breseq  version 0.35.4  revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Predicted mutations
evidence position mutation annotation gene description
RA 49,791 G→A intergenic (+160/‑32) kefC → / → folA glutathione‑regulated potassium‑efflux system protein KefC/type 3 dihydrofolate reductase
MC JC 2,399,465 Δ7 bp coding (650‑656/939 nt) lrhA ← transcriptional regulator LrhA
RA 4,178,033 C→T A919V (GCG→GTG)  rpoC → DNA‑directed RNA polymerase subunit beta'

Unassigned missing coverage evidence
   seq id start end size ←reads reads→ gene description
* * ÷ NZ_CP009273 29241 29308 68 2 [1] [1] 3 dapB/carA 4‑hydroxy‑tetrahydrodipicolinate reductase/glutamine‑hydrolyzing carbamoyl‑phosphate synthase small subunit
* * ÷ NZ_CP009273 50465 50470 6 2 [0] [1] 3 apaH bis(5'‑nucleosyl)‑tetraphosphatase (symmetrical) ApaH
* * ÷ NZ_CP009273 60493 60527 35 2 [1] [1] 2 rapA RNA polymerase‑associated protein RapA
* * ÷ NZ_CP009273 123261 123303 43 2 [1] [1] 2 aceF pyruvate dehydrogenase complex dihydrolipoyllysine‑residue acetyltransferase
* * ÷ NZ_CP009273 134532 134538 7 2 [0] [0] 2 cueO multicopper oxidase CueO
* * ÷ NZ_CP009273 153400 153428 29 3 [0] [1] 2 yadN/folK fimbrial protein/2‑amino‑4‑hydroxy‑6‑ hydroxymethyldihydropteridine diphosphokinase
* * ÷ NZ_CP009273 153570 153615 46 4 [1] [1] 2 yadN/folK fimbrial protein/2‑amino‑4‑hydroxy‑6‑ hydroxymethyldihydropteridine diphosphokinase
* * ÷ NZ_CP009273 181813 181823 11 2 [0] [1] 3 dapD 2,3,4,5‑tetrahydropyridine‑2,6‑dicarboxylate N‑succinyltransferase
* * ÷ NZ_CP009273 218808 218856 49 3 [1] [1] 2 metN methionine ABC transporter ATP‑binding protein MetN
* * ÷ NZ_CP009273 243110 243122 13 2 [1] [1] 2 dinJ/yafL type II toxin‑antitoxin system antitoxin DinJ/C40 family peptidase
* * ÷ NZ_CP009273 262513 262590 78 3 [1] [1] 2 BW25113_RS25435 DeoR family transcriptional regulator
* * ÷ NZ_CP009273 356938 357567 630 2 [0] [0] 2 [lacA] [lacA]
* * ÷ NZ_CP009273 396616 396632 17 2 [0] [1] 3 BW25113_RS25915 hypothetical protein
* * ÷ NZ_CP009273 397707 397727 21 2 [1] [1] 3 phoA alkaline phosphatase
* * ÷ NZ_CP009273 401729 401733 5 2 [1] [1] 2 yaiI/aroL YaiI/YqxD family protein/shikimate kinase AroL
* * ÷ NZ_CP009273 404781 404839 59 2 [1] [1] 2 rdgC recombination‑associated protein RdgC
* * ÷ NZ_CP009273 411879 411885 7 2 [0] [0] 2 sbcD exonuclease subunit SbcD
* * ÷ NZ_CP009273 428507 428536 30 2 [1] [1] 2 nrdR transcriptional regulator NrdR
* * ÷ NZ_CP009273 432061 432071 11 3 [0] [1] 3 pgpA phosphatidylglycerophosphatase A
* * ÷ NZ_CP009273 433899 433925 27 2 [1] [1] 2 dxs 1‑deoxy‑D‑xylulose‑5‑phosphate synthase
* * ÷ NZ_CP009273 447681 447775 95 2 [1] [1] 3 ampG muropeptide MFS transporter AmpG
* * ÷ NZ_CP009273 454889 454899 11 2 [1] [0] 2 lon endopeptidase La
* * ÷ NZ_CP009273 482903 482942 40 3 [1] [1] 2 mscK mechanosensitive channel MscK
* * ÷ NZ_CP009273 487280 487294 15 3 [1] [1] 2 apt adenine phosphoribosyltransferase
* * ÷ NZ_CP009273 488341 488420 80 2 [1] [0] 2 dnaX DNA polymerase III subunit gamma/tau
* * ÷ NZ_CP009273 491156 491179 24 2 [1] [1] 2 htpG molecular chaperone HtpG
* * ÷ NZ_CP009273 499409 499439 31 2 [1] [1] 3 fsr fosmidomycin MFS transporter
* * ÷ NZ_CP009273 505816 505935 120 2 [1] [1] 3 copA copper‑exporting P‑type ATPase CopA
* * ÷ NZ_CP009273 508104 508142 39 2 [0] [0] 2 ybaT APC family permease
* * ÷ NZ_CP009273 508339 508431 93 2 [1] [1] 3 ybaT APC family permease
* * ÷ NZ_CP009273 518499 518588 90 2 [1] [1] 2 ybbP/rhsD ABC transporter permease/rhs element protein RhsD
* * ÷ NZ_CP009273 519109 519196 88 2 [1] [0] 2 rhsD rhs element protein RhsD
* * ÷ NZ_CP009273 520642 520665 24 2 [1] [1] 3 rhsD rhs element protein RhsD
* * ÷ NZ_CP009273 527565 527601 37 2 [1] [1] 2 allS HTH‑type transcriptional activator AllS
* * ÷ NZ_CP009273 528132 528171 40 2 [0] [1] 3 allA ureidoglycolate lyase
* * ÷ NZ_CP009273 540335 540377 43 2 [1] [1] 3 allC allantoate deiminase
* * ÷ NZ_CP009273 543378 543437 60 2 [1] [1] 3 fdrA acyl‑CoA synthetase FdrA
* * ÷ NZ_CP009273 550565 550588 24 2 [1] [1] 2 cysS cysteine‑‑tRNA ligase
* * ÷ NZ_CP009273 561857 561882 26 3 [1] [1] 3 BW25113_RS02765 replication protein P
* * ÷ NZ_CP009273 565606 565765 160 2 [1] [1] 2 ybcK recombinase family protein
* * ÷ NZ_CP009273 574205 574222 18 2 [1] [1] 2 bor serum resistance lipoprotein Bor
* * ÷ NZ_CP009273 575069 575092 24 2 [1] [1] 2 ybcV/BW25113_RS02885 DUF1398 domain‑containing protein/hypothetical protein
* * ÷ NZ_CP009273 578651 578665 15 2 [1] [0] 2 BW25113_RS26085/appY tail fiber assembly protein/DNA‑binding transcriptional activator AppY
* * ÷ NZ_CP009273 579534 579551 18 3 [1] [0] 2 appY DNA‑binding transcriptional activator AppY
* * ÷ NZ_CP009273 585378 585432 55 3 [1] [1] 2 nfrA bacteriophage adsorption protein NfrA
* * ÷ NZ_CP009273 586925 586935 11 2 [0] [1] 4 nrfB cyclic di‑3',5'‑guanylate‑activated glycosyltransferase NrfB
* * ÷ NZ_CP009273 597650 597693 44 2 [1] [0] 2 pheP phenylalanine transporter
* * ÷ NZ_CP009273 600244 600273 30 2 [1] [0] 2 nfsB oxygen‑insensitive NAD(P)H nitroreductase
* * ÷ NZ_CP009273 607066 607091 26 2 [0] [1] 3 fepA siderophore enterobactin receptor FepA
* * ÷ NZ_CP009273 613800 613816 17 2 [1] [1] 2 wzz(fepE) LPS O‑antigen length regulator Wzz(fepE)
* * ÷ NZ_CP009273 615611 615622 12 2 [1] [1] 3 fepC iron‑enterobactin ABC transporter ATP‑binding protein
* * ÷ NZ_CP009273 625698 625711 14 2 [0] [1] 2 cstA pyruvate/proton symporter CstA
* * ÷ NZ_CP009273 628063 628115 53 2 [1] [1] 2 hcxA hydroxycarboxylate dehydrogenase HcxA
* * ÷ NZ_CP009273 628206 628235 30 2 [1] [1] 2 hcxA hydroxycarboxylate dehydrogenase HcxA
* * ÷ NZ_CP009273 632272 632323 52 2 [1] [0] 3 ybdO LysR family transcriptional regulator
* * ÷ NZ_CP009273 647479 647605 127 2 [0] [1] 2 citC/dpiB [citrate (pro‑3S)‑lyase] ligase/sensor histidine kinase DpiB
* * ÷ NZ_CP009273 647749 647832 84 3 [1] [0] 2 dpiB sensor histidine kinase DpiB
* * ÷ NZ_CP009273 651381 651482 102 2 [1] [1] 2 [dcuC] [dcuC]
