mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.24rc7
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | change | freq | score | reads | annotation | genes | product | ||
| * | NC_000913 | 3,838,915 | 0 | A→T | 13.3% | 53.1 ‑64.5 0.0 | 603 | Y223F (TAT→TTT) | yicL | EamA family inner membrane putative transporter |
| * | NC_000913 | 1,101,734 | 0 | G→T | 13.4% | 50.5 ‑58.5 0.0 | 523 | Q132K (CAA→AAA) | csgF | curli nucleation outer membrane protein |
| * | NC_000913 | 821,444 | 0 | G→T | 12.6% | 40.0 ‑48.9 0.0 | 502 | G218W (GGG→TGG) | ybhM | BAX Inhibitor‑1 family inner membrane protein |
| * | NC_000913 | 3,838,919 | 0 | G→T | 13.9% | 39.1 ‑67.5 0.0 | 598 | L224F (TTG→TTT) | yicL | EamA family inner membrane putative transporter |
| * | NC_000913 | 3,274,928 | 0 | A→T | 12.7% | 38.6 ‑53.5 0.0 | 506 | intergenic (‑21/‑354) | garP/garD | putative (D)‑galactarate transporter/D‑galactarate dehydrogenase |
| * | NC_000913 | 1,101,739 | 0 | C→A | 10.9% | 36.4 ‑46.3 ‑0.0 | 516 | G130V (GGT→GTT) | csgF | curli nucleation outer membrane protein |
| * | NC_000913 | 2,551,265 | 0 | C→A | 10.6% | 35.1 ‑47.3 0.0 | 539 | intergenic (‑49/+12) | yfeY/yfeZ | RpoE‑regulated lipoprotein/inner membrane protein |
| * | NC_000913 | 3,274,943 | 0 | A→T | 11.1% | 30.1 ‑44.1 0.0 | 487 | intergenic (‑36/‑339) | garP/garD | putative (D)‑galactarate transporter/D‑galactarate dehydrogenase |
| * | NC_000913 | 322,652 | 0 | T→A | 13.2% | 29.9 ‑59.8 0.0 | 598 | N105K (AAT→AAA) | ykgF | ferridoxin‑like LutB family protein; putative electron transport chain YkgEFG component |
| * | NC_000913 | 3,274,911 | 0 | A→T | 12.1% | 29.8 ‑50.7 0.0 | 495 | intergenic (‑4/‑371) | garP/garD | putative (D)‑galactarate transporter/D‑galactarate dehydrogenase |
| * | NC_000913 | 3,499,692 | 0 | A→T | 10.1% | 26.6 ‑41.2 0.0 | 508 | intergenic (+77/‑218) | yhfL/frlA | small lipoprotein/putative fructoselysine transporter |
| * | NC_000913 | 1,478,386 | 0 | C→T | 10.0% | 25.2 ‑47.3 0.0 | 510 | S54L (TCA→TTA) | ynbB | putative CDP‑diglyceride synthase |
| * | NC_000913 | 1,566,340 | 0 | T→A | 10.8% | 22.9 ‑40.0 0.0 | 490 | K267N (AAA→AAT) | dosC | diguanylate cyclase, cold‑ and stationary phase‑induced oxygen‑dependent biofilm regulator |
| * | NC_000913 | 1,825,240 | 0 | A→G | 10.4% | 20.5 ‑41.2 0.0 | 551 | I129T (ATC→ACC) | spy | periplasmic ATP‑independent protein refolding chaperone, stress‑induced |
| * | NC_000913 | 2,615,827 | 0 | T→A | 10.2% | 19.5 ‑34.8 0.0 | 518 | I19F (ATT→TTT) | yfgO | putative UPF0118 family inner membrane permease |
| * | NC_000913 | 903,873 | 0 | C→G | 10.0% | 19.3 ‑42.3 0.0 | 530 | intergenic (‑139/+79) | artP/ybjP | arginine ABC transporter ATPase/lipoprotein |
| * | NC_000913 | 3,413,163 | 0 | G→T | 10.9% | 18.0 ‑52.0 0.0 | 595 | A101A (GCC→GCA) | acrS | acrAB operon transcriptional repressor |
| * | NC_000913 | 1,825,265 | 0 | C→T | 10.0% | 14.1 ‑44.6 0.0 | 560 | E121K (GAA→AAA) | spy | periplasmic ATP‑independent protein refolding chaperone, stress‑induced |
| * | NC_000913 | 2,899,900 | 0 | T→G | 10.2% | 12.4 ‑43.8 0.0 | 588 | N125T (AAC→ACC) | ygcW | putative SDR family oxidoreductase |
