mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | ||||||
|---|---|---|---|---|---|---|
| evidence | position | mutation | freq | annotation | gene | description |
| RA | 15,318 | G→A | 8.8% | intergenic (+20/‑127) | dnaJ → / → insL1 | chaperone Hsp40, DnaK co‑chaperone/IS186 transposase |
| RA | 15,319 | T→C | 9.6% | intergenic (+21/‑126) | dnaJ → / → insL1 | chaperone Hsp40, DnaK co‑chaperone/IS186 transposase |
| RA | 53,376 | G→A | 5.1% | P14L (CCC→CTC) | pdxA ← | 4‑hydroxy‑L‑threonine phosphate dehydrogenase, NAD‑dependent |
| RA | 83,587 | A→C | 8.8% | intergenic (‑58/+35) | leuA ← / ← leuL | 2‑isopropylmalate synthase/leu operon leader peptide |
| RA | 83,590 | G→T | 8.7% | intergenic (‑61/+32) | leuA ← / ← leuL | 2‑isopropylmalate synthase/leu operon leader peptide |
| RA | 92,967 | G→A | 5.1% | A519T (GCG→ACG) | ftsI → | transpeptidase involved in septal peptidoglycan synthesis; penicillin‑binding protein 3 |
| RA | 111,013 | G→A | 6.2% | intergenic (+29/‑31) | secA → / → mutT | preprotein translocase subunit, ATPase/dGTP‑preferring nucleoside triphosphate pyrophosphohydrolase |
| RA | 111,016 | T→C | 5.4% | intergenic (+32/‑28) | secA → / → mutT | preprotein translocase subunit, ATPase/dGTP‑preferring nucleoside triphosphate pyrophosphohydrolase |
| RA | 120,154 | Δ1 bp | 5.9% | intergenic (+19/+24) | ampE → / ← aroP | ampicillin resistance inner membrane protein; putative signaling protein in beta‑lactamase regulation/aromatic amino acid transporter |
| RA | 120,158:1 | +A | 6.0% | intergenic (+23/+20) | ampE → / ← aroP | ampicillin resistance inner membrane protein; putative signaling protein in beta‑lactamase regulation/aromatic amino acid transporter |
| RA | 151,519 | A→C | 5.8% | I27M (ATT→ATG) | yadK ← | putative fimbrial‑like adhesin protein |
| RA | 151,522 | G→T | 5.9% | A26A (GCC→GCA) | yadK ← | putative fimbrial‑like adhesin protein |
| RA | 164,620 | C→T | 6.1% | intergenic (+86/‑110) | hrpB → / → mrcB | putative ATP‑dependent helicase/fused glycosyl transferase and transpeptidase |
| RA | 164,621 | A→G | 6.4% | intergenic (+87/‑109) | hrpB → / → mrcB | putative ATP‑dependent helicase/fused glycosyl transferase and transpeptidase |
| RA | 169,748 | T→A | 7.4% | intergenic (+21/‑30) | fhuA → / → fhuC | ferrichrome outer membrane transporter/iron(3+)‑hydroxamate import ABC transporter ATPase |
| RA | 169,749 | T→A | 7.4% | intergenic (+22/‑29) | fhuA → / → fhuC | ferrichrome outer membrane transporter/iron(3+)‑hydroxamate import ABC transporter ATPase |
| RA | 248,868 | C→G | 5.2% | pseudogene (1203/1713 nt) | lfhA ← | pseudogene, flagellar system protein, promoterless fragment; flagellar biosynthesis |
| RA | 252,589 | G→C | 6.3% | A97P (GCA→CCA) | yafO → | mRNA interferase toxin of the YafO‑YafN toxin‑antitoxin system |
| RA | 252,594 | G→C | 6.3% | W98C (TGG→TGC) | yafO → | mRNA interferase toxin of the YafO‑YafN toxin‑antitoxin system |
| RA | 256,449 | T→C | 7.6% | intergenic (+14/‑78) | gpt → / → frsA | xanthine phosphoribosyltransferase; xanthine‑guanine phosphoribosyltransferase/fermentation‑respiration switch protein; PTS Enzyme IIA(Glc)‑binding protein; pNP‑butyrate esterase activity |
| RA | 256,454 | C→G | 7.2% | intergenic (+19/‑73) | gpt → / → frsA | xanthine phosphoribosyltransferase; xanthine‑guanine phosphoribosyltransferase/fermentation‑respiration switch protein; PTS Enzyme IIA(Glc)‑binding protein; pNP‑butyrate esterase activity |
| RA | 256,459 | G→A | 7.3% | intergenic (+24/‑68) | gpt → / → frsA | xanthine phosphoribosyltransferase; xanthine‑guanine phosphoribosyltransferase/fermentation‑respiration switch protein; PTS Enzyme IIA(Glc)‑binding protein; pNP‑butyrate esterase activity |
| MC JC | 257,908 | Δ776 bp | 100% | [crl] | [crl] | |
| RA | 285,882 | T→G | 5.0% | I163S (ATC→AGC) | yagG → | CP4‑6 prophage; putative sugar transporter |
| RA | 285,887 | C→A | 5.5% | L165M (CTG→ATG) | yagG → | CP4‑6 prophage; putative sugar transporter |