* * ÷ NZ_CP009273 651947 652032 86 2 [1] [1] 2 [pagP] [pagP]
* * ÷ NZ_CP009273 654170 654216 47 2 [0] [1] 2 BW25113_RS03250 deaminated glutathione amidase
* * ÷ NZ_CP009273 654845 654898 54 2 [1] [1] 3 lipA lipoyl synthase
* * ÷ NZ_CP009273 656737 656769 33 2 [1] [1] 3 ybeF YbeF family transcriptional regulator
* * ÷ NZ_CP009273 656849 656917 69 2 [1] [1] 2 ybeF/lipB YbeF family transcriptional regulator/lipoyl(octanoyl) transferase LipB
* * ÷ NZ_CP009273 660535 660588 54 3 [1] [1] 3 rlpA endolytic peptidoglycan transglycosylase RlpA
* * ÷ NZ_CP009273 662279 662340 62 2 [0] [1] 2 mrdA peptidoglycan DD‑transpeptidase MrdA
* * ÷ NZ_CP009273 666319 666332 14 2 [1] [0] 2 holA DNA polymerase III subunit delta
* * ÷ NZ_CP009273 674218 674272 55 2 [0] [1] 2 djlB J domain‑containing protein
* * ÷ NZ_CP009273 674798 674859 62 7 [1] [0] 2 ybeT tetratricopeptide repeat protein
* * ÷ NZ_CP009273 678705 678792 88 2 [1] [1] 2 hscC molecular chaperone HscC
* * ÷ NZ_CP009273 686046 686096 51 2 [1] [1] 2 lnt apolipoprotein N‑acyltransferase
* * ÷ NZ_CP009273 689791 689814 24 2 [1] [1] 2 miaB tRNA (N6‑isopentenyl adenosine(37)‑C2)‑methylthiotransferase MiaB
* * ÷ NZ_CP009273 698210 698273 64 2 [1] [1] 2 [nagB] [nagB]
* * ÷ NZ_CP009273 713593 713643 51 2 [1] [1] 2 potE putrescine‑ornithine antiporter
* * ÷ NZ_CP009273 716340 716558 219 2 [1] [1] 2 [kdpE] [kdpE]
* * ÷ NZ_CP009273 718675 718707 33 2 [1] [1] 2 kdpD two‑component system sensor histidine kinase KdpD
* * ÷ NZ_CP009273 718994 719044 51 3 [1] [1] 2 kdpD two‑component system sensor histidine kinase KdpD
* * ÷ NZ_CP009273 724439 724581 143 2 [1] [1] 3 kdpF/ybfA K(+)‑transporting ATPase subunit F/YbfA family protein
* * ÷ NZ_CP009273 725165 725208 44 2 [1] [1] 4 rhsC rhs element protein RhsC
* * ÷ NZ_CP009273 731648 731732 85 2 [1] [0] 2 [BW25113_RS03640] [BW25113_RS03640]
* * ÷ NZ_CP009273 739111 739187 77 2 [1] [1] 3 pxpB 5‑oxoprolinase subunit PxpB
* * ÷ NZ_CP009273 743842 743884 43 2 [0] [1] 2 ybgO fimbrial protein
* * ÷ NZ_CP009273 748485 748490 6 2 [0] [0] 2 ybgD/gltA fimbrial protein/citrate synthase
* * ÷ NZ_CP009273 749727 749767 41 2 [1] [1] 2 gltA citrate synthase
* * ÷ NZ_CP009273 757623 757684 62 2 [1] [1] 2 odhB 2‑oxoglutarate dehydrogenase complex dihydrolipoyllysine‑residue succinyltransferase
* * ÷ NZ_CP009273 760660 760696 37 2 [1] [1] 2 mngR mannosyl‑D‑glycerate transport/metabolism system transcriptional repressor MngR
* * ÷ NZ_CP009273 771416 771421 6 2 [1] [0] 2 tolR colicin uptake protein TolR
* * ÷ NZ_CP009273 772653 772685 33 2 [0] [1] 2 tolA cell envelope integrity protein TolA
* * ÷ NZ_CP009273 774455 774515 61 3 [1] [0] 2 [tolB] [tolB]
* * ÷ NZ_CP009273 777440 777475 36 2 [1] [1] 2 BW25113_RS23060/nadA RtT sRNA/quinolinate synthase NadA
* * ÷ NZ_CP009273 780825 780843 19 2 [1] [1] 2 ybgS/aroG YbgS‑like family protein/3‑deoxy‑7‑phosphoheptulonate synthase AroG
* * ÷ NZ_CP009273 783064 783082 19 2 [1] [0] 2 gpmA/galM 2,3‑diphosphoglycerate‑dependent phosphoglycerate mutase/galactose‑1‑epimerase
* * ÷ NZ_CP009273 789029 789071 43 2 [1] [1] 3 modF molybdate ABC transporter ATP‑binding protein ModF
* * ÷ NZ_CP009273 792190 792286 97 2 [1] [1] 2 modC molybdenum ABC transporter ATP‑binding protein ModC
* * ÷ NZ_CP009273 803811 803861 51 3 [1] [1] 2 bioA adenosylmethionine‑‑8‑amino‑7‑oxononanoate transaminase
* * ÷ NZ_CP009273 805904 806036 133 2 [1] [1] 2 bioF 8‑amino‑7‑oxononanoate synthase
* * ÷ NZ_CP009273 808379 808518 140 5 [1] [1] 3 [bioD] [bioD]
* * ÷ NZ_CP009273 808572 808589 18 3 [1] [0] 2 bioD/uvrB dethiobiotin synthase/excinuclease ABC subunit UvrB
* * ÷ NZ_CP009273 813223 813247 25 2 [1] [1] 2 moaA GTP 3',8‑cyclase MoaA
* * ÷ NZ_CP009273 825173 825221 49 2 [1] [1] 4 hlyD secretion protein HlyD
* * ÷ NZ_CP009273 827814 827839 26 2 [1] [1] 2 rhlE/ybiA ATP‑dependent RNA helicase RhlE/N‑glycosidase YbiA
* * ÷ NZ_CP009273 829554 829568 15 2 [1] [1] 2 dinG ATP‑dependent DNA helicase DinG
* * ÷ NZ_CP009273 829648 829713 66 2 [1] [1] 3 dinG ATP‑dependent DNA helicase DinG
* * ÷ NZ_CP009273 831095 831113 19 2 [1] [0] 3 ybiB DNA‑binding protein YbiB
* * ÷ NZ_CP009273 833178 833196 19 2 [1] [0] 2 ybiJ DUF1471 family protein YbiJ
* * ÷ NZ_CP009273 833336 833468 133 3 [1] [1] 2 [ybiJ] [ybiJ]
* * ÷ NZ_CP009273 834933 834935 3 2 [0] [0] 2 fiu catecholate siderophore receptor Fiu
* * ÷ NZ_CP009273 838942 839004 63 2 [1] [1] 2 ybiO mechanosensitive channel protein
* * ÷ NZ_CP009273 848882 848909 28 2 [0] [1] 2 mntR manganese‑binding transcriptional regulator MntR
* * ÷ NZ_CP009273 864582 864649 68 2 [1] [1] 2 gsiA glutathione ABC transporter ATP‑binding protein GsiA
* * ÷ NZ_CP009273 872339 872418 80 2 [1] [1] 2 rimO 30S ribosomal protein S12 methylthiotransferase RimO
* * ÷ NZ_CP009273 873627 873672 46 2 [1] [1] 2 rimO/bssR 30S ribosomal protein S12 methylthiotransferase RimO/biofilm formation regulator BssR
* * ÷ NZ_CP009273 883295 883323 29 2 [1] [0] 2 rcdA DNA‑binding transcriptional regulator RcdA
* * ÷ NZ_CP009273 893694 893712 19 2 [1] [1] 2 ybjO YbjO family protein
* * ÷ NZ_CP009273 898705 898715 11 2 [1] [0] 2 artP arginine ABC transporter ATP‑binding protein ArtP
* * ÷ NZ_CP009273 898923 898935 13 2 [1] [0] 2 artP arginine ABC transporter ATP‑binding protein ArtP
* * ÷ NZ_CP009273 902203 902204 2 2 [0] [0] 2 ybjS NAD(P)‑dependent oxidoreductase
* * ÷ NZ_CP009273 902983 903059 77 2 [1] [1] 3 ybjT SDR family oxidoreductase
* * ÷ NZ_CP009273 903718 903775 58 2 [1] [1] 2 [ybjT]–[ltaE] [ybjT],[ltaE]
* * ÷ NZ_CP009273 906828 906849 22 2 [1] [1] 2 hcr NADH oxidoreductase
* * ÷ NZ_CP009273 925181 925191 11 3 [0] [1] 3 cydD cysteine/glutathione ABC transporter permease/ATP‑binding protein CydD
* * ÷ NZ_CP009273 928712 928729 18 3 [1] [0] 2 ftsK DNA translocase FtsK
* * ÷ NZ_CP009273 929529 929647 119 2 [1] [1] 2 ftsK DNA translocase FtsK
* * ÷ NZ_CP009273 936362 936407 46 2 [1] [1] 2 serS/dmsA serine‑‑tRNA ligase/dimethylsulfoxide reductase subunit A