| * | NC_000913 | 4,568,608 | 0 | C→A | 11.0% | 10.9 ‑50.6 ‑0.2 | 520 | intergenic (‑89/‑390) | mdtM/yjiP | multidrug efflux system protein/pseudogene, transposase_31 family protein |
| * | NC_000913 | 279,398 | 0 | A→C | 100.0% | 0.9 | 1 | V95G (GTG→GGG) | insB1 | IS1 transposase B |
| * | NC_000913 | 15,601 | 0 | G→C | 100.0% | 0.0 | 1 | G53R (GGG→CGG) | insL1 | IS186 transposase |
| * | NC_000913 | 15,607 | 0 | A→G | 100.0% | ‑0.1 | 1 | M55V (ATG→GTG) | insL1 | IS186 transposase |
| Marginal mixed read alignment evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | change | freq | score | reads | annotation | genes | product | ||
| * | NC_000913 | 283,940 | 0 | A→G | 39.6% | 14.2 ‑2.1 0.0 | 111 | E247G (GAG→GGG) | yagF | CP4‑6 prophage; dehydratase family protein |
| * | NC_000913 | 686,077 | 0 | G→C | 21.5% | 10.3 ‑1.9 ‑0.0 | 121 | A198G (GCG→GGG) | gltJ | glutamate/aspartate ABC transporter permease |
| * | NC_000913 | 884,184 | 0 | A→G | 22.4% | 18.9 ‑0.1 0.0 | 334 | E171G (GAG→GGG) | mdfA | multidrug efflux system protein |
| * | NC_000913 | 2,151,589 | 0 | A→T | 10.7% | 15.4 ‑1.8 0.0 | 228 | L135F (TTA→TTT) | yegJ | uncharacterized protein |
| * | NC_000913 | 2,151,608 | 0 | G→A | 17.5% | 24.9 ‑2.7 0.0 | 217 | E142K (GAA→AAA) | yegJ | uncharacterized protein |
| * | NC_000913 | 2,151,689 | 0 | G→T | 37.4% | 80.3 ‑1.1 0.0 | 212 | intergenic (+43/+22) | yegJ/yegK | uncharacterized protein/ser/thr phosphatase‑related protein |
| * | NC_000913 | 2,151,691 | 0 | C→T | 17.3% | 23.1 ‑1.2 ‑0.0 | 230 | intergenic (+45/+20) | yegJ/yegK | uncharacterized protein/ser/thr phosphatase‑related protein |
| * | NC_000913 | 2,228,278 | 0 | G→C | 30.0% | 53.5 ‑0.1 0.0 | 238 | pseudogene (332/1287 nt) | mdtQ | pseudogene; putative channel/filament proteins |
| * | NC_000913 | 3,206,477 | 0 | T→A | 18.1% | 39.0 ‑0.8 0.0 | 356 | S5R (AGT→AGA) | ttdA | L‑tartrate dehydratase, alpha subunit |
| * | NC_000913 | 3,206,480 | 0 | T→A | 24.1% | 78.9 ‑0.8 0.0 | 356 | N6K (AAT→AAA) | ttdA | L‑tartrate dehydratase, alpha subunit |
| * | NC_000913 | 3,206,506 | 0 | C→A | 16.5% | 30.9 ‑0.9 ‑0.0 | 373 | T15K (ACA→AAA) | ttdA | L‑tartrate dehydratase, alpha subunit |
| * | NC_000913 | 3,745,371 | 0 | T→G | 16.9% | 10.0 ‑1.7 0.0 | 320 | W190G (TGG→GGG) | yiaN | 2,3‑diketo‑L‑gulonate TRAP transporter large permease protein |
| * | NC_000913 | 3,862,673 | 0 | G→A | 12.2% | 14.4 ‑0.5 0.0 | 282 | pseudogene (931/1617 nt) | glvC | pseudogene, arbutin specific enzyme IIC component of PTS;enzyme; Transport of small molecules: Carbohydrates, organic acids, alcohols; PTS system, arbutin‑like IIB component; PTS system, arbutin‑like IIC component |
| * | NC_000913 | 4,027,120 | 0 | C→T | 13.5% | 12.3 ‑0.1 0.0 | 308 | I198I (ATC→ATT) | fre | NAD(P)H‑flavin reductase |
| * | NC_000913 | 4,296,268 | 0 | T→C | 14.3% | 21.5 ‑1.0 ‑0.1 | 85 | intergenic (+474/+168) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| * | NC_000913 | 4,458,438 | 0 | T→G | 14.0% | 12.0 ‑0.3 0.0 | 340 | G160G (GGT→GGG) | pmbA | putative antibiotic peptide MccB17 maturation peptidase |
