T | 2.7% | coding (1333/3123 nt) | mdtB → | multidrug efflux system, subunit B |
| RA | 2,156,595:2 | +C | 2.7% | coding (1333/3123 nt) | mdtB → | multidrug efflux system, subunit B |
| RA | 2,204,384 | Δ1 bp | 4.2% | intergenic (+97/‑210) | yehK → / → yehL | uncharacterized protein/putative hexameric AAA+ MoxR family ATPase |
| RA | 2,304,520 | G→T | 6.6% | intergenic (+129/+586) | eco → / ← mqo | ecotin, a serine protease inhibitor/malate dehydrogenase, FAD/NAD(P)‑binding domain |
| RA | 2,304,521 | G→C | 6.1% | intergenic (+130/+585) | eco → / ← mqo | ecotin, a serine protease inhibitor/malate dehydrogenase, FAD/NAD(P)‑binding domain |
| RA | 2,304,535 | A→G | 6.9% | intergenic (+144/+571) | eco → / ← mqo | ecotin, a serine protease inhibitor/malate dehydrogenase, FAD/NAD(P)‑binding domain |
| RA | 2,304,538 | C→T | 5.3% | intergenic (+147/+568) | eco → / ← mqo | ecotin, a serine protease inhibitor/malate dehydrogenase, FAD/NAD(P)‑binding domain |
| RA | 2,304,547 | C→T | 6.4% | intergenic (+156/+559) | eco → / ← mqo | ecotin, a serine protease inhibitor/malate dehydrogenase, FAD/NAD(P)‑binding domain |
| RA | 2,304,565 | C→T | 6.4% | intergenic (+174/+541) | eco → / ← mqo | ecotin, a serine protease inhibitor/malate dehydrogenase, FAD/NAD(P)‑binding domain |
| RA | 2,304,791 | C→T | 8.5% | intergenic (+400/+315) | eco → / ← mqo | ecotin, a serine protease inhibitor/malate dehydrogenase, FAD/NAD(P)‑binding domain |
| RA | 2,304,796 | T→C | 13.1% | intergenic (+405/+310) | eco → / ← mqo | ecotin, a serine protease inhibitor/malate dehydrogenase, FAD/NAD(P)‑binding domain |
| RA | 2,314,714 | C→A | 10.4% | A410E (GCG→GAG) | rcsD → | phosphotransfer intermediate protein in two‑component regulatory system with RcsBC |
| RA | 2,342,529 | T→C | 3.5% | K547E (AAA→GAA) | yfaL ← | adhesin |
| RA | 2,354,399 | A→G | 4.9% | D46G (GAT→GGT) | glpB → | anaerobic sn‑glycerol‑3‑phosphate dehydrogenase membrane anchor subunit |
| RA | 2,427,316 | Δ1 bp | 3.1% | coding (474/783 nt) | argT ← | lysine/arginine/ornithine transporter subunit |
| JC | 2,765,454 | (TATGGCAC)6→5 | 6.8% | intergenic (‑303/+50) | yfjL ← / ← yfjM | CP4‑57 putative defective prophage, DUF4297/DUF1837 polymorphic toxin family protein/CP4‑57 prophage, uncharacterized protein |
| RA | 2,784,549 | T→C | 3.5% | pseudogene (461/1374 nt) | ypjC ← | pseudogene |
| RA | 2,804,603 | T→C | 3.3% | intergenic (+144/‑210) | nrdF → / → proV | ribonucleoside‑diphosphate reductase 2, beta subunit, ferritin‑like protein/glycine betaine/proline ABC transporter periplasmic binding protein |
| RA | 3,169,993 | C→T | 2.5% | G56G (GGC→GGT) | qseB → | quorum sensing DNA‑binding response regulator in two‑component regulatory system with QseC |
| RA | 3,579,887 | A→T | 3.2% | Y306* (TAT→TAA) | yhhX ← | putative oxidoreductase |
| RA | 3,608,681 | T→C | 11.7% | intergenic (+33/+69) | zntA → / ← tusA | zinc, cobalt and lead efflux system/mnm(5)‑s(2)U34‑tRNA 2‑thiolation sulfurtransferase |