| RA | 292,302 | C→G | 6.0% | intergenic (+71/+20) | yagJ → / ← yagK | CP4‑6 prophage; uncharacterized protein;Phage or Prophage Related/CP4‑6 prophage; conserved protein |
| RA | 324,874 | T→G | 5.4% | N164T (AAC→ACC) ‡ | ykgH ← | putative inner membrane protein |
| RA | 324,875 | T→A | 5.7% | N164Y (AAC→TAC) ‡ | ykgH ← | putative inner membrane protein |
| RA | 324,876 | C→A | 5.4% | R163S (AGG→AGT) | ykgH ← | putative inner membrane protein |
| RA | 378,398 | A→G | 5.6% | intergenic (‑30/+64) | frmB ← / ← frmA | S‑formylglutathione hydrolase/alcohol dehydrogenase class III; glutathione‑dependent formaldehyde dehydrogenase |
| RA | 378,400 | G→A | 5.9% | intergenic (‑32/+62) | frmB ← / ← frmA | S‑formylglutathione hydrolase/alcohol dehydrogenase class III; glutathione‑dependent formaldehyde dehydrogenase |
| RA | 378,403 | T→C | 5.8% | intergenic (‑35/+59) | frmB ← / ← frmA | S‑formylglutathione hydrolase/alcohol dehydrogenase class III; glutathione‑dependent formaldehyde dehydrogenase |
| RA | 378,405 | C→T | 5.9% | intergenic (‑37/+57) | frmB ← / ← frmA | S‑formylglutathione hydrolase/alcohol dehydrogenase class III; glutathione‑dependent formaldehyde dehydrogenase |
| RA | 438,740 | T→G | 5.0% | N480H (AAC→CAC) | dxs ← | 1‑deoxyxylulose‑5‑phosphate synthase, thiamine triphosphate‑binding, FAD‑requiring |
| RA | 443,022 | G→A | 6.3% | intergenic (+25/+29) | thiI → / ← yajL | tRNA s(4)U8 sulfurtransferase/oxidative‑stress‑resistance chaperone |
| RA | 443,023 | T→C | 6.4% | intergenic (+26/+28) | thiI → / ← yajL | tRNA s(4)U8 sulfurtransferase/oxidative‑stress‑resistance chaperone |
| RA | 448,965 | G→A | 5.0% | H559H (CAC→CAT) ‡ | cyoB ← | cytochrome o ubiquinol oxidase subunit I |
| RA | 448,966 | T→C | 5.1% | H559R (CAC→CGC) ‡ | cyoB ← | cytochrome o ubiquinol oxidase subunit I |
| RA | 454,853 | T→C | 6.9% | intergenic (+64/‑280) | bolA → / → tig | stationary‑phase morphogene, transcriptional repressor for mreB; also regulator for dacA, dacC, and ampC/peptidyl‑prolyl cis/trans isomerase (trigger factor) |
| RA | 454,856 | G→A | 6.6% | intergenic (+67/‑277) | bolA → / → tig | stationary‑phase morphogene, transcriptional repressor for mreB; also regulator for dacA, dacC, and ampC/peptidyl‑prolyl cis/trans isomerase (trigger factor) |
| RA | 475,971 | C→G | 9.4% | intergenic (+20/+11) | ybaY → / ← ybaZ | outer membrane lipoprotein/excision repair protein, alkyltransferase‑like protein ATL |
| RA | 475,972 | C→G | 9.4% | intergenic (+21/+10) | ybaY → / ← ybaZ | outer membrane lipoprotein/excision repair protein, alkyltransferase‑like protein ATL |
| RA | 481,225 | T→G | 9.0% | intergenic (‑517/+29) | tomB ← / ← acrB | Hha toxicity attenuator; conjugation‑related protein/multidrug efflux system protein |
| RA | 481,228 | C→A | 8.9% | intergenic (‑520/+26) | tomB ← / ← acrB | Hha toxicity attenuator; conjugation‑related protein/multidrug efflux system protein |
| RA | 533,846 | T→C | 6.6% | intergenic (+20/‑70) | allR → / → gcl | glyoxylate‑inducible transcriptional repressor of all and gcl operons/glyoxylate carboligase |
| RA | 533,849 | G→A | 7.0% | intergenic (+23/‑67) | allR → / → gcl | glyoxylate‑inducible transcriptional repressor of all and gcl operons/glyoxylate carboligase |
| RA | 543,091 | G→C | 8.7% | intergenic (+58/+170) | glxK → / ← allE | glycerate kinase II/S‑ureidoglycine aminohydrolase |
| RA | 543,094 | G→C | 8.4% | intergenic (+61/+167) | glxK → / ← allE | glycerate kinase II/S‑ureidoglycine aminohydrolase |
| RA | 553,885 | G→A | 5.5% | T19I (ACC→ATC) | lpxH ← | UDP‑2,3‑diacylglucosamine pyrophosphohydrolase |
| RA | 553,887 | G→C | 5.4% | I18M (ATC→ATG) ‡ | lpxH ← | UDP‑2,3‑diacylglucosamine pyrophosphohydrolase |
| RA | 553,889 | T→C | 5.1% | I18V (ATC→GTC) ‡ | lpxH ← | UDP‑2,3‑diacylglucosamine pyrophosphohydrolase |
| RA | 665,094 | G→C | 5.7% | P33A (CCT→GCT) | rlpA ← | septal ring protein, suppressor of prc, minor lipoprotein |
| RA | 696,325 | G→T | 6.1% | intergenic (+49/+105) | ubiF → / ← glnX | 2‑octaprenyl‑3‑methyl‑6‑methoxy‑1,4‑benzoquinol oxygenase/tRNA‑Gln |