| * | NC_000913 | 4,571,081 | 0 | A→C | 24.0% | 10.8 ‑0.3 0.0 | 231 | V165G (GTG→GGG) | yjiR | putative DNA‑binding transcriptional regulator/putative aminotransferase |
| Marginal new junction evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 4542682 = | 500 (1.210) | 29 (0.070) | 25/308 | 9.8 | 6.0% | intergenic (+49/‑433) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913 | 4542996 = | 440 (1.130) | intergenic (+363/‑119) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913 | = 382590 | NA (NA) | 31 (0.080) | 24/326 | 10.7 | 5.9% | noncoding (1331/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | 564107 = | 491 (1.190) | coding (374/633 nt) | sfmZ | response regulator family protein | |||||
| * | ? | NC_000913 | 381260 = | NA (NA) | 27 (0.070) | 18/324 | 12.6 | 5.1% | noncoding (1/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | = 564111 | 502 (1.220) | coding (370/633 nt) | sfmZ | response regulator family protein | |||||
| * | ? | NC_000913 | 3652036 = | NA (NA) | 100 (0.240) | 17/326 | 13.0 | 16.3% | noncoding (1195/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | = 3890078 | 513 (1.240) | coding (1349/1416 nt) | tnaA | tryptophanase/L‑cysteine desulfhydrase, PLP‑dependent | |||||
| * | ? | NC_000913 | = 2290113 | NA (NA) | 17 (0.040) | 16/326 | 13.4 | 3.2% | noncoding (1/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | 3890075 = | 510 (1.230) | coding (1346/1416 nt) | tnaA | tryptophanase/L‑cysteine desulfhydrase, PLP‑dependent | |||||
| * | ? | NC_000913 | = 4542690 | 541 (1.310) | 13 (0.030) | 11/308 | 15.1 | 2.7% | intergenic (+57/‑425) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913 | = 4542986 | 440 (1.130) | intergenic (+353/‑129) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913 | 1097039 = | 226 (0.550) | 15 (0.040) | 10/324 | 16.1 | 6.8% | intergenic (+210/+526) | ycdU/serX | putative inner membrane protein/tRNA‑Ser |
| ? | NC_000913 | = 1097580 | 189 (0.460) | noncoding (73/88 nt) | serX | tRNA‑Ser | |||||
| * | ? | NC_000913 | = 3815858 | 424 (1.030) | 10 (0.030) | 9/306 | 16.1 | 2.8% | pseudogene (24/48 nt) | rph | ribonuclease PH (defective);enzyme; Degradation of RNA; RNase PH |
| ? | NC_000913 | 3815941 = | 290 (0.750) | pseudogene (609/669 nt) | rph | ribonuclease PH (defective);enzyme; Degradation of RNA; RNase PH | |||||
| * | ? | NC_000913 | 1097029 = | 230 (0.560) | 20 (0.050) | 8/324 | 17.3 | 8.9% | intergenic (+200/+536) | ycdU/serX | putative inner membrane protein/tRNA‑Ser |
| ? | NC_000913 | = 1097570 | 180 (0.440) | noncoding (83/88 nt) | serX | tRNA‑Ser | |||||
| * | ? | NC_000913 | = 2067353 | NA (NA) | 16 (0.040) | 8/326 | 17.3 | 3.0% | noncoding (1/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | 3890075 = | 510 (1.230) | coding (1346/1416 nt) | tnaA | tryptophanase/L‑cysteine desulfhydrase, PLP‑dependent | |||||
| * | ? | NC_000913 | 2139570 = | 291 (0.700) | 6 (0.020) | 6/304 | 17.9 | 2.3% | intergenic (+85/+189) | yegH/asmA | inner membrane protein/suppressor of OmpF assembly mutants; putative outer membrane protein assembly factor; inner membrane‑anchored periplasmic protein |