* * ÷ NZ_CP009273 939331 939386 56 2 [0] [1] 2 dmsB dimethylsulfoxide reductase subunit B
* * ÷ NZ_CP009273 942309 942349 41 3 [1] [0] 2 ycaD MFS transporter
* * ÷ NZ_CP009273 950122 950333 212 2 [1] [1] 3 [ycaO] [ycaO]
* * ÷ NZ_CP009273 954623 954664 42 4 [1] [1] 2 aroA 3‑phosphoshikimate 1‑carboxyvinyltransferase
* * ÷ NZ_CP009273 965718 965750 33 2 [0] [1] 2 ycaQ winged helix DNA‑binding protein YcaQ
* * ÷ NZ_CP009273 972281 972304 24 2 [1] [1] 2 mukB chromosome partition protein MukB
* * ÷ NZ_CP009273 974415 974438 24 2 [1] [0] 2 mukB chromosome partition protein MukB
* * ÷ NZ_CP009273 974481 974484 4 2 [0] [0] 2 mukB chromosome partition protein MukB
* * ÷ NZ_CP009273 982526 982546 21 3 [0] [1] 3 ompF/asnS porin OmpF/asparagine‑‑tRNA ligase
* * ÷ NZ_CP009273 982929 982946 18 2 [0] [1] 2 ompF/asnS porin OmpF/asparagine‑‑tRNA ligase
* * ÷ NZ_CP009273 984118 984130 13 3 [0] [1] 2 asnS asparagine‑‑tRNA ligase
* * ÷ NZ_CP009273 992794 992865 72 2 [1] [1] 2 ssuE NADPH‑dependent FMN reductase
* * ÷ NZ_CP009273 993806 993904 99 2 [1] [1] 2 [elfA] [elfA]
* * ÷ NZ_CP009273 994861 994892 32 2 [1] [1] 2 elfC fimbrial biogenesis usher protein
* * ÷ NZ_CP009273 995161 995205 45 2 [1] [1] 2 elfC fimbrial biogenesis usher protein
* * ÷ NZ_CP009273 996112 996166 55 2 [1] [1] 2 elfC fimbrial biogenesis usher protein
* * ÷ NZ_CP009273 1000084 1000102 19 2 [0] [1] 2 ycbF fimbrial chaperone
* * ÷ NZ_CP009273 1007010 1007024 15 2 [1] [1] 3 uup ABC transporter ATP‑binding protein
* * ÷ NZ_CP009273 1013290 1013353 64 3 [1] [1] 2 ycbZ Lon protease family protein
* * ÷ NZ_CP009273 1015692 1015787 96 2 [1] [1] 3 ompA/sulA porin OmpA/cell division inhibitor SulA
* * ÷ NZ_CP009273 1015847 1015859 13 2 [0] [1] 2 ompA/sulA porin OmpA/cell division inhibitor SulA
* * ÷ NZ_CP009273 1016380 1016403 24 2 [1] [1] 2 sulA/sxy cell division inhibitor SulA/CRP‑S regulon transcriptional coactivator Sxy
* * ÷ NZ_CP009273 1021220 1021289 70 2 [1] [1] 3 helD DNA helicase IV
* * ÷ NZ_CP009273 1026130 1026148 19 2 [1] [1] 2 tusE/yccA sulfurtransferase TusE/FtsH protease modulator YccA
* * ÷ NZ_CP009273 1028332 1028352 21 2 [0] [1] 2 hyaA hydrogenase 1 small subunit
* * ÷ NZ_CP009273 1033366 1033432 67 4 [1] [0] 2 appC cytochrome bd‑II oxidase subunit 1
* * ÷ NZ_CP009273 1033523 1033579 57 3 [1] [1] 2 appC cytochrome bd‑II oxidase subunit 1
* * ÷ NZ_CP009273 1033754 1033777 24 5 [0] [1] 2 appC cytochrome bd‑II oxidase subunit 1
* * ÷ NZ_CP009273 1037925 1037925 1 3 [0] [0] 2 etk tyrosine‑protein kinase
* * ÷ NZ_CP009273 1038760 1038789 30 2 [0] [1] 2 etk tyrosine‑protein kinase
* * ÷ NZ_CP009273 1044678 1044696 19 2 [1] [0] 2 gfcB lipoprotein GfcB
* * ÷ NZ_CP009273 1046353 1046410 58 2 [1] [1] 2 BW25113_RS05135/cspH IS1‑like element IS1D family transposase/cold shock‑like protein CspH
* * ÷ NZ_CP009273 1057617 1057643 27 3 [1] [1] 2 torD molecular chaperone TorD
* * ÷ NZ_CP009273 1061090 1061131 42 2 [1] [1] 2 agp bifunctional glucose‑1‑phosphatase/inositol phosphatase
* * ÷ NZ_CP009273 1061606 1061616 11 2 [0] [0] 2 agp bifunctional glucose‑1‑phosphatase/inositol phosphatase
* * ÷ NZ_CP009273 1064170 1064180 11 2 [0] [1] 4 rutG pyrimidine utilization transport protein G
* * ÷ NZ_CP009273 1066750 1066815 66 2 [1] [1] 2 rutD pyrimidine utilization protein D
* * ÷ NZ_CP009273 1079365 1079444 80 2 [1] [1] 3 efeB iron uptake transporter deferrochelatase/peroxidase subunit
* * ÷ NZ_CP009273 1080331 1080341 11 3 [0] [1] 3 efeB/phoH iron uptake transporter deferrochelatase/peroxidase subunit/phosphate starvation‑inducible protein PhoH
* * ÷ NZ_CP009273 1083269 1083283 15 2 [1] [1] 3 pgaC poly‑beta‑1,6‑N‑acetyl‑D‑glucosamine synthase
* * ÷ NZ_CP009273 1085093 1085164 72 2 [0] [1] 2 pgaB poly‑beta‑1,6‑N‑acetyl‑D‑glucosamine N‑deacetylase PgaB
* * ÷ NZ_CP009273 1088581 1088600 20 2 [0] [0] 2 dgcT GGDEF domain‑containing protein
* * ÷ NZ_CP009273 1098736 1098747 12 2 [1] [0] 2 csgD/csgB biofilm master transcriptional regulator CsgD/curli minor subunit CsgB
* * ÷ NZ_CP009273 1098890 1098990 101 2 [1] [1] 2 csgD/csgB biofilm master transcriptional regulator CsgD/curli minor subunit CsgB
* * ÷ NZ_CP009273 1101301 1101341 41 2 [1] [1] 2 ymdB O‑acetyl‑ADP‑ribose deacetylase
* * ÷ NZ_CP009273 1103912 1103932 21 2 [1] [0] 2 mdoC glucans biosynthesis protein MdoC
* * ÷ NZ_CP009273 1104539 1104560 22 3 [1] [1] 2 mdoC/mdoG glucans biosynthesis protein MdoC/glucans biosynthesis protein MdoG
* * ÷ NZ_CP009273 1112262 1112281 20 2 [0] [1] 3 [trhO] [trhO]
* * ÷ NZ_CP009273 1115480 1115563 84 2 [1] [0] 2 solA N‑methyl‑L‑tryptophan oxidase
* * ÷ NZ_CP009273 1123930 1124030 101 2 [1] [0] 2 murJ murein biosynthesis integral membrane protein MurJ
* * ÷ NZ_CP009273 1124205 1124278 74 4 [1] [1] 2 murJ murein biosynthesis integral membrane protein MurJ
* * ÷ NZ_CP009273 1128302 1128376 75 2 [0] [1] 2 flgE flagellar hook protein FlgE
* * ÷ NZ_CP009273 1129370 1129442 73 2 [1] [1] 2 flgF flagellar basal‑body rod protein FlgF
* * ÷ NZ_CP009273 1129466 1129550 85 2 [1] [1] 2 flgF flagellar basal‑body rod protein FlgF
* * ÷ NZ_CP009273 1131866 1131920 55 2 [1] [1] 2 flgI flagellar basal body P‑ring protein FlgI
* * ÷ NZ_CP009273 1137649 1137704 56 2 [0] [1] 2 rne ribonuclease E
* * ÷ NZ_CP009273 1137884 1137942 59 2 [1] [1] 2 rne ribonuclease E
* * ÷ NZ_CP009273 1152767 1152817 51 2 [1] [1] 2 ycfH metal‑dependent hydrolase
* * ÷ NZ_CP009273 1158220 1158272 53 2 [1] [1] 2 lpoB penicillin‑binding protein activator LpoB
* * ÷ NZ_CP009273 1164394 1164512 119 2 [1] [0] 2 comR/bhsA TetR family copper‑responsive transcriptional repressor ComR/multiple stress resistance protein BhsA
* * ÷ NZ_CP009273 1164624 1164667 44 3 [1] [1] 2 bhsA multiple stress resistance protein BhsA
* * ÷ NZ_CP009273 1165846 1165906 61 2 [1] [0] 2 ldtC/mfd L,D‑transpeptidase LdtC/transcription‑repair coupling factor
* * ÷ NZ_CP009273 1167877 1167888 12 2 [1] [1] 2 mfd transcription‑repair coupling factor