| RA | 696,328 | A→C | 5.6% | intergenic (+52/+102) | ubiF → / ← glnX | 2‑octaprenyl‑3‑methyl‑6‑methoxy‑1,4‑benzoquinol oxygenase/tRNA‑Gln |
| RA | 729,376 | G→T | 5.6% | intergenic (+36/‑207) | ybfA → / → rhsC | DUF2517 family protein/Rhs protein with putative toxin domain; putative neighboring cell growth inhibitor |
| RA | 729,377 | A→T | 5.5% | intergenic (+37/‑206) | ybfA → / → rhsC | DUF2517 family protein/Rhs protein with putative toxin domain; putative neighboring cell growth inhibitor |
| RA | 729,378 | A→T | 5.5% | intergenic (+38/‑205) | ybfA → / → rhsC | DUF2517 family protein/Rhs protein with putative toxin domain; putative neighboring cell growth inhibitor |
| RA | 729,379 | A→C | 5.5% | intergenic (+39/‑204) | ybfA → / → rhsC | DUF2517 family protein/Rhs protein with putative toxin domain; putative neighboring cell growth inhibitor |
| RA | 770,679 | G→T | 6.2% | intergenic (+68/‑779) | mngB → / → cydA | alpha‑mannosidase/cytochrome d terminal oxidase, subunit I |
| RA | 770,682 | A→C | 5.8% | intergenic (+71/‑776) | mngB → / → cydA | alpha‑mannosidase/cytochrome d terminal oxidase, subunit I |
| RA | 774,356 | C→G | 6.6% | P16P (CCC→CCG) | ybgE → | putative inner membrane protein in cydABX‑ybgE operon |
| RA | 774,358 | T→A | 6.1% | L17Q (CTG→CAG) | ybgE → | putative inner membrane protein in cydABX‑ybgE operon |
| RA | 781,824 | C→T | 5.1% | intergenic (+172/‑261) | lysQ → / → nadA | tRNA‑Lys/quinolinate synthase, subunit A |
| RA | 781,826 | A→T | 5.0% | intergenic (+174/‑259) | lysQ → / → nadA | tRNA‑Lys/quinolinate synthase, subunit A |
| RA | 781,828 | A→G | 5.0% | intergenic (+176/‑257) | lysQ → / → nadA | tRNA‑Lys/quinolinate synthase, subunit A |
| RA | 786,613 | C→A | 7.1% | A327A (GCC→GCA) | aroG → | 3‑deoxy‑D‑arabino‑heptulosonate‑7‑phosphate synthase, phenylalanine repressible |
| RA | 786,614 | T→G | 6.8% | C328G (TGC→GGC) | aroG → | 3‑deoxy‑D‑arabino‑heptulosonate‑7‑phosphate synthase, phenylalanine repressible |
| RA | 858,924 | T→G | 5.5% | R46R (CGA→CGC) | ybiU ← | DUF1479 family protein |
| RA | 858,927 | C→A | 5.7% | T45T (ACG→ACT) | ybiU ← | DUF1479 family protein |
| RA | 907,066 | G→T | 6.9% | T406K (ACG→AAG) | ybjT ← | putative NAD‑dependent oxidoreductase |
| RA | 907,069 | A→C | 7.2% | L405R (CTT→CGT) | ybjT ← | putative NAD‑dependent oxidoreductase |
| RA | 922,314:1 | +C | 7.0% | intergenic (+21/+52) | macB → / ← cspD | macrolide ABC transporter peremase/ATPase/inhibitor of DNA replication, cold shock protein homolog |
| RA | 940,754 | G→A | 5.0% | intergenic (+34/‑205) | serS → / → dmsA | seryl‑tRNA synthetase/dimethyl sulfoxide reductase, anaerobic, subunit A |
| RA | 958,769 | C→G | 7.5% | intergenic (+28/‑43) | serC → / → aroA | 3‑phosphoserine/phosphohydroxythreonine aminotransferase/5‑enolpyruvylshikimate‑3‑phosphate synthetase |
| RA | 958,771 | A→T | 7.5% | intergenic (+30/‑41) | serC → / → aroA | 3‑phosphoserine/phosphohydroxythreonine aminotransferase/5‑enolpyruvylshikimate‑3‑phosphate synthetase |
| RA | 958,773 | C→G | 7.5% | intergenic (+32/‑39) | serC → / → aroA | 3‑phosphoserine/phosphohydroxythreonine aminotransferase/5‑enolpyruvylshikimate‑3‑phosphate synthetase |
| RA | 968,406 | G→A | 6.4% | R14Q (CGG→CAG) | lpxK → | lipid A 4'kinase |
| RA | 968,409 | T→A | 6.5% | L15Q (CTA→CAA) | lpxK → | lipid A 4'kinase |
| RA | 968,412 | T→A | 6.5% | L16* (TTG→TAG) | lpxK → | lipid A 4'kinase |
| RA | 968,415 | T→C | 6.5% | L17P (CTG→CCG) | lpxK → | lipid A 4'kinase |
| RA | 1,015,912 | T→A | 5.9% | intergenic (+30/+40) | rmf → / ← fabA | ribosome modulation factor/beta‑hydroxydecanoyl thioester dehydrase |
| RA | 1,018,983 | A→T | 5.0% | intergenic (+46/+30) | matP → / ← ompA | Ter macrodomain organizer matS‑binding protein/outer membrane protein A (3a;II*;G;d) |
| RA | 1,018,986 | A→T | 5.0% | intergenic (+49/+27) | matP → / ← ompA | Ter macrodomain organizer matS‑binding protein/outer membrane protein A (3a;II*;G;d) |
| RA | 1,075,515 | G→T | 5.6% | A1123E (GCG→GAG) | putA ← | fused DNA‑binding transcriptional regulator/proline dehydrogenase/pyrroline‑5‑carboxylate dehydrogenase |
