mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_012967 | 2,016,091 | 0 | T | A | 46.9% | 12.2 / 26.9 | 32 | intergenic (‑123/+56) | yeeE/plaP | thiosulfate utilization transporter TsuA/YeeE/putrescine/proton symporter PlaP |
| * | NC_012967 | 2,016,088 | 0 | G | A | 38.2% | 34.9 / 14.0 | 34 | intergenic (‑120/+59) | yeeE/plaP | thiosulfate utilization transporter TsuA/YeeE/putrescine/proton symporter PlaP |
| * | NC_012967 | 375,729 | 0 | T | C | 33.1% | 206.5 / 51.6 | 135 | L219P (CTG→CCG) | aroM | AroM family protein |
| * | NC_012967 | 2,016,098 | 1 | . | C | 24.3% | 83.1 / 28.5 | 37 | intergenic (‑130/+49) | yeeE/plaP | thiosulfate utilization transporter TsuA/YeeE/putrescine/proton symporter PlaP |
| * | NC_012967 | 3,174,256 | 0 | T | G | 24.0% | 310.7 / 23.8 | 150 | T175P (ACC→CCC) | ygjV | YgjV family protein |
| * | NC_012967 | 158,008 | 0 | C | T | 22.5% | 198.0 / 26.2 | 89 | G88E (GGA→GAA) | htrE | Yad fimbria usher protein HtrE |
| * | NC_012967 | 1,341,922 | 1 | . | G | 21.1% | 101.9 / 30.1 | 38 | intergenic (‑223/+46) | osmB/yciT | osmotically‑inducible lipoprotein OsmB/DNA‑binding transcriptional regulator YciT |
| * | NC_012967 | 1,132,851 | 0 | A | G | 20.6% | 526.8 / 30.4 | 240 | N65N (AAT→AAC) | yceI | YceI family protein |
| * | NC_012967 | 3,650,767 | 0 | A | G | 20.0% | 281.2 / 20.0 | 135 | intergenic (+48/‑91) | cspA/ysaE | RNA chaperone/antiterminator CspA/protein YsaE |
| Marginal new junction evidence (lowest skew 10 of 98 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_012967 | = 3894996 | NA (NA) | 94 (0.330) | 41/142 | 7.6 | 99.0% | intergenic (+26/‑162) | ECB_RS25215/rbsD | IS3‑like element IS150 family transposase/D‑ribose pyranase |
| ? | NC_012967 | 3899045 = | 1 (0.000) | intergenic (+70/‑56) | rbsB/rbsK | ribose ABC transporter substrate‑binding protein RbsB/ribokinase | |||||
| * | ? | NC_012967 | 880528 = | 156 (0.540) | 39 (0.170) | 29/114 | 8.2 | 21.4% | intergenic (+17/+163) | rcdA/ECB_RS04335 | DNA‑binding transcriptional regulator RcdA/hypothetical protein |
| ? | NC_012967 | = 904682 | 161 (0.700) | intergenic (+77/+159) | ECB_RS04500/ybjL | ogr/Delta‑like zinc finger family protein/aspartate:alanine antiporter | |||||
| * | ? | NC_012967 | 717135 = | 27 (0.090) | 18 (0.070) | 12/124 | 14.4 | 32.3% | coding (62/312 nt) | ECB_RS23290 | DUF6258 family protein |
| ? | NC_012967 | 717390 = | 52 (0.210) | intergenic (+5/‑328) | ECB_RS23290/ECB_RS03505 | DUF6258 family protein/ISAs1 family transposase | |||||
| * | ? | NC_012967 | = 4487051 | 62 (0.220) | 12 (0.050) | 10/124 | 15.4 | 16.1% | coding (1102/1218 nt) | nanX | MFS transporter |
| ? | NC_012967 | = 4487275 | 71 (0.280) | coding (97/1119 nt) | nanY | 2,7‑anhydro‑N‑acetylneuraminate hydratase | |||||
| * | ? | NC_012967 | = 4523540 | 42 (0.150) | 9 (0.040) | 8/126 | 16.5 | 11.0% | coding (590/597 nt) | fimE | type 1 fimbria switch DNA invertase FimE |
| ? | NC_012967 | = 4523778 | 109 (0.430) | intergenic (+231/‑251) | fimE/fimA | type 1 fimbria switch DNA invertase FimE/type 1 fimbrial major subunit FimA | |||||
| * | ? | NC_012967 | 3947791 = | 251 (0.880) | 10 (0.040) | 8/132 | 16.9 | 6.6% | coding (16/1656 nt) | aslA | arylsulfatase AslA |
| ? | NC_012967 | 3948049 = | 50 (0.190) | intergenic (‑243/+443) | aslA/hemY | arylsulfatase AslA/protoheme IX biogenesis protein HemY | |||||
| * | ? | NC_012967 | = 543331 | 65 (0.230) | 7 (0.030) | 7/126 | 17.1 | 15.5% | coding (549/552 nt) | ybcL | Raf kinase inhibitor‑like protein YbcL |
| ? | NC_012967 | = 543565 | 19 (0.070) | coding (222/798 nt) | ybcM | helix‑turn‑helix transcriptional regulator | |||||
| * | ? | NC_012967 | 2829863 = | 108 (0.380) | 4 (0.020) | 4/104 | 17.4 | 5.3% | intergenic (‑130/‑340) | ECB_RS14010/fucI | sugar ABC transporter ATP‑binding protein/L‑fucose isomerase |
| ? | NC_012967 | 2830124 = | 64 (0.310) | intergenic (‑391/‑79) | ECB_RS14010/fucI | sugar ABC transporter ATP‑binding protein/L‑fucose isomerase | |||||
| * | ? | NC_012967 | 183432 = | 243 (0.850) | 27 (0.100) | 7/138 | 17.8 | 10.3% | coding (1354/1518 nt) | dgt | dGTPase |
| ? | NC_012967 | = 241673 | NA (NA) | coding (113/449 nt) | ECB_RS01120 | IS1‑like element IS1A family transposase | |||||
| * | ? | NC_012967 | = 1592280 | 90 (0.310) | 6 (0.020) | 6/134 | 18.2 | 8.0% | intergenic (‑17/‑259) | ydeI/ydeJ | YdeI family stress tolerance OB fold protein/2‑oxo‑tetronate isomerase |
| ? | NC_012967 | = 1592499 | 54 (0.200) | intergenic (‑236/‑40) | ydeI/ydeJ | YdeI family stress tolerance OB fold protein/2‑oxo‑tetronate isomerase | |||||