| RA | 3,742,053 | C→T | 2.8% | G160D (GGC→GAC) | yiaJ ← | transcriptional repressor for the yiaKLMNO‑lyxK‑sgbHUE operon |
| RA | 3,812,319 | T→C | 3.7% | L80L (TTA→TTG) | yicR ← | UPF0758 family protein |
| MC JC | 3,815,858 | Δ82 bp | 100% | [rph]–[rph] | [rph], [rph] | |
| MC JC | 3,909,311 | Δ774 bp | 100% | [pstA]–[pstC] | [pstA], [pstC] | |
| RA | 3,958,514 | T→A | 3.2% | D182E (GAT→GAA) | ilvC → | ketol‑acid reductoisomerase, NAD(P)‑binding |
| JC | 4,001,644 | Δ5 bp | 100% | coding (220‑224/951 nt) | corA → | magnesium/nickel/cobalt transporter |
| RA | 4,171,647 | A→C | 100% | noncoding (12/120 nt) | rrfB → | 5S ribosomal RNA of rrnB operon |
| RA | 4,184,542 | C→A | 100% | P1100Q (CCG→CAG) | rpoB → | RNA polymerase, beta subunit |
| JC | 4,204,931:1 | (CAC)2→3 | 3.2% | coding (1000/1290 nt) | purD ← | phosphoribosylglycinamide synthetase phosphoribosylamine‑glycine ligase |
| RA | 4,283,001 | G→A | 3.1% | P25L (CCA→CTA) | yjcF ← | pentapeptide repeats protein |
| RA | 4,295,833 | T→C | 3.8% | intergenic (+40/+604) | gltP → / ← yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| RA | 4,296,189 | A→G | 44.7% | intergenic (+396/+248) | gltP → / ← yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| RA | 4,296,190 | A→C | 40.9% | intergenic (+397/+247) | gltP → / ← yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| RA | 4,325,949 | A→G | 5.9% | intergenic (‑207/+451) | yjdN ← / ← yjdM | metalloprotein superfamily protein/zinc‑ribbon family protein |
| RA | 4,326,248 | C→T | 3.9% | intergenic (‑506/+152) | yjdN ← / ← yjdM | metalloprotein superfamily protein/zinc‑ribbon family protein |
| RA | 4,502,370:1 | +T | 2.5% | coding (1063/1329 nt) | insG ← | IS4 transposase |
| RA | 4,502,370:2 | +C | 2.5% | coding (1063/1329 nt) | insG ← | IS4 transposase |
| RA | 4,635,825 | Δ1 bp | 2.8% | coding (304/474 nt) | creA → | putative periplasmic protein |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 4110683 | 4111524 | 842 | 54 [52] | [52] 54 | [cdh]–tpiA | [cdh], tpiA |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 243009 | 123 (0.960) | 5 (0.040) | 5/496 | NT | 3.9% | coding (295/2445 nt) | fadE | acyl coenzyme A dehydrogenase |
| ? | NC_000913 | = 243192 | 128 (1.030) | coding (112/2445 nt) | fadE | acyl coenzyme A dehydrogenase | |||||
| * | ? | NC_000913 | 257908 = | NA (NA) | 144 (1.130) | 87/510 | NT | 98.6% | intergenic (+9/‑768) | crl/crl | pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator,regulator, Surface structures, transcriptional regulator of cryptic csgA gene for curli surface fibers/pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator,regulator, Surface structures, transcriptional regulator of cryptic csgA gene for curli surface fibers |
| ? | NC_000913 | = 1293039 | 2 (0.020) | intergenic (‑117/‑488) | hns/tdk | global DNA‑binding transcriptional dual regulator H‑NS/thymidine kinase/deoxyuridine kinase | |||||
| * | ? | NC_000913 | 273955 = | NA (NA) | 5 (0.040) | 5/510 | NT | 6.0% | intergenic (+1/+146) | ykfC/insH1 | CP4‑6 prophage, conserved protein,Phage or Prophage Related/IS5 transposase and trans‑activator |