| ? | NC_000913 | 2139603 = | 243 (0.630) | intergenic (+118/+156) | yegH/asmA | inner membrane protein/suppressor of OmpF assembly mutants; putative outer membrane protein assembly factor; inner membrane‑anchored periplasmic protein | |||||
| * | ? | NC_000913 | 2688404 = | 340 (0.820) | 6 (0.020) | 6/308 | 18.0 | 1.8% | coding (400/1335 nt) | glrR | response regulator regulating glmY sRNA in two‑component system with sensor protein GlrK |
| ? | NC_000913 | 2688433 = | 325 (0.830) | coding (371/1335 nt) | glrR | response regulator regulating glmY sRNA in two‑component system with sensor protein GlrK | |||||
| * | ? | NC_000913 | 217127 = | 495 (1.200) | 4 (0.010) | 4/308 | 19.5 | 0.9% | coding (1649/1719 nt) | proS | prolyl‑tRNA synthetase |
| ? | NC_000913 | 217154 = | 457 (1.170) | coding (1622/1719 nt) | proS | prolyl‑tRNA synthetase | |||||
| * | ? | NC_000913 | = 526010 | 48 (0.120) | 4 (0.010) | 4/316 | 19.8 | 7.4% | coding (2750/4281 nt) | rhsD | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| ? | NC_000913 | = 1528476 | 54 (0.130) | pseudogene (575/2037 nt) | rhsE | pseudogene, Rhs family | |||||
| * | ? | NC_000913 | = 526010 | 48 (0.120) | 4 (0.010) | 4/316 | 19.8 | 8.5% | coding (2750/4281 nt) | rhsD | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| ? | NC_000913 | = 526022 | 40 (0.100) | coding (2762/4281 nt) | rhsD | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor | |||||
| * | ? | NC_000913 | = 526027 | 40 (0.100) | 4 (0.010) | 4/316 | 19.8 | 7.4% | coding (2767/4281 nt) | rhsD | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| ? | NC_000913 | = 1528459 | 61 (0.150) | pseudogene (558/2037 nt) | rhsE | pseudogene, Rhs family | |||||
| * | ? | NC_000913 | 598879 = | 374 (0.910) | 4 (0.010) | 4/310 | 19.6 | 1.1% | coding (166/3144 nt) | cusA | copper/silver efflux system, membrane component |
| ? | NC_000913 | 598946 = | 354 (0.900) | coding (233/3144 nt) | cusA | copper/silver efflux system, membrane component | |||||
| * | ? | NC_000913 | = 972756 | 386 (0.930) | 4 (0.010) | 4/314 | 19.7 | 1.0% | coding (646/780 nt) | elyC | envelope biogenesis factor; DUF218 superfamily protein |
| ? | NC_000913 | = 972773 | 406 (1.020) | coding (629/780 nt) | elyC | envelope biogenesis factor; DUF218 superfamily protein | |||||
| * | ? | NC_000913 | 1106995 = | 523 (1.270) | 4 (0.010) | 4/306 | 19.5 | 0.8% | coding (641/1422 nt) | clsC | stationary phase cardiolipin synthase 3 |
| ? | NC_000913 | 1107021 = | 507 (1.310) | coding (667/1422 nt) | clsC | stationary phase cardiolipin synthase 3 | |||||
| * | ? | NC_000913 | = 1528464 | 61 (0.150) | 4 (0.010) | 4/316 | 19.8 | 6.6% | pseudogene (563/2037 nt) | rhsE | pseudogene, Rhs family |
| ? | NC_000913 | = 1528476 | 54 (0.130) | pseudogene (575/2037 nt) | rhsE | pseudogene, Rhs family | |||||
| * | ? | NC_000913 | = 1985111 | 531 (1.290) | 4 (0.010) | 4/304 | 19.4 | 0.8% | intergenic (‑42/+28) | araG/araF | L‑arabinose ABC transporter ATPase/L‑arabinose ABC transporter periplasmic binding protein |