* * ÷ NZ_CP009273 1172296 1172333 38 2 [1] [1] 2 lolD lipoprotein‑releasing ABC transporter ATP‑binding protein LolD
* * ÷ NZ_CP009273 1185127 1185166 40 2 [1] [1] 2 phoQ two‑component system sensor histidine kinase PhoQ
* * ÷ NZ_CP009273 1186171 1186210 40 2 [1] [1] 2 purB adenylosuccinate lyase
* * ÷ NZ_CP009273 1190938 1190978 41 2 [1] [1] 2 icd NADP‑dependent isocitrate dehydrogenase
* * ÷ NZ_CP009273 1192970 1192972 3 3 [0] [1] 2 ymfD class I SAM‑dependent methyltransferase
* * ÷ NZ_CP009273 1193703 1193713 11 2 [0] [0] 2 BW25113_RS05920/lit hypothetical protein/cell death peptidase Lit
* * ÷ NZ_CP009273 1194304 1194313 10 2 [1] [1] 2 lit cell death peptidase Lit
* * ÷ NZ_CP009273 1197180 1197208 29 2 [0] [1] 2 BW25113_RS23630 hypothetical protein
* * ÷ NZ_CP009273 1201115 1201124 10 2 [0] [1] 2 BW25113_RS05970 hypothetical protein
* * ÷ NZ_CP009273 1203150 1203156 7 2 [0] [0] 3 BW25113_RS05990 hypothetical protein
* * ÷ NZ_CP009273 1206587 1206676 90 2 [1] [1] 3 [mcrA] [mcrA]
* * ÷ NZ_CP009273 1207285 1207489 205 2 [0] [1] 2 [iraM] [iraM]
* * ÷ NZ_CP009273 1207665 1207739 75 2 [1] [1] 3 [BW25113_RS25985] [BW25113_RS25985]
* * ÷ NZ_CP009273 1207869 1208045 177 4 [0] [1] 2 [BW25113_RS25535] [BW25113_RS25535]
* * ÷ NZ_CP009273 1211470 1211545 76 2 [0] [1] 2 [ycgZ]–[ymgA] [ycgZ],[ymgA]
* * ÷ NZ_CP009273 1211783 1211826 44 3 [1] [0] 3 [ymgA]–[ariR] [ymgA],[ariR]
* * ÷ NZ_CP009273 1217672 1217789 118 3 [1] [0] 3 [BW25113_RS25990]–[ymgD] [BW25113_RS25990],[ymgD]
* * ÷ NZ_CP009273 1218014 1218078 65 2 [1] [1] 2 ymgD YmgD family protein
* * ÷ NZ_CP009273 1221194 1221212 19 3 [0] [1] 2 minC septum site‑determining protein MinC
* * ÷ NZ_CP009273 1225257 1225289 33 4 [1] [1] 3 hlyE hemolysin HlyE
* * ÷ NZ_CP009273 1227066 1227131 66 2 [1] [1] 3 umuC DNA polymerase V catalytic protein
* * ÷ NZ_CP009273 1227594 1227623 30 2 [1] [0] 2 umuC DNA polymerase V catalytic protein
* * ÷ NZ_CP009273 1227871 1227915 45 2 [1] [1] 3 [umuC] [umuC]
* * ÷ NZ_CP009273 1228458 1228513 56 2 [1] [0] 3 [dsbB] [dsbB]
* * ÷ NZ_CP009273 1230180 1230255 76 2 [1] [1] 3 nhaB/fadR Na(+)/H(+) antiporter NhaB/fatty acid metabolism transcriptional regulator FadR
* * ÷ NZ_CP009273 1232143 1232164 22 2 [1] [0] 2 ycgB SpoVR family protein
* * ÷ NZ_CP009273 1241813 1241828 16 3 [0] [1] 3 treA alpha,alpha‑trehalase
* * ÷ NZ_CP009273 1244786 1244826 41 2 [1] [1] 3 dhaL dihydroxyacetone kinase subunit DhaL
* * ÷ NZ_CP009273 1245324 1245357 34 2 [1] [1] 3 dhaK dihydroxyacetone kinase subunit DhaK
* * ÷ NZ_CP009273 1246097 1246124 28 2 [1] [1] 2 dhaK dihydroxyacetone kinase subunit DhaK
* * ÷ NZ_CP009273 1251764 1251812 49 2 [1] [1] 2 ycgV/ychF autotransporter outer membrane beta‑barrel domain‑containing protein/redox‑regulated ATPase YchF
* * ÷ NZ_CP009273 1253901 1253928 28 2 [0] [1] 2 pth aminoacyl‑tRNA hydrolase
* * ÷ NZ_CP009273 1254401 1254421 21 2 [1] [1] 2 ychH stress‑induced protein YchH
* * ÷ NZ_CP009273 1254497 1254536 40 2 [1] [1] 2 [ychH] [ychH]
* * ÷ NZ_CP009273 1255712 1255746 35 2 [1] [0] 2 dauA C4‑dicarboxylic acid transporter DauA
* * ÷ NZ_CP009273 1259751 1259799 49 2 [1] [1] 2 hemA glutamyl‑tRNA reductase
* * ÷ NZ_CP009273 1264327 1264350 24 2 [0] [1] 3 kdsA 3‑deoxy‑8‑phosphooctulonate synthase
* * ÷ NZ_CP009273 1266127 1266142 16 3 [1] [0] 2 BW25113_RS06340/chaA type I toxin‑antitoxin system toxin Ldr family protein/sodium‑potassium/proton antiporter ChaA
* * ÷ NZ_CP009273 1267264 1267355 92 2 [1] [1] 2 [chaA] [chaA]
* * ÷ NZ_CP009273 1267400 1267472 73 2 [1] [0] 2 chaA/chaB sodium‑potassium/proton antiporter ChaA/putative cation transport regulator ChaB
* * ÷ NZ_CP009273 1267522 1267537 16 2 [0] [0] 2 chaA/chaB sodium‑potassium/proton antiporter ChaA/putative cation transport regulator ChaB
* * ÷ NZ_CP009273 1270215 1270288 74 3 [1] [1] 2 ychO inverse autotransporter invasin YchO
* * ÷ NZ_CP009273 1273606 1273633 28 2 [0] [0] 2 narK nitrate transporter NarK
* * ÷ NZ_CP009273 1273689 1273755 67 4 [0] [1] 2 narK nitrate transporter NarK
* * ÷ NZ_CP009273 1277968 1277983 16 2 [1] [1] 2 narG nitrate reductase subunit alpha
* * ÷ NZ_CP009273 1279875 1279904 30 2 [0] [1] 3 narH nitrate reductase subunit beta
* * ÷ NZ_CP009273 1285529 1285626 98 3 [1] [1] 2 [rssA] [rssA]
* * ÷ NZ_CP009273 1286544 1286590 47 2 [1] [1] 2 rssB two‑component system response regulator RssB
* * ÷ NZ_CP009273 1287828 1287948 121 2 [1] [1] 2 galU/hns UTP‑‑glucose‑1‑phosphate uridylyltransferase GalU/DNA‑binding transcriptional regulator H‑NS
* * ÷ NZ_CP009273 1288455 1288553 99 3 [1] [1] 2 hns/tdk DNA‑binding transcriptional regulator H‑NS/thymidine kinase
* * ÷ NZ_CP009273 1293730 1293792 63 2 [1] [1] 2 adhE/ychE bifunctional acetaldehyde‑CoA/alcohol dehydrogenase/protein YchT
* * ÷ NZ_CP009273 1294017 1294020 4 2 [0] [0] 2 ychE protein YchT
* * ÷ NZ_CP009273 1294644 1294752 109 2 [1] [1] 3 [ychE] [ychE]
* * ÷ NZ_CP009273 1294794 1294848 55 3 [1] [1] 2 ychE/BW25113_RS25865 NAAT family transporter YchE/hypothetical protein
* * ÷ NZ_CP009273 1294939 1294993 55 2 [1] [1] 2 BW25113_RS25865 hypothetical protein
* * ÷ NZ_CP009273 1297597 1297672 76 2 [1] [0] 2 oppB oligopeptide ABC transporter permease OppB
* * ÷ NZ_CP009273 1300174 1300218 45 2 [1] [1] 3 oppF murein tripeptide/oligopeptide ABC transporter ATP‑binding protein OppF
* * ÷ NZ_CP009273 1300354 1300389 36 2 [1] [1] 2 oppF murein tripeptide/oligopeptide ABC transporter ATP‑binding protein OppF
* * ÷ NZ_CP009273 1302906 1302969 64 3 [1] [1] 2 cls/yciY cardiolipin synthase/YciY family protein
* * ÷ NZ_CP009273 1303057 1303121 65 2 [1] [1] 2 yciY YciY family protein
* * ÷ NZ_CP009273 1304696 1304733 38 2 [0] [0] 2 kch/yciI voltage‑gated potassium channel protein/YciI family protein
* * ÷ NZ_CP009273 1310971 1311084 114 3 [1] [1] 2 trpA tryptophan synthase subunit alpha
* * ÷ NZ_CP009273 1314394 1314420 27 2 [1] [1] 3 trpD bifunctional anthranilate synthase glutamate amidotransferase component TrpG/anthranilate phosphoribosyltransferase TrpD