| ? | NC_000913 | = 702474 | 78 (0.610) | coding (278/1149 nt) | nagA | N‑acetylglucosamine‑6‑phosphate deacetylase | |||||
| * | ? | NC_000913 | = 366099 | 108 (0.850) | 3 (0.020) | 3/488 | NT | 2.7% | coding (207/3075 nt) | lacZ | beta‑D‑galactosidase |
| ? | NC_000913 | = 366105 | 113 (0.920) | coding (201/3075 nt) | lacZ | beta‑D‑galactosidase | |||||
| * | ? | NC_000913 | 391708 = | NA (NA) | 3 (0.020) +GTGCC |
3/500 | NT | NA | pseudogene (1458/1458 nt) | yaiT | pseudogene, autotransporter family,putative structure, Not classified, interrupted by IS3, putative flagellin structural protein |
| ? | NC_000913 | = 392963 | NA (NA) | intergenic (‑62/‑7) | insE1/yaiT | IS3 transposase A/pseudogene, autotransporter family,putative structure, Not classified, interrupted by IS3, putative flagellin structural protein | |||||
| * | ? | NC_000913 | 453557 = | 109 (0.850) | 4 (0.030) | 4/496 | NT | 3.7% | intergenic (‑12/+32) | ampG/yajG | muropeptide transporter/putative lipoprotein |
| ? | NC_000913 | 453577 = | 104 (0.840) | intergenic (‑32/+12) | ampG/yajG | muropeptide transporter/putative lipoprotein | |||||
| * | ? | NC_000913 | 702318 = | 101 (0.790) | 5 (0.040) | 5/510 | NT | 3.7% | coding (434/1149 nt) | nagA | N‑acetylglucosamine‑6‑phosphate deacetylase |
| ? | NC_000913 | 4502091 = | 158 (1.240) | intergenic (+501/+13) | yjgZ/insG | uncharacterized protein/IS4 transposase | |||||
| * | ? | NC_000913 | 934998 = | 112 (0.880) | 3 (0.020) | 3/500 | NT | 2.8% | coding (1775/3990 nt) | ftsK | DNA translocase at septal ring sorting daughter chromsomes |
| ? | NC_000913 | 935033 = | 97 (0.770) | coding (1810/3990 nt) | ftsK | DNA translocase at septal ring sorting daughter chromsomes | |||||
| * | ? | NC_000913 | 1159285 = | 81 (0.630) | 4 (0.030) | 4/506 | NT | 4.7% | coding (1417/1434 nt) | ptsG | fused glucose‑specific PTS enzymes: IIB component/IIC component |
| ? | NC_000913 | = 1469238 | NA (NA) | intergenic (‑89/‑3) | insC1/ydbA | IS2 repressor TnpA/pseudogene, autotransporter homolog, interrupted by IS2 and IS30 | |||||
| * | ? | NC_000913 | = 1159291 | 79 (0.620) | 8 (0.060) | 8/510 | NT | 9.2% | coding (1423/1434 nt) | ptsG | fused glucose‑specific PTS enzymes: IIB component/IIC component |
| ? | NC_000913 | = 1651548 | NA (NA) | intergenic (+11/‑3) | insD1/intQ | IS2 transposase TnpB,IS, phage, Tn, Transposon‑related functions, extrachromosomal, transposon related/pseudogene, Qin prophage, phage integrase family,Phage or Prophage Related | |||||
| * | ? | NC_000913 | 1207790 = | 79 (0.620) | 35 (0.290) | 32/478 | NT | 30.4% | coding (290/630 nt) | stfP | e14 prophage, uncharacterized protein |
| ? | NC_000913 | 1209619 = | 86 (0.720) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage, side tail fiber protein fragment family,Phage or Prophage Related | |||||
| * | ? | NC_000913 | = 1207805 | 81 (0.630) | 32 (0.270) | 26/478 | NT | 28.3% | coding (305/630 nt) | stfP | e14 prophage, uncharacterized protein |