| RA | 1,075,518 | A→C | 5.4% | L1122R (CTC→CGC) | putA ← | fused DNA‑binding transcriptional regulator/proline dehydrogenase/pyrroline‑5‑carboxylate dehydrogenase |
| RA | 1,129,394 | G→C | 5.5% | intergenic (+20/+20) | murJ → / ← flgN | putative lipid II flippase/export chaperone for FlgK and FlgL |
| RA | 1,153,208 | T→C | 7.8% | intergenic (+28/‑92) | fabF → / → pabC | 3‑oxoacyl‑[acyl‑carrier‑protein] synthase II/4‑amino‑4‑deoxychorismate lyase component of para‑aminobenzoate synthase multienzyme complex |
| RA | 1,153,213 | T→A | 7.5% | intergenic (+33/‑87) | fabF → / → pabC | 3‑oxoacyl‑[acyl‑carrier‑protein] synthase II/4‑amino‑4‑deoxychorismate lyase component of para‑aminobenzoate synthase multienzyme complex |
| RA | 1,153,214 | T→A | 7.5% | intergenic (+34/‑86) | fabF → / → pabC | 3‑oxoacyl‑[acyl‑carrier‑protein] synthase II/4‑amino‑4‑deoxychorismate lyase component of para‑aminobenzoate synthase multienzyme complex |
| RA | 1,153,219 | G→A | 7.1% | intergenic (+39/‑81) | fabF → / → pabC | 3‑oxoacyl‑[acyl‑carrier‑protein] synthase II/4‑amino‑4‑deoxychorismate lyase component of para‑aminobenzoate synthase multienzyme complex |
| RA | 1,169,380 | T→C | 7.7% | intergenic (+50/+32) | bhsA → / ← ldtC | biofilm, cell surface and signaling protein/L,D‑transpeptidase linking Lpp to murein |
| RA | 1,169,382 | C→G | 7.9% | intergenic (+52/+30) | bhsA → / ← ldtC | biofilm, cell surface and signaling protein/L,D‑transpeptidase linking Lpp to murein |
| RA | 1,169,384 | G→A | 7.9% | intergenic (+54/+28) | bhsA → / ← ldtC | biofilm, cell surface and signaling protein/L,D‑transpeptidase linking Lpp to murein |
| RA | 1,174,077 | G→A | 9.5% | intergenic (‑113/+15) | mfd ← / ← ycfT | transcription‑repair coupling factor/inner membrane protein |
| RA | 1,174,080 | T→C | 9.6% | intergenic (‑116/+12) | mfd ← / ← ycfT | transcription‑repair coupling factor/inner membrane protein |
| RA | 1,204,408 | G→A | 6.6% | pseudogene (5/1134 nt) | aaaE → | pseudogene, phage terminase protein A family, e14 prophage;Phage or Prophage Related |
| RA | 1,204,409 | T→A | 6.5% | pseudogene (6/1134 nt) | aaaE → | pseudogene, phage terminase protein A family, e14 prophage;Phage or Prophage Related |
| RA | 1,204,410 | T→C | 7.1% | pseudogene (7/1134 nt) | aaaE → | pseudogene, phage terminase protein A family, e14 prophage;Phage or Prophage Related |
| RA | 1,211,610 | A→G | 6.3% | intergenic (+33/+70) | icdC → / ← iraM | pseudogene, isocitrate dehydrogenase C‑terminal gene fragment; idcC' is a 54 codon 3' gene fragment created during e14 prophage insertion/RpoS stabilzer during Mg starvation, anti‑RssB factor |
| RA | 1,211,612 | A→T | 6.5% | intergenic (+35/+68) | icdC → / ← iraM | pseudogene, isocitrate dehydrogenase C‑terminal gene fragment; idcC' is a 54 codon 3' gene fragment created during e14 prophage insertion/RpoS stabilzer during Mg starvation, anti‑RssB factor |
| RA | 1,211,614 | C→T | 6.4% | intergenic (+37/+66) | icdC → / ← iraM | pseudogene, isocitrate dehydrogenase C‑terminal gene fragment; idcC' is a 54 codon 3' gene fragment created during e14 prophage insertion/RpoS stabilzer during Mg starvation, anti‑RssB factor |
| RA | 1,232,481 | C→T | 6.5% | intergenic (+27/+19) | umuC → / ← dsbB | translesion error‑prone DNA polymerase V subunit; DNA polymerase activity/oxidoreductase that catalyzes reoxidation of DsbA protein disulfide isomerase I |
| RA | 1,232,484 | A→G | 6.3% | intergenic (+30/+16) | umuC → / ← dsbB | translesion error‑prone DNA polymerase V subunit; DNA polymerase activity/oxidoreductase that catalyzes reoxidation of DsbA protein disulfide isomerase I |
| RA | 1,233,154 | T→A | 5.3% | intergenic (‑124/+22) | dsbB ← / ← nhaB | oxidoreductase that catalyzes reoxidation of DsbA protein disulfide isomerase I/sodium:proton antiporter |
| RA | 1,233,157 | T→A | 5.5% | intergenic (‑127/+19) | dsbB ← / ← nhaB | oxidoreductase that catalyzes reoxidation of DsbA protein disulfide isomerase I/sodium:proton antiporter |