* * ÷ NZ_CP009273 1315535 1315585 51 2 [1] [1] 2 trpD bifunctional anthranilate synthase glutamate amidotransferase component TrpG/anthranilate phosphoribosyltransferase TrpD
* * ÷ NZ_CP009273 1316468 1316504 37 2 [1] [1] 2 trpE anthranilate synthase component I
* * ÷ NZ_CP009273 1318375 1318458 84 2 [1] [1] 2 yciO L‑threonylcarbamoyladenylate synthase
* * ÷ NZ_CP009273 1322251 1322302 52 2 [1] [1] 2 cobO cob(I)yrinic acid a,c‑diamide adenosyltransferase
* * ÷ NZ_CP009273 1324093 1324151 59 2 [0] [1] 2 sohB protease SohB
* * ÷ NZ_CP009273 1327160 1327174 15 2 [1] [1] 2 topA type I DNA topoisomerase
* * ÷ NZ_CP009273 1327543 1327623 81 2 [1] [1] 2 topA type I DNA topoisomerase
* * ÷ NZ_CP009273 1327961 1328012 52 2 [1] [1] 2 topA/cysB type I DNA topoisomerase/HTH‑type transcriptional regulator CysB
* * ÷ NZ_CP009273 1329127 1329164 38 2 [1] [0] 2 cysB/ymiA HTH‑type transcriptional regulator CysB/YmiA family putative membrane protein
* * ÷ NZ_CP009273 1329408 1329525 118 3 [1] [1] 2 ymiA YmiA family putative membrane protein
* * ÷ NZ_CP009273 1334194 1334227 34 2 [1] [1] 2 pgpB phosphatidylglycerophosphatase B
* * ÷ NZ_CP009273 1336569 1336605 37 2 [1] [1] 5 pyrF orotidine‑5'‑phosphate decarboxylase
* * ÷ NZ_CP009273 1337312 1337327 16 4 [1] [1] 3 yciH/osmB stress response translation initiation inhibitor YciH/osmotically‑inducible lipoprotein OsmB
* * ÷ NZ_CP009273 1343285 1343301 17 2 [1] [1] 4 yciW CMD domain‑containing protein
* * ÷ NZ_CP009273 1343887 1343897 11 2 [0] [1] 5 yciW CMD domain‑containing protein
* * ÷ NZ_CP009273 1345183 1345254 72 3 [1] [1] 2 fabI enoyl‑ACP reductase FabI
* * ÷ NZ_CP009273 1346030 1346116 87 2 [1] [1] 2 [sapF] [sapF]
* * ÷ NZ_CP009273 1346765 1346792 28 2 [1] [0] 2 sapF peptide ABC transporter ATP‑binding protein SapF
* * ÷ NZ_CP009273 1347016 1347118 103 2 [1] [1] 3 sapD peptide ABC transporter ATP‑binding protein SapD
* * ÷ NZ_CP009273 1347715 1347764 50 2 [1] [1] 2 sapD peptide ABC transporter ATP‑binding protein SapD
* * ÷ NZ_CP009273 1354023 1354034 12 2 [1] [0] 2 puuA glutamate‑putrescine ligase
* * ÷ NZ_CP009273 1354166 1354219 54 3 [1] [1] 2 puuA glutamate‑putrescine ligase
* * ÷ NZ_CP009273 1354316 1354419 104 2 [1] [1] 2 puuA glutamate‑putrescine ligase
* * ÷ NZ_CP009273 1360665 1360702 38 2 [1] [1] 2 puuE 4‑aminobutyrate transaminase
* * ÷ NZ_CP009273 1360942 1360953 12 3 [1] [0] 2 puuE 4‑aminobutyrate transaminase
* * ÷ NZ_CP009273 1361223 1361256 34 2 [0] [1] 2 pspF phage shock protein operon transcriptional activator
* * ÷ NZ_CP009273 1362365 1362530 166 2 [1] [1] 2 pspA phage shock protein PspA
* * ÷ NZ_CP009273 1363290 1363328 39 2 [1] [1] 3 pspC envelope stress response membrane protein PspC
* * ÷ NZ_CP009273 1365374 1365402 29 2 [1] [1] 2 ycjM glucosylglycerate phosphorylase
* * ÷ NZ_CP009273 1377937 1377991 55 2 [0] [0] 2 ycjW LacI family DNA‑binding transcriptional regulator
* * ÷ NZ_CP009273 1378827 1378863 37 2 [1] [1] 2 ycjX YcjX family protein
* * ÷ NZ_CP009273 1379905 1379939 35 3 [1] [1] 3 ycjF YcjF family protein
* * ÷ NZ_CP009273 1387351 1387435 85 2 [1] [1] 2 pgrR/mppA DNA‑binding transcriptional regulator PgrR/murein tripeptide ABC transporter substrate‑binding protein MppA
* * ÷ NZ_CP009273 1392989 1393103 115 2 [1] [1] 6 [fnr] [fnr]
* * ÷ NZ_CP009273 1397844 1397844 1 2 [0] [0] 2 abgA p‑aminobenzoyl‑glutamate hydrolase subunit AbgA
* * ÷ NZ_CP009273 1400358 1400390 33 2 [1] [1] 2 smrA DNA endonuclease SmrA
* * ÷ NZ_CP009273 1407959 1408025 67 2 [1] [1] 2 [rcbA]–[ralR] [rcbA],[ralR]
* * ÷ NZ_CP009273 1415859 1415865 7 2 [0] [1] 3 ydaU YdaU family protein
* * ÷ NZ_CP009273 1417976 1418003 28 2 [1] [1] 2 BW25113_RS26130/trkG hypothetical protein/Trk system potassium transporter TrkG
* * ÷ NZ_CP009273 1418253 1418274 22 2 [1] [0] 3 trkG Trk system potassium transporter TrkG
* * ÷ NZ_CP009273 1420193 1420230 38 3 [1] [1] 3 BW25113_RS07160 hypothetical protein
* * ÷ NZ_CP009273 1428761 1428767 7 2 [1] [0] 3 BW25113_RS25575/uspF hypothetical protein/universal stress protein UspF
* * ÷ NZ_CP009273 1432793 1432803 11 6 [1] [1] 2 nifJ pyruvate:ferredoxin (flavodoxin) oxidoreductase
* * ÷ NZ_CP009273 1448096 1448149 54 2 [1] [1] 2 paaZ/paaA phenylacetic acid degradation bifunctional protein PaaZ/1,2‑phenylacetyl‑CoA epoxidase subunit A
* * ÷ NZ_CP009273 1448702 1448747 46 2 [1] [1] 2 paaA 1,2‑phenylacetyl‑CoA epoxidase subunit A
* * ÷ NZ_CP009273 1453528 1453653 126 2 [1] [1] 2 paaC 3‑hydroxyacyl‑CoA dehydrogenase PaaC
* * ÷ NZ_CP009273 1458558 1458575 18 2 [0] [1] 2 paaX phenylacetic acid degradation operon negative regulatory protein PaaX
* * ÷ NZ_CP009273 1459377 1459482 106 2 [1] [1] 2 [BW25113_RS25580] [BW25113_RS25580]
* * ÷ NZ_CP009273 1467961 1467995 35 3 [1] [0] 2 BW25113_RS07370 autotransporter domain‑containing protein
* * ÷ NZ_CP009273 1471063 1471076 14 2 [1] [1] 2 ydbD DUF2773 domain‑containing bactofilin
* * ÷ NZ_CP009273 1475429 1475454 26 2 [0] [1] 2 ynbD phosphatase PAP2/dual specificity phosphatase family protein
* * ÷ NZ_CP009273 1482814 1482838 25 3 [1] [1] 2 aldA aldehyde dehydrogenase
* * ÷ NZ_CP009273 1487927 1488006 80 4 [1] [1] 3 trg methyl‑accepting chemotaxis protein Trg
* * ÷ NZ_CP009273 1489404 1489440 37 2 [1] [1] 2 ydcI/ydcJ LysR substrate‑binding domain‑containing protein/VOC family protein
* * ÷ NZ_CP009273 1539072 1539131 60 2 [1] [0] 2 BW25113_RS07710 leucine‑rich repeat domain‑containing protein
* * ÷ NZ_CP009273 1539177 1539326 150 2 [0] [1] 2 BW25113_RS07710 leucine‑rich repeat domain‑containing protein
* * ÷ NZ_CP009273 1540291 1540361 71 2 [1] [0] 2 yddL/yddG porin/aromatic amino acid efflux DMT transporter YddG
* * ÷ NZ_CP009273 1540451 1540467 17 2 [0] [1] 2 yddL/yddG porin/aromatic amino acid efflux DMT transporter YddG
* * ÷ NZ_CP009273 1541518 1541577 60 2 [1] [1] 3 yddG/fdnG aromatic amino acid efflux DMT transporter YddG/formate dehydrogenase‑N subunit alpha