| ? | NC_000913 | = 1985112 | 494 (1.280) | intergenic (‑43/+27) | araG/araF | L‑arabinose ABC transporter ATPase/L‑arabinose ABC transporter periplasmic binding protein | |||||
| * | ? | NC_000913 | = 2032335 | 421 (1.020) | 4 (0.010) | 4/308 | 19.5 | 1.0% | intergenic (‑18/+49) | dcm/yedJ | DNA cytosine methyltransferase/putative HD superfamily phosphohydrolase |
| ? | NC_000913 | = 2032336 | 401 (1.030) | intergenic (‑19/+48) | dcm/yedJ | DNA cytosine methyltransferase/putative HD superfamily phosphohydrolase | |||||
| * | ? | NC_000913 | 2541926 = | 373 (0.900) | 4 (0.010) | 4/312 | 19.7 | 1.1% | coding (587/834 nt) | cysU | sulfate/thiosulfate ABC transporter permease |
| ? | NC_000913 | 2541944 = | 352 (0.890) | coding (569/834 nt) | cysU | sulfate/thiosulfate ABC transporter permease | |||||
| * | ? | NC_000913 | = 2595154 | 370 (0.900) | 5 (0.010) | 4/306 | 19.5 | 1.4% | coding (706/2016 nt) | tmcA | elongator methionine tRNA (ac4C34) acetyltransferase |
| ? | NC_000913 | = 2595179 | 347 (0.900) | coding (681/2016 nt) | tmcA | elongator methionine tRNA (ac4C34) acetyltransferase | |||||
| * | ? | NC_000913 | 2706126 = | 351 (0.850) | 4 (0.010) | 4/310 | 19.6 | 1.2% | coding (999/1800 nt) | lepA | back‑translocating elongation factor EF4, GTPase |
| ? | NC_000913 | 2706190 = | 315 (0.800) | coding (935/1800 nt) | lepA | back‑translocating elongation factor EF4, GTPase | |||||
| * | ? | NC_000913 | = 2930800 | 319 (0.770) | 4 (0.010) | 4/320 | 19.9 | 1.1% | coding (1225/1368 nt) | sdaB | L‑serine dehydratase 2 |
| ? | NC_000913 | = 2930813 | 375 (0.930) | coding (1238/1368 nt) | sdaB | L‑serine dehydratase 2 | |||||
| * | ? | NC_000913 | = 3481674 | 372 (0.900) | 4 (0.010) | 4/314 | 19.7 | 1.1% | coding (386/1914 nt) | yheS | ABC‑F family protein predicted regulatory ATPase |
| ? | NC_000913 | = 3481686 | 369 (0.930) | coding (398/1914 nt) | yheS | ABC‑F family protein predicted regulatory ATPase | |||||
| * | ? | NC_000913 | = 3493765 | NA (NA) | 4 (0.010) | 4/310 | 19.6 | NA | noncoding (8/26 nt) | REP248 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP248 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | NC_000913 | = 3493775 | NA (NA) | noncoding (18/26 nt) | REP248 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP248 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
| * | ? | NC_000913 | 3739408 = | 378 (0.920) | 4 (0.010) | 4/314 | 19.7 | 1.1% | coding (1912/2031 nt) | malS | alpha‑amylase |
| ? | NC_000913 | 3739435 = | 376 (0.950) | coding (1939/2031 nt) | malS | alpha‑amylase | |||||
| * | ? | NC_000913 | = 3986614 | 320 (0.770) | 4 (0.010) | 4/304 | 19.4 | 1.3% | intergenic (‑607/+72) | aslA/hemY | putative Ser‑type periplasmic non‑aryl sulfatase/putative protoheme IX synthesis protein |
| ? | NC_000913 | = 3986622 | 304 (0.790) | intergenic (‑615/+64) | aslA/hemY | putative Ser‑type periplasmic non‑aryl sulfatase/putative protoheme IX synthesis protein | |||||
| * | ? | NC_000913 | = 4081273 | 271 (0.660) | 4 (0.010) | 4/308 | 19.5 | 1.5% | coding (588/636 nt) | fdoI | formate dehydrogenase‑O, cytochrome b556 subunit |