| RA | 1,260,901 | C→T | 5.6% | intergenic (‑98/+27) | dauA ← / ← prs | C4‑dicarboxylic acid transporter/phosphoribosylpyrophosphate synthase |
| RA | 1,260,904 | A→G | 5.1% | intergenic (‑101/+24) | dauA ← / ← prs | C4‑dicarboxylic acid transporter/phosphoribosylpyrophosphate synthase |
| RA | 1,292,472 | G→A | 5.2% | intergenic (+107/+37) | galU → / ← hns | glucose‑1‑phosphate uridylyltransferase/global DNA‑binding transcriptional dual regulator H‑NS |
| RA | 1,292,473 | C→G | 5.2% | intergenic (+108/+36) | galU → / ← hns | glucose‑1‑phosphate uridylyltransferase/global DNA‑binding transcriptional dual regulator H‑NS |
| RA | 1,292,474 | T→C | 5.1% | intergenic (+109/+35) | galU → / ← hns | glucose‑1‑phosphate uridylyltransferase/global DNA‑binding transcriptional dual regulator H‑NS |
| MC JC | 1,299,499 | Δ1,199 bp | 100% | intergenic (+254/‑485) | ychE → / → oppA | UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein |
| RA | 1,315,796 | A→G | 5.2% | intergenic (‑26/+60) | yciF ← / ← yciG | putative rubrerythrin/ferritin‑like metal‑binding protein/KGG family protein |
| RA | 1,315,800 | A→G | 5.1% | intergenic (‑30/+56) | yciF ← / ← yciG | putative rubrerythrin/ferritin‑like metal‑binding protein/KGG family protein |
| RA | 1,315,803 | C→T | 5.8% | intergenic (‑33/+53) | yciF ← / ← yciG | putative rubrerythrin/ferritin‑like metal‑binding protein/KGG family protein |
| RA | 1,315,807 | C→T | 5.3% | intergenic (‑37/+49) | yciF ← / ← yciG | putative rubrerythrin/ferritin‑like metal‑binding protein/KGG family protein |
| RA | 1,355,187 | A→G | 5.0% | V95A (GTG→GCG) | sapB ← | antimicrobial peptide transport ABC transporter permease |
| RA | 1,388,283 | C→T | 10.0% | intergenic (+22/+22) | tyrR → / ← tpx | aromatic amino acid biosynthesis and transport regulon transcriptional regulator; autorepressor; ATPase; phosphatase/lipid hydroperoxide peroxidase |
| RA | 1,388,284 | A→T | 10.0% | intergenic (+23/+21) | tyrR → / ← tpx | aromatic amino acid biosynthesis and transport regulon transcriptional regulator; autorepressor; ATPase; phosphatase/lipid hydroperoxide peroxidase |
| RA | 1,388,285 | A→G | 10.0% | intergenic (+24/+20) | tyrR → / ← tpx | aromatic amino acid biosynthesis and transport regulon transcriptional regulator; autorepressor; ATPase; phosphatase/lipid hydroperoxide peroxidase |
| RA | 1,504,884 | T→C | 6.1% | intergenic (+19/+21) | insQ → / ← ydcO | IS609 transposase B/BenE family inner membrane putative transporter |
| RA | 1,504,888 | T→G | 6.7% | intergenic (+23/+17) | insQ → / ← ydcO | IS609 transposase B/BenE family inner membrane putative transporter |
| RA | 1,504,889 | C→A | 6.0% | intergenic (+24/+16) | insQ → / ← ydcO | IS609 transposase B/BenE family inner membrane putative transporter |
| RA | 1,504,893 | G→A | 6.2% | intergenic (+28/+12) | insQ → / ← ydcO | IS609 transposase B/BenE family inner membrane putative transporter |
| RA | 1,588,476 | T→A | 6.4% | M122L (ATG→TTG) | ydeS ← | putative fimbrial‑like adhesin protein |
| RA | 1,588,479 | T→A | 5.7% | N121Y (AAT→TAT) | ydeS ← | putative fimbrial‑like adhesin protein |
| RA | 1,603,724 | A→C | 5.2% | T236P (ACC→CCC) | lsrC → | autoinducer 2 import system permease protein |
| RA | 1,603,735 | G→T | 5.2% | G239G (GGG→GGT) | lsrC → | autoinducer 2 import system permease protein |
| RA | 1,608,704 | A→G | 6.6% | S107P (TCG→CCG) | yneE ← | bestrophin family putative inner membrane protein |
| RA | 1,608,707 | C→T | 6.7% | D106N (GAT→AAT) | yneE ← | bestrophin family putative inner membrane protein |
| RA | 1,642,370 | C→G | 6.5% | intergenic (+303/+119) | cspF → / ← quuQ | Qin prophage; cold shock protein/Qin prophage; putative antitermination protein Q |
| RA | 1,642,373 | C→G | 6.2% | intergenic (+306/+116) | cspF → / ← quuQ | Qin prophage; cold shock protein/Qin prophage; putative antitermination protein Q |
| RA | 1,679,398 | T→A | 8.0% | intergenic (+27/‑159) | ydgH → / → ydgI | DUF1471 family periplasmic protein/putative arginine/ornithine antiporter transporter |