* * ÷ NZ_CP009273 1549929 1549967 39 2 [1] [1] 2 maeA/sra malate dehydrogenase/stationary‑phase‑induced ribosome‑associated protein
* * ÷ NZ_CP009273 1576927 1577020 94 2 [1] [1] 2 ydeN/ydeO sulfatase/acid stress response transcriptional regulator YdeO
* * ÷ NZ_CP009273 1610354 1610366 13 2 [0] [1] 2 yneK putative protein YneK
* * ÷ NZ_CP009273 1621154 1621188 35 2 [1] [1] 2 dcp peptidyl‑dipeptidase Dcp
* * ÷ NZ_CP009273 1631465 1631567 103 2 [1] [0] 2 ydfO DUF1398 domain‑containing protein
* * ÷ NZ_CP009273 1647331 1647352 22 2 [1] [1] 2 rspB Zn‑dependent oxidoreductase
* * ÷ NZ_CP009273 1652275 1652301 27 3 [1] [1] 4 ynfD/ynfE DUF1161 domain‑containing protein/dimethyl sulfoxide reductase subunit A
* * ÷ NZ_CP009273 1653128 1653171 44 2 [1] [1] 2 ynfE dimethyl sulfoxide reductase subunit A
* * ÷ NZ_CP009273 1670982 1671050 69 2 [1] [1] 3 pntA Re/Si‑specific NAD(P)(+) transhydrogenase subunit alpha
* * ÷ NZ_CP009273 1672781 1672809 29 3 [1] [1] 2 ydgH DUF1471 family protein YdgH
* * ÷ NZ_CP009273 1711079 1711105 27 2 [1] [1] 2 tyrS tyrosine‑‑tRNA ligase
* * ÷ NZ_CP009273 1712016 1712056 41 2 [1] [1] 2 pdxH pyridoxamine 5'‑phosphate oxidase
* * ÷ NZ_CP009273 1721166 1721212 47 3 [1] [1] 2 nemA N‑ethylmaleimide reductase
* * ÷ NZ_CP009273 1741762 1741772 11 2 [1] [1] 2 ydhS FAD‑NAD(P)‑binding protein
* * ÷ NZ_CP009273 1748903 1748941 39 3 [1] [0] 2 ydhY/fumD ferredoxin‑like protein/fumarate hydratase FumD
* * ÷ NZ_CP009273 1749005 1749096 92 2 [0] [1] 3 ydhY/fumD ferredoxin‑like protein/fumarate hydratase FumD
* * ÷ NZ_CP009273 1753174 1753194 21 2 [1] [1] 2 sufE cysteine desulfuration protein SufE
* * ÷ NZ_CP009273 1759911 1759921 11 2 [1] [1] 6 ydiJ FAD‑binding and (Fe‑S)‑binding domain‑containing protein
* * ÷ NZ_CP009273 1789991 1790026 36 2 [1] [1] 2 pheT phenylalanine‑‑tRNA ligase subunit beta
* * ÷ NZ_CP009273 1791600 1791688 89 2 [0] [1] 2 pheT phenylalanine‑‑tRNA ligase subunit beta
* * ÷ NZ_CP009273 1797639 1797639 1 2 [0] [0] 2 espL1 type III secretion system effector EspL1
* * ÷ NZ_CP009273 1800450 1800501 52 2 [1] [1] 2 ydiY/pfkB YdiY family protein/6‑phosphofructokinase II
* * ÷ NZ_CP009273 1807394 1807462 69 2 [1] [1] 2 BW25113_RS09050/cedA hypothetical protein/cell division activator CedA
* * ÷ NZ_CP009273 1807554 1807574 21 3 [1] [1] 2 BW25113_RS09050/cedA hypothetical protein/cell division activator CedA
* * ÷ NZ_CP009273 1815337 1815357 21 3 [1] [1] 2 chbC PTS N,N'‑diacetylchitobiose transporter subunit IIC
* * ÷ NZ_CP009273 1822993 1823003 11 2 [0] [1] 2 astD succinylglutamate‑semialdehyde dehydrogenase
* * ÷ NZ_CP009273 1838907 1839001 95 2 [1] [1] 2 ynjI DUF1266 domain‑containing protein
* * ÷ NZ_CP009273 1902204 1902215 12 2 [1] [1] 2 yobF/yebO DUF2627 domain‑containing protein/YebO family protein
* * ÷ NZ_CP009273 1907415 1907430 16 4 [0] [0] 2 prc carboxy terminal‑processing peptidase
* * ÷ NZ_CP009273 1918670 1918674 5 2 [0] [0] 4 copD copper homeostasis membrane protein CopD
* * ÷ NZ_CP009273 1943541 1943586 46 2 [1] [1] 2 aspS aspartate‑‑tRNA ligase
* * ÷ NZ_CP009273 1988978 1989000 23 4 [1] [0] 2 uvrY/BW25113_RS25650 UvrY/SirA/GacA family response regulator transcription factor/hypothetical protein
* * ÷ NZ_CP009273 2005692 2005774 83 2 [1] [1] 3 BW25113_RS10120 DUF5503 domain‑containing protein
* * ÷ NZ_CP009273 2009300 2009333 34 2 [1] [1] 3 fliG flagellar motor switch protein FliG
* * ÷ NZ_CP009273 2027361 2027377 17 2 [1] [0] 2 drpB/ompC cell division protein DrpB/porin OmpC
* * ÷ NZ_CP009273 2051131 2051167 37 2 [1] [1] 2 yeeN/BW25113_RS10360 YebC/PmpR family DNA‑binding transcriptional regulator/tRNA‑Asn
* * ÷ NZ_CP009273 2052581 2052609 29 2 [1] [1] 2 yeeO toxic metabolite efflux MATE transporter YeeO
* * ÷ NZ_CP009273 2097659 2097663 5 2 [0] [0] 2 wbbK glycosyltransferase family 1 protein
* * ÷ NZ_CP009273 2099256 2099265 10 2 [1] [1] 2 wbbI beta‑1,6‑galactofuranosyltransferase
* * ÷ NZ_CP009273 2099463 2099543 81 4 [1] [1] 3 [wbbI]–[wzy] [wbbI],[wzy]
* * ÷ NZ_CP009273 2100403 2100479 77 3 [0] [1] 2 wzy O16 family O‑antigen polymerase
* * ÷ NZ_CP009273 2100662 2100713 52 3 [0] [1] 2 [wzy]–[glf] [wzy],[glf]
* * ÷ NZ_CP009273 2116488 2116498 11 2 [1] [1] 3 cpsG/cpsB colanic acid biosynthesis phosphomannomutase CpsG/mannose‑1‑phosphate guanyltransferase
* * ÷ NZ_CP009273 2125607 2125637 31 2 [1] [0] 2 wcaB colanic acid biosynthesis acetyltransferase WcaB
* * ÷ NZ_CP009273 2127948 2127951 4 2 [0] [1] 3 wzc tyrosine‑protein kinase Wzc
* * ÷ NZ_CP009273 2144485 2144508 24 3 [1] [1] 2 yegI/yegJ protein kinase YegI/DUF2314 domain‑containing protein
* * ÷ NZ_CP009273 2154233 2154248 16 2 [1] [1] 2 mdtC multidrug efflux RND transporter permease subunit MdtC
* * ÷ NZ_CP009273 2157255 2157293 39 2 [1] [1] 2 baeS two‑component system sensor histidine kinase BaeS
* * ÷ NZ_CP009273 2166200 2166230 31 2 [1] [1] 2 gatD galactitol‑1‑phosphate 5‑dehydrogenase
* * ÷ NZ_CP009273 2166432 2166455 24 3 [1] [1] 2 BW25113_RS10915 galactitol‑specific PTS transporter subunit IIC
* * ÷ NZ_CP009273 2176880 2176934 55 2 [1] [1] 2 yegX glycoside hydrolase family 25 protein
* * ÷ NZ_CP009273 2193045 2193116 72 2 [1] [1] 2 BW25113_RS25680 WGR and DUF4132 domain‑containing protein
* * ÷ NZ_CP009273 2203370 2203416 47 2 [1] [0] 3 yehQ C69 family dipeptidase
* * ÷ NZ_CP009273 2229127 2229154 28 2 [0] [1] 2 preA NAD‑dependent dihydropyrimidine dehydrogenase subunit PreA
* * ÷ NZ_CP009273 2240395 2240432 38 2 [1] [1] 3 cirA/lysP catecholate siderophore receptor CirA/lysine‑specific permease
* * ÷ NZ_CP009273 2265754 2265766 13 4 [1] [1] 3 [pdeN] [pdeN]
* * ÷ NZ_CP009273 2271935 2271952 18 2 [1] [1] 2 yejG/bcr YejG family protein/multidrug efflux MFS transporter Bcr
* * ÷ NZ_CP009273 2276353 2276383 31 2 [1] [0] 2 rplY/yejK 50S ribosomal protein L25/nucleoid‑associated protein YejK
* * ÷ NZ_CP009273 2290085 2290095 11 2 [1] [0] 2 ccmB heme exporter protein CcmB
* * ÷ NZ_CP009273 2290607 2290616 10 2 [1] [0] 2 ccmA cytochrome c biogenesis heme‑transporting ATPase CcmA
