mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_012967 | 375,729 | 0 | T | C | 45.5% | 94.4 / 80.3 | 126 | L219P (CTG→CCG) | aroM | AroM family protein |
| * | NC_012967 | 2,016,091 | 0 | T | A | 31.9% | 66.3 / 26.7 | 47 | intergenic (‑123/+56) | yeeE/plaP | thiosulfate utilization transporter TsuA/YeeE/putrescine/proton symporter PlaP |
| * | NC_012967 | 3,174,256 | 0 | T | G | 28.3% | 249.7 / 41.4 | 159 | T175P (ACC→CCC) | ygjV | YgjV family protein |
| * | NC_012967 | 2,237,486 | 0 | G | A | 27.9% | 129.2 / 23.7 | 69 | intergenic (+11/+92) | ECB_RS11165/yejO | tRNA‑Pro/autotransporter YejO |
| * | NC_012967 | 3,823,117 | 0 | A | C | 26.2% | 150.0 / 17.6 | 85 | G309G (GGT→GGG) | ECB_RS18855 | PTS sugar transporter subunit IIB |
| * | NC_012967 | 1,459,022 | 0 | T | G | 25.0% | 187.4 / 11.6 | 104 | intergenic (+20/+22) | aldA/gap | aldehyde dehydrogenase/type I glyceraldehyde‑3‑phosphate dehydrogenase |
| * | NC_012967 | 3,296,372 | 1 | . | G | 25.0% | 42.3 / 17.8 | 20 | pseudogene (338/405 nt) | ECB_RS16265 | DUF1016 N‑terminal domain‑containing protein |
| Marginal new junction evidence (lowest skew 10 of 28 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_012967 | 880528 = | 203 (0.810) | 51 (0.250) | 38/114 | 5.7 | 25.7% | intergenic (+17/+163) | rcdA/ECB_RS04335 | DNA‑binding transcriptional regulator RcdA/hypothetical protein |
| ? | NC_012967 | = 904682 | 133 (0.660) | intergenic (+77/+159) | ECB_RS04500/ybjL | ogr/Delta‑like zinc finger family protein/aspartate:alanine antiporter | |||||
| * | ? | NC_012967 | 3482676 = | 114 (0.460) | 68 (0.300) | 38/130 | 6.8 | 46.9% | coding (992/2706 nt) | malT | HTH‑type transcriptional regulator MalT |
| ? | NC_012967 | = 3482700 | 50 (0.220) | coding (1016/2706 nt) | malT | HTH‑type transcriptional regulator MalT | |||||
| * | ? | NC_012967 | 3482701 = | 77 (0.310) | 13 (0.070) +CCCGCCGCCAGTTCCCACT |
7/104 | 14.5 | 20.3% | coding (1017/2706 nt) | malT | HTH‑type transcriptional regulator MalT |
| ? | NC_012967 | = 3482706 | 63 (0.250) | coding (1022/2706 nt) | malT | HTH‑type transcriptional regulator MalT | |||||
| * | ? | NC_012967 | 2066637 = | 181 (0.720) | 38 (0.180) +GTTGGCGCACAA |
7/118 | 15.6 | 22.0% | intergenic (‑34/+59) | wcaA/wzc | colanic acid biosynthesis glycosyltransferase WcaA/tyrosine‑protein kinase Wzc |
| ? | NC_012967 | = 4208344 | 145 (0.580) | intergenic (+51/+40) | yjbB/pepE | Na/Pi cotransporter family protein/dipeptidase PepE | |||||
| * | ? | NC_012967 | 480950 = | 106 (0.420) | 53 (0.250) +AGGGTGCGGGA |
7/120 | 15.7 | 33.9% | intergenic (+324/+93) | ybaQ/copA | HigA family addiction module antitoxin/copper‑exporting P‑type ATPase CopA |
| ? | NC_012967 | 2293996 = | 139 (0.560) | intergenic (+146/+62) | nrdA/ECB_RS25995 | ribonucleoside‑diphosphate reductase subunit alpha/protein YoaM | |||||
| * | ? | NC_012967 | 480849 = | NA (NA) | 53 (0.250) +AGGGTGCGGGA |
7/120 | 15.7 | 31.1% | intergenic (+223/+194) | ybaQ/copA | HigA family addiction module antitoxin/copper‑exporting P‑type ATPase CopA |
| ? | NC_012967 | 2293996 = | 139 (0.560) | intergenic (+146/+62) | nrdA/ECB_RS25995 | ribonucleoside‑diphosphate reductase subunit alpha/protein YoaM | |||||
| * | ? | NC_012967 | 3482704 = | 74 (0.300) | 6 (0.030) +22 bp |
4/98 | 16.0 | 11.3% | coding (1020/2706 nt) | malT | HTH‑type transcriptional regulator MalT |
| ? | NC_012967 | = 3482706 | 63 (0.250) | coding (1022/2706 nt) | malT | HTH‑type transcriptional regulator MalT | |||||
| * | ? | NC_012967 | 2527115 = | 296 (1.180) | 5 (0.020) | 5/128 | 17.4 | 1.9% | coding (28/651 nt) | hyfE | hydrogenase 4 membrane subunit |
| ? | NC_012967 | = 4020488 | 249 (1.110) | coding (123/270 nt) | yihD | YihD family protein | |||||
| * | ? | NC_012967 | 160632 = | 359 (1.430) | 4 (0.020) | 4/128 | 18.1 | 1.4% | coding (1346/1398 nt) | pcnB | polynucleotide adenylyltransferase PcnB |
| ? | NC_012967 | = 326571 | 234 (1.040) | coding (1216/1887 nt) | prpE | propionate‑‑CoA ligase | |||||
| * | ? | NC_012967 | = 602385 | 318 (1.270) | 3 (0.010) | 3/118 | 18.2 | 1.3% | coding (523/816 nt) | fepC | iron‑enterobactin ABC transporter ATP‑binding protein |
| ? | NC_012967 | 1546703 = | 204 (0.980) | coding (2439/2784 nt) | pqqL | insulinase family protein | |||||