| RA | 1,679,400 | G→C | 9.3% | intergenic (+29/‑157) | ydgH → / → ydgI | DUF1471 family periplasmic protein/putative arginine/ornithine antiporter transporter |
| RA | 1,679,402 | T→A | 9.1% | intergenic (+31/‑155) | ydgH → / → ydgI | DUF1471 family periplasmic protein/putative arginine/ornithine antiporter transporter |
| RA | 1,685,527 | A→G | 100% | G354G (GGT→GGC) | fumC ← | fumarate hydratase (fumarase C),aerobic Class II |
| RA | 1,764,687 | T→C | 7.3% | intergenic (‑301/+26) | sufA ← / ← rydB | Fe‑S cluster assembly protein/novel sRNA, function unknown |
| RA | 1,764,693 | C→T | 5.8% | intergenic (‑307/+20) | sufA ← / ← rydB | Fe‑S cluster assembly protein/novel sRNA, function unknown |
| RA | 1,764,694 | G→C | 5.8% | intergenic (‑308/+19) | sufA ← / ← rydB | Fe‑S cluster assembly protein/novel sRNA, function unknown |
| RA | 1,764,695 | A→G | 5.9% | intergenic (‑309/+18) | sufA ← / ← rydB | Fe‑S cluster assembly protein/novel sRNA, function unknown |
| RA | 1,764,701 | G→A | 6.8% | intergenic (‑315/+12) | sufA ← / ← rydB | Fe‑S cluster assembly protein/novel sRNA, function unknown |
| RA | 1,770,203 | T→A | 5.0% | intergenic (+17/‑169) | ydiK → / → rprA | UPF0118 family inner membrane protein/sRNA antisense activator for RpoS translation, Hfq‑dependent |
| RA | 1,770,204 | C→G | 5.0% | intergenic (+18/‑168) | ydiK → / → rprA | UPF0118 family inner membrane protein/sRNA antisense activator for RpoS translation, Hfq‑dependent |
| RA | 1,770,205 | T→A | 5.0% | intergenic (+19/‑167) | ydiK → / → rprA | UPF0118 family inner membrane protein/sRNA antisense activator for RpoS translation, Hfq‑dependent |
| RA | 1,829,334 | G→T | 5.2% | P134Q (CCG→CAG) | astD ← | succinylglutamic semialdehyde dehydrogenase |
| RA | 1,856,333 | T→G | 5.0% | E199A (GAG→GCG) ‡ | ydjH ← | putative kinase |
| RA | 1,856,334 | C→A | 5.0% | E199* (GAG→TAG) ‡ | ydjH ← | putative kinase |
| RA | 1,865,682 | G→C | 6.9% | intergenic (‑46/+44) | yeaE ← / ← mipA | aldo‑keto reductase, methylglyoxal to acetol, NADPH‑dependent/scaffolding protein for murein synthesizing machinery |
| RA | 1,954,256 | T→A | 6.4% | I272N (ATT→AAT) | cmoB → | tRNA (cmo5U34)‑carboxymethyltransferase, carboxy‑SAM‑dependent |
| MC JC | 1,978,503 | Δ776 bp | 100% | insB1–insA | insB1, insA | |
| RA | 1,985,112 | C→G | 8.9% | intergenic (‑43/+27) | araG ← / ← araF | L‑arabinose ABC transporter ATPase/L‑arabinose ABC transporter periplasmic binding protein |
| RA | 1,987,858 | G→C | 5.7% | intergenic (‑100/+15) | yecJ ← / ← azuC | DUF2766 family protein/acid‑inducible small membrane‑associated protein |
| RA | 1,991,866 | T→A | 6.3% | noncoding (36/87 nt) | leuZ ← | tRNA‑Leu |
| RA | 2,009,731 | A→G | 7.2% | intergenic (+19/‑90) | yedF → / → yedK | putative TusA family sulfurtransferase/DUF159 family protein |
| RA | 2,009,732 | C→G | 6.9% | intergenic (+20/‑89) | yedF → / → yedK | putative TusA family sulfurtransferase/DUF159 family protein |
| RA | 2,009,733 | C→T | 6.9% | intergenic (+21/‑88) | yedF → / → yedK | putative TusA family sulfurtransferase/DUF159 family protein |
| RA | 2,028,158 | G→C | 6.0% | intergenic (‑141/+30) | yedQ ← / ← yodC | putative membrane‑anchored diguanylate cyclase/uncharacterized protein |
| RA | 2,028,159 | T→A | 6.0% | intergenic (‑142/+29) | yedQ ← / ← yodC | putative membrane‑anchored diguanylate cyclase/uncharacterized protein |
| RA | 2,028,160 | G→C | 5.9% | intergenic (‑143/+28) | yedQ ← / ← yodC | putative membrane‑anchored diguanylate cyclase/uncharacterized protein |
| RA | 2,041,166 | G→T | 5.8% | intergenic (+48/‑209) | yedZ → / → zinT | inner membrane heme subunit for periplasmic YedYZ reductase/zinc and cadmium binding protein, periplasmic |
| RA | 2,041,167 | A→C | 5.2% | intergenic (+49/‑208) | yedZ → / → zinT | inner membrane heme subunit for periplasmic YedYZ reductase/zinc and cadmium binding protein, periplasmic |
| RA | 2,041,173 | C→A | 5.4% | intergenic (+55/‑202) | yedZ → / → zinT | inner membrane heme subunit for periplasmic YedYZ reductase/zinc and cadmium binding protein, periplasmic |