* * ÷ NZ_CP009273 2300310 2300411 102 2 [1] [1] 2 mqo/yojI malate dehydrogenase (quinone)/microcin J25 efflux ABC transporter YojI
* * ÷ NZ_CP009273 2316115 2316147 33 2 [1] [1] 2 atoC acetoacetate metabolism transcriptional regulator AtoC
* * ÷ NZ_CP009273 2331555 2331561 7 2 [0] [1] 2 gyrA DNA topoisomerase (ATP‑hydrolyzing) subunit A
* * ÷ NZ_CP009273 2337816 2337859 44 3 [0] [1] 2 yfaL/nrdA AIDA‑I family autotransporter adhesin YfaL/EhaC/ribonucleoside‑diphosphate reductase subunit alpha
* * ÷ NZ_CP009273 2353993 2354017 25 3 [1] [1] 2 rhmD L‑rhamnonate dehydratase
* * ÷ NZ_CP009273 2356505 2356515 11 3 [1] [0] 3 yfaY nicotinamide mononucleotide deamidase‑related protein YfaY
* * ÷ NZ_CP009273 2361735 2361750 16 2 [0] [1] 2 arnA bifunctional UDP‑4‑amino‑4‑deoxy‑L‑arabinose formyltransferase/UDP‑glucuronic acid oxidase ArnA
* * ÷ NZ_CP009273 2362460 2362467 8 2 [0] [0] 2 arnA bifunctional UDP‑4‑amino‑4‑deoxy‑L‑arabinose formyltransferase/UDP‑glucuronic acid oxidase ArnA
* * ÷ NZ_CP009273 2368300 2368323 24 2 [1] [1] 2 menE o‑succinylbenzoate‑‑CoA ligase
* * ÷ NZ_CP009273 2370754 2370784 31 2 [1] [1] 3 menH 2‑succinyl‑6‑hydroxy‑2, 4‑cyclohexadiene‑1‑carboxylate synthase
* * ÷ NZ_CP009273 2376924 2376957 34 2 [1] [1] 2 elaD deubiquitinase ElaD
* * ÷ NZ_CP009273 2400432 2400457 26 2 [1] [1] 2 lrhA/alaA transcriptional regulator LrhA/alanine transaminase AlaA
* * ÷ NZ_CP009273 2404349 2404381 33 2 [1] [1] 4 yfbS SLC13 family permease
* * ÷ NZ_CP009273 2451482 2451502 21 2 [0] [1] 2 fadJ fatty acid oxidation complex subunit alpha FadJ
* * ÷ NZ_CP009273 2451755 2451840 86 2 [1] [1] 2 fadJ fatty acid oxidation complex subunit alpha FadJ
* * ÷ NZ_CP009273 2462689 2462752 64 2 [0] [0] 2 BW25113_RS12270 hypothetical protein
* * ÷ NZ_CP009273 2462809 2462890 82 2 [0] [1] 2 BW25113_RS12270 hypothetical protein
* * ÷ NZ_CP009273 2497279 2497317 39 2 [1] [1] 2 ptsP phosphoenolpyruvate‑‑protein phosphotransferase
* * ÷ NZ_CP009273 2504105 2504137 33 2 [1] [1] 2 yfeO ion channel protein
* * ÷ NZ_CP009273 2516387 2516387 1 5 [0] [0] 2 xapB xanthosine/proton symporter XapB
* * ÷ NZ_CP009273 2532030 2532057 28 3 [1] [0] 2 [cysM] [cysM]
* * ÷ NZ_CP009273 2550337 2550342 6 2 [1] [0] 2 eutC ethanolamine ammonia‑lyase subunit beta
* * ÷ NZ_CP009273 2563321 2563326 6 3 [1] [0] 2 eutJ ethanolamine utilization protein EutJ
* * ÷ NZ_CP009273 2563799 2563881 83 2 [0] [1] 3 eutE aldehyde dehydrogenase EutE
* * ÷ NZ_CP009273 2577095 2577105 11 7 [0] [0] 6 aegA formate‑dependent uric acid utilization protein AegA
* * ÷ NZ_CP009273 2583719 2583749 31 3 [1] [1] 5 acrD multidrug efflux RND transporter permease AcrD
* * ÷ NZ_CP009273 2596721 2596741 21 2 [1] [1] 4 hyfB hydrogenase 4 subunit B
* * ÷ NZ_CP009273 2599909 2599938 30 3 [1] [1] 2 hyfE hydrogenase 4 membrane subunit
* * ÷ NZ_CP009273 2607631 2607650 20 2 [0] [0] 2 focB formate transporter FocB
* * ÷ NZ_CP009273 2620931 2620943 13 2 [1] [1] 2 pdeF cyclic‑guanylate‑specific phosphodiesterase PdeF
* * ÷ NZ_CP009273 2622968 2623040 73 2 [1] [1] 2 yfgG/yfgH YfgG family protein/glycine zipper 2TM domain‑containing protein
* * ÷ NZ_CP009273 2623289 2623389 101 2 [1] [1] 2 yfgH glycine zipper 2TM domain‑containing protein
* * ÷ NZ_CP009273 2639021 2639055 35 2 [0] [0] 2 pbpC peptidoglycan glycosyltransferase PbpC
* * ÷ NZ_CP009273 2646180 2646190 11 2 [0] [1] 2 sseA 3‑mercaptopyruvate sulfurtransferase
* * ÷ NZ_CP009273 2653584 2653594 11 2 [0] [0] 2 iscU Fe‑S cluster assembly scaffold IscU
* * ÷ NZ_CP009273 2662276 2662324 49 2 [1] [1] 2 hcaR/hcaE DNA‑binding transcriptional regulator HcaR/aromatic ring‑hydroxylating dioxygenase subunit alpha
* * ÷ NZ_CP009273 2679704 2679748 45 4 [1] [1] 2 hmpA NO‑inducible flavohemoprotein
* * ÷ NZ_CP009273 2693357 2693397 41 4 [1] [1] 3 yfhL/shoB 4Fe‑4S dicluster ferredoxin YfhL/type I toxin‑antitoxin system toxin ShoB
* * ÷ NZ_CP009273 2714071 2714119 49 2 [0] [1] 2 pat protein lysine acetyltransferase
* * ÷ NZ_CP009273 2753695 2753747 53 2 [1] [0] 2 yfjI YfjI family protein
* * ÷ NZ_CP009273 2767751 2767835 85 3 [1] [1] 2 BW25113_RS13770 hypothetical protein
* * ÷ NZ_CP009273 2768314 2768411 98 2 [1] [0] 3 [BW25113_RS13770] [BW25113_RS13770]
* * ÷ NZ_CP009273 2777882 2777934 53 3 [1] [1] 2 BW25113_RS25705 DUF5507 domain‑containing protein
* * ÷ NZ_CP009273 2778025 2778036 12 2 [1] [0] 2 BW25113_RS25705 DUF5507 domain‑containing protein
* * ÷ NZ_CP009273 2779471 2779542 72 2 [1] [1] 2 BW25113_RS13825/BW25113_RS26005 tRNA‑Ile/alpha‑amylase family glycosyl hydrolase
* * ÷ NZ_CP009273 2779641 2779743 103 2 [1] [1] 3 BW25113_RS13825/BW25113_RS26005 tRNA‑Ile/alpha‑amylase family glycosyl hydrolase
* * ÷ NZ_CP009273 2781888 2781938 51 3 [1] [0] 2 BW25113_RS26005 alpha‑amylase family glycosyl hydrolase
* * ÷ NZ_CP009273 2782032 2782065 34 2 [1] [1] 2 BW25113_RS26005/csiD alpha‑amylase family glycosyl hydrolase/glutarate dioxygenase GlaH
* * ÷ NZ_CP009273 2784746 2784757 12 2 [1] [1] 2 gabD NADP‑dependent succinate‑semialdehyde dehydrogenase
* * ÷ NZ_CP009273 2810449 2810481 33 2 [1] [1] 3 yqaB fructose‑1‑phosphate/6‑phosphogluconate phosphatase
* * ÷ NZ_CP009273 2810953 2811043 91 6 [0] [1] 2 yqaB/BW25113_RS14005 fructose‑1‑phosphate/6‑phosphogluconate phosphatase/tRNA‑Arg
* * ÷ NZ_CP009273 2868116 2868119 4 2 [0] [1] 3 cysN sulfate adenylyltransferase subunit CysN
* * ÷ NZ_CP009273 2980503 2980562 60 2 [1] [1] 2 yqeG/yqeH amino acid permease/helix‑turn‑helix transcriptional regulator
* * ÷ NZ_CP009273 2984774 2984799 26 2 [1] [1] 2 ygeG tetratricopeptide repeat protein
* * ÷ NZ_CP009273 2988506 2988615 110 3 [1] [1] 2 BW25113_RS14850/BW25113_RS26010 response regulator transcription factor/hypothetical protein
* * ÷ NZ_CP009273 2988778 2988818 41 2 [0] [1] 2 BW25113_RS26010 hypothetical protein
* * ÷ NZ_CP009273 3018584 3018609 26 2 [1] [1] 2 xanQ xanthine/proton symporter XanQ
* * ÷ NZ_CP009273 3112321 3112332 12 2 [0] [0] 2 sslE lipoprotein metalloprotease SslE