| ? | NC_000913 | = 4081294 | 262 (0.670) | coding (567/636 nt) | fdoI | formate dehydrogenase‑O, cytochrome b556 subunit | |||||
| * | ? | NC_000913 | = 4139487 | 351 (0.850) | 4 (0.010) | 4/310 | 19.6 | 1.2% | coding (222/663 nt) | fsaB | fructose‑6‑phosphate aldolase 2 |
| ? | NC_000913 | = 4139509 | 317 (0.810) | coding (200/663 nt) | fsaB | fructose‑6‑phosphate aldolase 2 | |||||
| * | ? | NC_000913 | 4417665 = | 378 (0.920) | 4 (0.010) | 4/310 | 19.6 | 1.1% | coding (714/750 nt) | yjfP | acyl CoA esterase |
| ? | NC_000913 | 4417698 = | 357 (0.910) | coding (747/750 nt) | yjfP | acyl CoA esterase | |||||
| * | ? | NC_000913 | = 201031 | 367 (0.890) | 4 (0.010) | 3/310 | 20.5 | 1.2% | coding (61/1026 nt) | lpxD | UDP‑3‑O‑(3‑hydroxymyristoyl)‑glucosamine N‑acyltransferase |
| ? | NC_000913 | = 201041 | 328 (0.840) | coding (71/1026 nt) | lpxD | UDP‑3‑O‑(3‑hydroxymyristoyl)‑glucosamine N‑acyltransferase | |||||
| * | ? | NC_000913 | 3461599 = | 321 (0.780) | 4 (0.010) | 3/310 | 20.5 | 1.4% | coding (132/510 nt) | gspH | putative general secretory pathway component, cryptic |
| ? | NC_000913 | 3461642 = | 276 (0.700) | coding (175/510 nt) | gspH | putative general secretory pathway component, cryptic | |||||
| * | ? | NC_000913 | = 3843338 | 456 (1.100) | 4 (0.010) | 3/306 | 20.3 | 0.9% | coding (452/1335 nt) | adeQ | adenine permease, high affinity; adenine:H+ symporter |
| ? | NC_000913 | 4606393 = | 427 (1.100) | noncoding (9/87 nt) | leuQ | tRNA‑Leu | |||||
| * | ? | NC_000913 | 224059 = | NA (NA) | 3 (0.010) | 3/312 | 20.5 | NA | noncoding (289/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon |
| ? | NC_000913 | 224082 = | NA (NA) | noncoding (312/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon | |||||
| * | ? | NC_000913 | 517076 = | 509 (1.230) | 3 (0.010) | 3/320 | 20.8 | 0.6% | coding (494/780 nt) | fetB | iron export ABC transporter permease; peroxide resistance protein |
| ? | NC_000913 | 517096 = | 525 (1.300) | coding (514/780 nt) | fetB | iron export ABC transporter permease; peroxide resistance protein | |||||
| * | ? | NC_000913 | = 582723 | 423 (1.020) | 3 (0.010) | 3/316 | 20.7 | 0.6% | pseudogene (82/653 nt) | ybcY | pseudogene, DLP12 prophage; methyltransferase homology;Phage or Prophage Related |
| ? | NC_000913 | = 1772679 | 594 (1.480) | coding (168/1266 nt) | ydiN | putative MFS transporter, membrane protein | |||||
| * | ? | NC_000913 | 692158 = | 464 (1.120) | 3 (0.010) | 3/310 | 20.5 | 1.2% | coding (184/468 nt) | ybeY | ssRNA‑specific endoribonuclease; 16S rRNA 3' end maturation and quality control co‑endoribonuclease working with RNase R; rRNA transcription antitermination factor |
| ? | NC_000913 | 3943790 = | 58 (0.150) | noncoding (87/2904 nt) | rrlC | 23S ribosomal RNA of rrnC operon | |||||
| * | ? | NC_000913 | 750242 = | 462 (1.120) | 3 (0.010) | 3/322 | 20.9 | 0.7% | coding (1928/2448 nt) | ybgQ | putative outer membrane protein |
| ? | NC_000913 | = 763537 | 432 (1.060) | coding (524/1167 nt) | sucC | succinyl‑CoA synthetase, beta subunit | |||||
| * | ? | NC_000913 | = 1373284 | 431 (1.040) | 3 (0.010) | 3/310 | 20.5 | 0.8% | coding (63/882 nt) | ycjO | putative sugar ABC transporter permease |