| ? | NC_000913 | = 1209602 | 86 (0.720) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage, side tail fiber protein fragment family,Phage or Prophage Related | |||||
| * | ? | NC_000913 | 1293032 = | 2 (0.020) | 124 (0.970) | 79/510 | NT | 98.4% | intergenic (‑110/‑495) | hns/tdk | global DNA‑binding transcriptional dual regulator H‑NS/thymidine kinase/deoxyuridine kinase |
| ? | NC_000913 | = 1979270 | NA (NA) | intergenic (‑55/‑483) | insA/uspC | IS1 repressor TnpA/universal stress protein | |||||
| * | ? | NC_000913 | 1314673 = | 89 (0.700) | 3 (0.020) | 3/492 | NT | 3.5% | intergenic (+15/+45) | ompW/yciE | outer membrane protein W/putative rubrerythrin/ferritin‑like metal‑binding protein |
| ? | NC_000913 | 1314694 = | 80 (0.650) | intergenic (+36/+24) | ompW/yciE | outer membrane protein W/putative rubrerythrin/ferritin‑like metal‑binding protein | |||||
| * | ? | NC_000913 | 1503511 = | 104 (0.810) | 4 (0.030) | 4/500 | NT | 3.6% | pseudogene (139/432 nt) | insP | pseudogene, IS609 transposase A,IS, phage, Tn, Transposon‑related functions, extrachromosomal, transposon related |
| ? | NC_000913 | 1504443 = | 111 (0.890) | coding (727/1149 nt) | insQ | IS609 transposase B | |||||
| * | ? | NC_000913 | 1979486 = | 0 (0.000) | 83 (0.650) | 58/510 | NT | 100% | intergenic (‑271/‑267) | insA/uspC | IS1 repressor TnpA/universal stress protein |
| ? | NC_000913 | 2101749 = | NA (NA) | intergenic (‑5/+146) | wbbL/insH1 | pseudogene, lipopolysaccharide biosynthesis protein/IS5 transposase and trans‑activator | |||||
| * | ? | NC_000913 | = 1979489 | 0 (0.000) | 113 (0.880) | 70/510 | NT | 100% | intergenic (‑274/‑264) | insA/uspC | IS1 repressor TnpA/universal stress protein |
| ? | NC_000913 | = 2290111 | NA (NA) | intergenic (‑32/+1) | insH1/yejO | IS5 transposase and trans‑activator/pseudogene, autotransporter outer membrane homology,putative transport, Not classified, putative ATP‑binding component of a transport system | |||||
| * | ? | NC_000913 | = 2290110 | NA (NA) | 4 (0.030) | 4/508 | NT | 4.1% | intergenic (‑31/+2) | insH1/yejO | IS5 transposase and trans‑activator/pseudogene, autotransporter outer membrane homology,putative transport, Not classified, putative ATP‑binding component of a transport system |
| ? | NC_000913 | 2976723 = | 94 (0.740) | coding (127/1032 nt) | galR | galactose‑inducible d‑galactose regulon transcriptional repressor, autorepressor | |||||
| * | ? | NC_000913 | = 2498106 | 133 (1.040) | 4 (0.030) | 3/488 | NT | 3.8% | coding (188/1239 nt) | alaC | glutamate‑pyruvate aminotransferase, glutamic‑pyruvic transaminase (GPT), alanine transaminase |
| ? | NC_000913 | = 2498313 | 77 (0.630) | intergenic (‑20/‑356) | alaC/ypdA | glutamate‑pyruvate aminotransferase, glutamic‑pyruvic transaminase (GPT), alanine transaminase/sensor kinase regulating yhjX, pyruvate‑responsive YpdAB two‑component system | |||||
| * | ? | NC_000913 | = 2608067 | 126 (0.990) | 6 (0.050) | 6/496 | NT | 4.5% | coding (1153/1581 nt) | hyfF | hydrogenase 4, membrane subunit |