| RA | 2,062,354 | T→A | 5.9% | intergenic (+19/+37) | asnV → / ← ldtA | tRNA‑Asn/L,D‑transpeptidase linking Lpp to murein |
| RA | 2,062,355 | T→G | 6.0% | intergenic (+20/+36) | asnV → / ← ldtA | tRNA‑Asn/L,D‑transpeptidase linking Lpp to murein |
| RA | 2,062,356 | C→A | 5.9% | intergenic (+21/+35) | asnV → / ← ldtA | tRNA‑Asn/L,D‑transpeptidase linking Lpp to murein |
| RA | 2,062,357 | T→A | 6.0% | intergenic (+22/+34) | asnV → / ← ldtA | tRNA‑Asn/L,D‑transpeptidase linking Lpp to murein |
| RA | 2,090,122 | A→G | 5.6% | intergenic (+76/‑70) | hisL → / → hisG | his operon leader peptide/ATP phosphoribosyltransferase |
| RA | 2,090,124 | C→G | 5.6% | intergenic (+78/‑68) | hisL → / → hisG | his operon leader peptide/ATP phosphoribosyltransferase |
| RA | 2,090,126 | C→T | 5.7% | intergenic (+80/‑66) | hisL → / → hisG | his operon leader peptide/ATP phosphoribosyltransferase |
| RA | 2,145,313 | C→A | 100% | S683Y (TCC→TAC) | yegE → | putative diguanylate cyclase |
| RA | 2,173,361 | Δ2 bp | 100% | pseudogene (1‑2/442 nt) | gatC ← | pseudogene, galactitol‑specific enzyme IIC component of PTS;transport; Transport of small molecules: Carbohydrates, organic acids, alcohols; PTS system galactitol‑specific enzyme IIC |
| RA | 2,286,311 | C→G | 7.2% | intergenic (+24/+79) | proL → / ← yejO | tRNA‑Pro/pseudogene, autotransporter outer membrane homology;putative transport; Not classified; putative ATP‑binding component of a transport system |
| RA | 2,286,313 | T→A | 7.1% | intergenic (+26/+77) | proL → / ← yejO | tRNA‑Pro/pseudogene, autotransporter outer membrane homology;putative transport; Not classified; putative ATP‑binding component of a transport system |
| RA | 2,286,315 | C→G | 6.9% | intergenic (+28/+75) | proL → / ← yejO | tRNA‑Pro/pseudogene, autotransporter outer membrane homology;putative transport; Not classified; putative ATP‑binding component of a transport system |
| RA | 2,305,085 | A→G | 16.5% | intergenic (+692/+23) | eco → / ← mqo | ecotin, a serine protease inhibitor/malate dehydrogenase, FAD/NAD(P)‑binding domain |
| RA | 2,305,086 | C→G | 16.5% | intergenic (+693/+22) | eco → / ← mqo | ecotin, a serine protease inhibitor/malate dehydrogenase, FAD/NAD(P)‑binding domain |
| RA | 2,305,087 | C→T | 16.5% | intergenic (+694/+21) | eco → / ← mqo | ecotin, a serine protease inhibitor/malate dehydrogenase, FAD/NAD(P)‑binding domain |
| RA | 2,314,800 | A→C | 6.9% | Q438P (CAG→CCG) ‡ | rcsD → | phosphotransfer intermediate protein in two‑component regulatory system with RcsBC |
| RA | 2,314,801 | G→T | 7.5% | Q438H (CAG→CAT) ‡ | rcsD → | phosphotransfer intermediate protein in two‑component regulatory system with RcsBC |
| RA | 2,318,095 | C→G | 100% | L594F (TTG→TTC) | rcsC ← | hybrid sensory kinase in two‑component regulatory system with RcsB and YojN |
| RA | 2,375,483 | A→T | 7.5% | L160L (CTT→CTA) ‡ | menC ← | O‑succinylbenzoyl‑CoA synthase |
| RA | 2,375,484 | A→T | 7.5% | L160H (CTT→CAT) ‡ | menC ← | O‑succinylbenzoyl‑CoA synthase |
| RA | 2,383,959 | A→T | 5.7% | intergenic (+35/+36) | elaD → / ← yfbK | protease, capable of cleaving an AMC‑ubiquitin model substrate/Von Willebrand factor domain putative lipoprotein |
| RA | 2,407,898 | A→C | 5.4% | Q113P (CAG→CCG) ‡ | alaA → | glutamate‑pyruvate aminotransferase; glutamic‑pyruvic transaminase (GPT); alanine transaminase |
| RA | 2,407,899 | G→T | 5.5% | Q113H (CAG→CAT) ‡ | alaA → | glutamate‑pyruvate aminotransferase; glutamic‑pyruvic transaminase (GPT); alanine transaminase |
| RA | 2,414,689 | C→G | 5.1% | intergenic (+17/‑58) | ackA → / → pta | acetate kinase A and propionate kinase 2/phosphate acetyltransferase |
| RA | 2,462,677 | A→T | 5.3% | intergenic (+31/‑335) | fadL → / → yfdF | long‑chain fatty acid outer membrane transporter/uncharacterized protein |
| RA | 2,462,678 | T→A | 5.2% | intergenic (+32/‑334) | fadL → / → yfdF | long‑chain fatty acid outer membrane transporter/uncharacterized protein |
| RA | 2,462,679 | A→T | 5.1% | intergenic (+33/‑333) | fadL → / → yfdF | long‑chain fatty acid outer membrane transporter/uncharacterized protein |
