mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (lowest skew 10 of 149 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 2850817 = | 230 (1.260) | 9 (0.060) | 7/226 | NT | 4.5% | intergenic (+16/+103) | pcp/USA300HOU_RS14605 | Pyrrolidone‑carboxylate peptidase/hypothetical protein |
| ? | USA300TCH1516_ALE | 2850866 = | 180 (1.110) | intergenic (+65/+54) | pcp/USA300HOU_RS14605 | Pyrrolidone‑carboxylate peptidase/hypothetical protein | |||||
| * | ? | USA300TCH1516_ALE | = 2840863 | 190 (1.040) | 4 (0.020) | 4/238 | NT | 2.1% | intergenic (‑184/+121) | hisZ/USA300HOU_RS14555 | ATP phosphoribosyltransferase regulatory subunit/hypothetical protein |
| ? | USA300TCH1516_ALE | = 2840932 | 197 (1.150) | intergenic (‑253/+52) | hisZ/USA300HOU_RS14555 | ATP phosphoribosyltransferase regulatory subunit/hypothetical protein | |||||
| * | ? | USA300TCH1516_ALE | = 2830200 | 176 (0.960) | 8 (0.050) | 7/232 | NT | 4.9% | intergenic (+28/+419) | icaC/lipA_2 | putative poly‑beta‑1,6‑N‑acetyl‑D‑glucosamine export protein/Lipase 1 |
| ? | USA300TCH1516_ALE | = 2830235 | 147 (0.880) | intergenic (+63/+384) | icaC/lipA_2 | putative poly‑beta‑1,6‑N‑acetyl‑D‑glucosamine export protein/Lipase 1 | |||||
| * | ? | USA300TCH1516_ALE | 2830190 = | 176 (0.960) | 3 (0.020) | 3/232 | NT | 1.9% | intergenic (+18/+429) | icaC/lipA_2 | putative poly‑beta‑1,6‑N‑acetyl‑D‑glucosamine export protein/Lipase 1 |
| ? | USA300TCH1516_ALE | 2830247 = | 147 (0.880) | intergenic (+75/+372) | icaC/lipA_2 | putative poly‑beta‑1,6‑N‑acetyl‑D‑glucosamine export protein/Lipase 1 | |||||
| * | ? | USA300TCH1516_ALE | 2793464 = | 238 (1.300) | 5 (0.030) | 3/234 | NT | 2.4% | coding (2179/2982 nt) | yueB | ESX secretion system protein YueB |
| ? | USA300TCH1516_ALE | 2793513 = | 179 (1.060) | coding (2130/2982 nt) | yueB | ESX secretion system protein YueB | |||||
| * | ? | USA300TCH1516_ALE | 2761242 = | 185 (1.010) | 6 (0.040) | 4/238 | NT | 3.4% | intergenic (‑244/+249) | citN/sirC | Citrate transporter/Precorrin‑2 dehydrogenase |
| ? | USA300TCH1516_ALE | 2761289 = | 164 (0.960) | intergenic (‑291/+202) | citN/sirC | Citrate transporter/Precorrin‑2 dehydrogenase | |||||
| * | ? | USA300TCH1516_ALE | = 2760876 | 151 (0.830) | 3 (0.020) | 3/238 | NT | 1.9% | coding (123/1371 nt) | citN | Citrate transporter |
| ? | USA300TCH1516_ALE | = 2760923 | 166 (0.970) | coding (76/1371 nt) | citN | Citrate transporter | |||||
| * | ? | USA300TCH1516_ALE | = 2726829 | 220 (1.200) | 3 (0.020) | 3/244 | NT | 1.5% | intergenic (‑256/+86) | USA300HOU_RS14030/USA300HOU_RS14035 | hypothetical protein/hypothetical protein |
| ? | USA300TCH1516_ALE | = 2726876 | 189 (1.080) | intergenic (‑303/+39) | USA300HOU_RS14030/USA300HOU_RS14035 | hypothetical protein/hypothetical protein | |||||
| * | ? | USA300TCH1516_ALE | 2681949 = | 181 (0.990) | 5 (0.030) | 5/244 | NT | 2.8% | coding (873/1278 nt) | mvaA | 3‑hydroxy‑3‑methylglutaryl‑coenzyme A reductase |
| ? | USA300TCH1516_ALE | 2681984 = | 170 (0.970) | coding (838/1278 nt) | mvaA | 3‑hydroxy‑3‑methylglutaryl‑coenzyme A reductase | |||||
| * | ? | USA300TCH1516_ALE | 2661788 = | 201 (1.100) | 4 (0.030) | 4/222 | NT | 2.4% | intergenic (‑181/‑140) | ybiV/yydI | Sugar phosphatase YbiV/putative peptide export ATP‑binding protein YydI |
| ? | USA300TCH1516_ALE | 2661832 = | 151 (0.950) | intergenic (‑225/‑96) | ybiV/yydI | Sugar phosphatase YbiV/putative peptide export ATP‑binding protein YydI | |||||