| ? | NC_000913 | = 1373292 | 378 (0.960) | coding (71/882 nt) | ycjO | putative sugar ABC transporter permease | |||||
| * | ? | NC_000913 | = 1634701 | 318 (0.770) | 3 (0.010) | 3/314 | 20.6 | 0.8% | coding (185/576 nt) | tfaQ | Qin prophage; putative tail fibre assembly protein |
| ? | NC_000913 | = 2850429 | 475 (1.190) | coding (7/462 nt) | hycA | regulator of the transcriptional regulator FhlA | |||||
| * | ? | NC_000913 | = 1744340 | 337 (0.820) | 3 (0.010) | 3/310 | 20.5 | 0.9% | coding (884/1374 nt) | mdtK | multidrug efflux system transporter |
| ? | NC_000913 | = 1744392 | 304 (0.770) | coding (936/1374 nt) | mdtK | multidrug efflux system transporter | |||||
| * | ? | NC_000913 | = 1801956 | 484 (1.170) | 3 (0.010) | 3/314 | 20.6 | 0.8% | coding (615/1929 nt) | thrS | threonyl‑tRNA synthetase |
| ? | NC_000913 | 3090917 = | 295 (0.740) | coding (571/708 nt) | endA | DNA‑specific endonuclease I | |||||
| * | ? | NC_000913 | = 1979270 | NA (NA) | 8 (0.020) | 3/326 | 21.0 | 1.6% | noncoding (1/768 nt) | IS1 | repeat region |
| ? | NC_000913 | 2468910 = | 479 (1.160) | coding (697/921 nt) | gtrB | CPS‑53 (KpLE1) prophage; bactoprenol glucosyl transferase | |||||
| * | ? | NC_000913 | = 2076499 | 339 (0.820) | 3 (0.010) | 3/306 | 20.3 | 0.9% | coding (192/447 nt) | yeeS | CP4‑44 prophage; putative DNA repair protein |
| ? | NC_000913 | = 2076505 | 316 (0.820) | coding (198/447 nt) | yeeS | CP4‑44 prophage; putative DNA repair protein | |||||
| * | ? | NC_000913 | = 2226253 | 355 (0.860) | 3 (0.010) | 3/316 | 20.7 | 0.9% | coding (453/579 nt) | yohD | DedA family inner membrane protein |
| ? | NC_000913 | = 2242835 | 359 (0.900) | coding (133/1158 nt) | yeiB | DUF418 family putative inner membrane protein | |||||
| * | ? | NC_000913 | 3119783 = | 309 (0.750) | 3 (0.010) | 3/312 | 20.5 | 1.0% | coding (1497/1683 nt) | glcA | glycolate transporter |
| ? | NC_000913 | 3119805 = | 307 (0.780) | coding (1475/1683 nt) | glcA | glycolate transporter | |||||
| * | ? | NC_000913 | 3186096 = | NA (NA) | 10 (0.020) | 3/326 | 21.0 | 2.0% | noncoding (1/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | 3767092 = | 484 (1.170) | coding (756/843 nt) | yibA | putative immunity protein for polymorphic toxin RhsA; HEAT‑domain protein; lethality reduction protein | |||||
| * | ? | NC_000913 | 4017176 = | 509 (1.230) | 3 (0.010) | 3/312 | 20.5 | 0.6% | coding (746/762 nt) | udp | uridine phosphorylase |
| ? | NC_000913 | 4017222 = | 475 (1.200) | intergenic (+30/‑111) | udp/rmuC | uridine phosphorylase/DNA recombination protein | |||||
| * | ? | NC_000913 | 4434563 = | 386 (0.930) | 3 (0.010) | 3/310 | 20.5 | 0.8% | noncoding (68/111 nt) | REP334 (repetitive extragenic palindromic) element; contains 3 REP sequences | REP334 (repetitive extragenic palindromic) element; contains 3 REP sequences |
| ? | NC_000913 | 4434590 = | 401 (1.020) | noncoding (95/111 nt) | REP334 (repetitive extragenic palindromic) element; contains 3 REP sequences | REP334 (repetitive extragenic palindromic) element; contains 3 REP sequences | |||||