* * ÷ NZ_CP009273 3129894 3129979 86 2 [1] [1] 2 pitB/gss inorganic phosphate transporter PitB/bifunctional glutathionylspermidine amidase/synthase
* * ÷ NZ_CP009273 3150781 3150805 25 3 [1] [1] 2 dkgA 2,5‑didehydrogluconate reductase DkgA
* * ÷ NZ_CP009273 3156955 3156977 23 2 [0] [1] 2 plsC/parC 1‑acylglycerol‑3‑phosphate O‑acyltransferase/DNA topoisomerase IV subunit A
* * ÷ NZ_CP009273 3165523 3165530 8 2 [0] [1] 2 ygiZ DUF2645 family protein
* * ÷ NZ_CP009273 3177481 3177485 5 2 [1] [0] 2 ribB 3,4‑dihydroxy‑2‑butanone‑4‑phosphate synthase
* * ÷ NZ_CP009273 3178634 3178755 122 2 [1] [1] 2 ubiK/ygiL ubiquinone biosynthesis accessory factor UbiK/fimbrial‑like protein
* * ÷ NZ_CP009273 3186187 3186212 26 2 [1] [1] 3 [yqiJ] [yqiJ]
* * ÷ NZ_CP009273 3209192 3209207 16 3 [1] [0] 2 nfeF NADPH‑dependent ferric chelate reductase
* * ÷ NZ_CP009273 3247126 3247178 53 3 [0] [1] 2 yhaJ DNA‑binding transcriptional regulator YhaJ
* * ÷ NZ_CP009273 3250593 3250648 56 2 [1] [0] 2 cyuP amino acid permease
* * ÷ NZ_CP009273 3268909 3268970 62 3 [1] [1] 2 garD galactarate dehydratase
* * ÷ NZ_CP009273 3272373 3272401 29 2 [1] [1] 2 kbaZ tagatose‑bisphosphate aldolase subunit KbaZ
* * ÷ NZ_CP009273 3279189 3279215 27 2 [1] [0] 2 agaD PTS galactosamine transporter subunit IID
* * ÷ NZ_CP009273 3280462 3280529 68 2 [1] [0] 2 agaI/yraH galactosamine‑6‑phosphate isomerase/fimbrial protein
* * ÷ NZ_CP009273 3280576 3280599 24 2 [0] [0] 2 agaI/yraH galactosamine‑6‑phosphate isomerase/fimbrial protein
* * ÷ NZ_CP009273 3295305 3295314 10 2 [1] [0] 4 ubiU U32 family peptidase
* * ÷ NZ_CP009273 3347573 3347608 36 2 [1] [1] 2 yhcC/gltB TIGR01212 family radical SAM protein/glutamate synthase large subunit
* * ÷ NZ_CP009273 3354220 3354256 37 2 [1] [1] 2 gltD/gltF glutamate synthase subunit GltD/DUF1120 domain‑containing protein
* * ÷ NZ_CP009273 3354471 3354481 11 5 [1] [0] 2 gltD/gltF glutamate synthase subunit GltD/DUF1120 domain‑containing protein
* * ÷ NZ_CP009273 3463284 3463308 25 2 [1] [0] 2 chiA/tuf bifunctional chitinase/lysozyme/elongation factor Tu
* * ÷ NZ_CP009273 3463374 3463437 64 2 [0] [1] 2 chiA/tuf bifunctional chitinase/lysozyme/elongation factor Tu
* * ÷ NZ_CP009273 3520891 3520901 11 2 [1] [0] 3 igaA intracellular growth attenuator protein IgaA
* * ÷ NZ_CP009273 3575397 3575407 11 2 [0] [1] 4 hcp Hcp1 family type VI secretion system effector
* * ÷ NZ_CP009273 3617612 3617644 33 2 [1] [1] 2 BW25113_RS18035/yhhI lyase/ISAs1‑like element ISEc1 family transposase
* * ÷ NZ_CP009273 3626458 3626525 68 2 [1] [1] 2 BW25113_RS18065 YhiJ/YhiL family protein
* * ÷ NZ_CP009273 3715552 3715606 55 2 [1] [0] 2 BW25113_RS25300/glyS IS3‑like element IS150 family transposase/glycine‑‑tRNA ligase subunit beta
* * ÷ NZ_CP009273 3791085 3791100 16 3 [0] [1] 2 waaL O‑antigen ligase
* * ÷ NZ_CP009273 3792383 3792442 60 3 [1] [1] 2 waaU glycosyltransferase family 9 protein
* * ÷ NZ_CP009273 3792538 3792588 51 2 [1] [0] 2 waaU glycosyltransferase family 9 protein
* * ÷ NZ_CP009273 3971540 3971547 8 2 [1] [1] 2 rffT TDP‑N‑acetylfucosamine:lipid II N‑acetylfucosaminyltransferase
* * ÷ NZ_CP009273 3979613 3979629 17 2 [0] [0] 2 aslA/hemY arylsulfatase AslA/protoheme IX biogenesis protein HemY
* * ÷ NZ_CP009273 4089798 4089835 38 2 [1] [1] 2 rhaT L‑rhamnose/proton symporter RhaT
* * ÷ NZ_CP009273 4212412 4212431 20 4 [1] [1] 3 [espL4] [espL4]
* * ÷ NZ_CP009273 4235936 4235960 25 3 [0] [1] 2 malE maltose/maltodextrin ABC transporter substrate‑binding protein MalE
* * ÷ NZ_CP009273 4258869 4258893 25 2 [1] [1] 2 BW25113_RS26020 hypothetical protein
* * ÷ NZ_CP009273 4261894 4261930 37 2 [1] [0] 3 uvrA excinuclease ABC subunit UvrA
* * ÷ NZ_CP009273 4273761 4273791 31 2 [1] [1] 2 actP cation/acetate symporter ActP
* * ÷ NZ_CP009273 4296455 4296489 35 2 [1] [0] 2 yjcS/alsK alkyl sulfatase YjcS/allose kinase
* * ÷ NZ_CP009273 4316849 4316879 31 2 [0] [0] 2 yjdM/crfC zinc ribbon domain‑containing protein YjdM/clamp‑binding protein CrfC
* * ÷ NZ_CP009273 4367627 4367658 32 4 [1] [1] 2 [ampC] [ampC]
* * ÷ NZ_CP009273 4384640 4384662 23 2 [1] [0] 4 nnr bifunctional ADP‑dependent NAD(P)H‑hydrate dehydratase/NAD(P)H‑hydrate epimerase
* * ÷ NZ_CP009273 4466774 4466852 79 2 [1] [1] 2 BW25113_RS22080 hypothetical protein
* * ÷ NZ_CP009273 4469321 4469379 59 2 [0] [1] 2 [yjgM] [yjgM]
* * ÷ NZ_CP009273 4475240 4475250 11 2 [0] [1] 5 pepA leucyl aminopeptidase
* * ÷ NZ_CP009273 4506222 4506240 19 2 [1] [0] 2 fecA Fe(3+) dicitrate transport protein FecA
* * ÷ NZ_CP009273 4532487 4532498 12 2 [1] [1] 7 fimE/fimA type 1 fimbria switch DNA invertase FimE/type 1 fimbrial major subunit FimA
* * ÷ NZ_CP009273 4584547 4584578 32 2 [0] [0] 2 lgoT/lgoR MFS transporter/GntR family transcriptional regulator
* * ÷ NZ_CP009273 4616905 4617013 109 2 [1] [1] 2 radA DNA repair protein RadA

Unassigned new junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NZ_CP009273 360104 =NA (NA)19 (1.850) 15/166 0.0 38.8% intergenic (‑35/+251) lacZ/BW25113_RS23320 beta‑galactosidase/relaxase/mobilization nuclease domain‑containing protein
?NZ_CP009273 = 360286 30 (2.920)intergenic (‑217/+69) lacZ/BW25113_RS23320 beta‑galactosidase/relaxase/mobilization nuclease domain‑containing protein
* ? NZ_CP009273 1203246 =10 (0.970)3 (0.360) 3/134 0.7 42.6% coding (290/630 nt) BW25113_RS05990 hypothetical protein
?NZ_CP009273 1205075 = 0 (0.000)coding (40/540 nt) BW25113_RS06005 phage tail protein
* ? NZ_CP009273 = 12050740 (0.000)6 (0.710) 4/136 0.5 44.4% coding (41/540 nt) BW25113_RS06005 phage tail protein
?NZ_CP009273 2465376 = 15 (1.780)coding (283/636 nt) BW25113_RS12285 hypothetical protein
* ? NZ_CP009273 4532499 =1 (0.100)5 (0.550) 5/148 0.5 59.2% intergenic (+49/‑433) fimE/fimA type 1 fimbria switch DNA invertase FimE/type 1 fimbrial major subunit FimA
?NZ_CP009273 4532813 = 6 (0.650)intergenic (+363/‑119) fimE/fimA type 1 fimbria switch DNA invertase FimE/type 1 fimbrial major subunit FimA