| ? | NC_000913 | = 2608077 | 133 (1.070) | coding (1163/1581 nt) | hyfF | hydrogenase 4, membrane subunit | |||||
| * | ? | NC_000913 | = 2713827 | 109 (0.850) | 3 (0.020) | 3/488 | NT | 2.9% | coding (934/1335 nt) | srmB | ATP‑dependent RNA helicase |
| ? | NC_000913 | = 2713906 | 94 (0.770) | coding (1013/1335 nt) | srmB | ATP‑dependent RNA helicase | |||||
| * | ? | NC_000913 | 2796363 = | 132 (1.030) | 5 (0.040) | 5/490 | NT | 3.8% | coding (422/450 nt) | ygaU | uncharacterized protein |
| ? | NC_000913 | 2796384 = | 124 (1.010) | coding (401/450 nt) | ygaU | uncharacterized protein | |||||
| * | ? | NC_000913 | 2833078 = | 141 (1.100) | 4 (0.030) | 4/492 | NT | 3.0% | coding (605/1440 nt) | norV | anaerobic nitric oxide reductase flavorubredoxin |
| ? | NC_000913 | 2833217 = | 126 (1.020) | coding (744/1440 nt) | norV | anaerobic nitric oxide reductase flavorubredoxin | |||||
| * | ? | NC_000913 | = 3041641 | 142 (1.110) | 4 (0.030) | 4/486 | NT | 3.1% | coding (331/981 nt) | ygfZ | iron‑sulfur cluster repair protein, plumbagin resistance |
| ? | NC_000913 | = 3042743 | 116 (0.950) | coding (404/660 nt) | yqfA | hemolysin III family HylIII inner membrane protein | |||||
| * | ? | NC_000913 | 3419953 = | 143 (1.120) | 5 (0.040) | 3/494 | NT | 3.6% | pseudogene (849/960 nt) | yhdW | pseudogene, ABC transporter periplasmic binding protein family,putative transport, Not classified, putative periplasmic binding transport protein, periplasmic‑binding component of ABC superfamily |
| ? | NC_000913 | 3420126 = | 127 (1.030) | intergenic (+62/‑6) | yhdW/yhdX | pseudogene, ABC transporter periplasmic binding protein family,putative transport, Not classified, putative periplasmic binding transport protein, periplasmic‑binding component of ABC superfamily/putative amino acid ABC transporter permease | |||||
| * | ? | NC_000913 | 4295831 = | NA (NA) | 10 (0.090) | 5/432 | NT | NA | intergenic (+38/+606) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| ? | NC_000913 | = 4296395 | NA (NA) | noncoding (562/602 nt) | RIP321 (repetitive extragenic palindromic) element, contains 11 REP sequences and 4 IHF sites | RIP321 (repetitive extragenic palindromic) element, contains 11 REP sequences and 4 IHF sites | |||||
| * | ? | NC_000913 | 4319452 = | 150 (1.170) | 3 (0.020) | 3/490 | NT | 2.8% | coding (156/846 nt) | phnJ | carbon‑phosphorus lyase, SAM‑dependent |
| ? | NC_000913 | 4320123 = | 66 (0.540) | coding (542/1065 nt) | phnI | ribophosphonate triphosphate synthase complex putative catalytic subunit | |||||
| * | ? | NC_000913 | 4325843 = | NA (NA) | 15 (0.120) +AAC |
5/504 | NT | NA | noncoding (41/583 nt) | REP325 (repetitive extragenic palindromic) element, contains 12 REP sequences | REP325 (repetitive extragenic palindromic) element, contains 12 REP sequences |
| ? | NC_000913 | = 4326339 | NA (NA) | noncoding (537/583 nt) | REP325 (repetitive extragenic palindromic) element, contains 12 REP sequences | REP325 (repetitive extragenic palindromic) element, contains 12 REP sequences | |||||