| RA | 2,474,878 | T→C | 8.3% | intergenic (+22/‑106) | yfdQ → / → yfdR | CPS‑53 (KpLE1) prophage; uncharacterized protein/CPS‑53 (KpLE1) prophage; conserved protein |
| RA | 2,474,881 | G→A | 8.6% | intergenic (+25/‑103) | yfdQ → / → yfdR | CPS‑53 (KpLE1) prophage; uncharacterized protein/CPS‑53 (KpLE1) prophage; conserved protein |
| RA | 2,521,344 | C→T | 7.3% | intergenic (+16/+249) | lysV → / ← xapR | tRNA‑Lys/transcriptional activator of xapAB |
| RA | 2,521,346 | A→T | 7.6% | intergenic (+18/+247) | lysV → / ← xapR | tRNA‑Lys/transcriptional activator of xapAB |
| RA | 2,521,348 | A→G | 7.2% | intergenic (+20/+245) | lysV → / ← xapR | tRNA‑Lys/transcriptional activator of xapAB |
| RA | 2,536,370 | C→G | 5.0% | intergenic (+27/+16) | crr → / ← pdxK | glucose‑specific enzyme IIA component of PTS/pyridoxal‑pyridoxamine kinase/hydroxymethylpyrimidine kinase |
| RA | 2,561,205 | A→T | 5.7% | intergenic (+307/‑163) | yffL → / → yffM | CPZ‑55 prophage; uncharacterized protein/CPZ‑55 prophage; uncharacterized protein |
| RA | 2,561,206 | A→T | 5.8% | intergenic (+308/‑162) | yffL → / → yffM | CPZ‑55 prophage; uncharacterized protein/CPZ‑55 prophage; uncharacterized protein |
| RA | 2,581,762 | G→A | 7.3% | A339V (GCC→GTC) | ypfG ← | DUF1176 family protein |
| RA | 2,581,765 | T→C | 6.5% | D338G (GAC→GGC) | ypfG ← | DUF1176 family protein |
| RA | 2,596,873 | Δ1 bp | 6.2% | intergenic (‑136/+32) | ypfJ ← / ← purC | putative neutral zinc metallopeptidase/phosphoribosylaminoimidazole‑succinocarboxamide synthetase |
| RA | 2,596,878:1 | +G | 6.5% | intergenic (‑141/+27) | ypfJ ← / ← purC | putative neutral zinc metallopeptidase/phosphoribosylaminoimidazole‑succinocarboxamide synthetase |
| RA | 2,622,348:1 | +A | 5.6% | coding (115/639 nt) | purN → | phosphoribosylglycinamide formyltransferase 1 |
| RA | 2,622,354 | Δ1 bp | 5.5% | coding (121/639 nt) | purN → | phosphoribosylglycinamide formyltransferase 1 |
| RA | 2,653,367 | G→A | 7.8% | intergenic (+28/‑488) | sseA → / → ryfA | 3‑mercaptopyruvate sulfurtransferase/novel sRNA, function unknown |
| RA | 2,653,372 | T→C | 7.7% | intergenic (+33/‑483) | sseA → / → ryfA | 3‑mercaptopyruvate sulfurtransferase/novel sRNA, function unknown |
| RA | 2,653,692 | A→T | 5.4% | intergenic (+353/‑163) | sseA → / → ryfA | 3‑mercaptopyruvate sulfurtransferase/novel sRNA, function unknown |
| RA | 2,653,693 | A→G | 5.5% | intergenic (+354/‑162) | sseA → / → ryfA | 3‑mercaptopyruvate sulfurtransferase/novel sRNA, function unknown |
| RA | 2,653,695 | A→T | 5.4% | intergenic (+356/‑160) | sseA → / → ryfA | 3‑mercaptopyruvate sulfurtransferase/novel sRNA, function unknown |
| RA | 2,653,697 | C→T | 5.2% | intergenic (+358/‑158) | sseA → / → ryfA | 3‑mercaptopyruvate sulfurtransferase/novel sRNA, function unknown |
| RA | 2,653,698 | A→T | 5.3% | intergenic (+359/‑157) | sseA → / → ryfA | 3‑mercaptopyruvate sulfurtransferase/novel sRNA, function unknown |
| RA | 2,704,304 | A→G | 5.5% | intergenic (‑241/+31) | rnc ← / ← lepB | RNase III/leader peptidase (signal peptidase I) |
| RA | 2,704,306 | A→T | 5.5% | intergenic (‑243/+29) | rnc ← / ← lepB | RNase III/leader peptidase (signal peptidase I) |
| RA | 2,704,308 | C→T | 5.5% | intergenic (‑245/+27) | rnc ← / ← lepB | RNase III/leader peptidase (signal peptidase I) |
| RA | 2,707,320 | A→T | 6.7% | intergenic (‑196/+2) | lepA ← / ← rseC | back‑translocating elongation factor EF4, GTPase/SoxR iron‑sulfur cluster reduction factor component |
| RA | 2,707,321 | A→T | 6.8% | intergenic (‑197/+1) | lepA ← / ← rseC | back‑translocating elongation factor EF4, GTPase/SoxR iron‑sulfur cluster reduction factor component |
| RA | 2,716,030 | T→G | 5.8% | intergenic (+20/+36) | eamB → / ← grcA | cysteine and O‑acetylserine exporter/autonomous glycyl radical cofactor |
| RA | 2,716,033 | C→A | 5.7% | intergenic (+23/+33) | eamB → / ← grcA | cysteine and O‑acetylserine exporter/autonomous glycyl radical cofactor |
| RA | 2,724,095 | C→A | 8.5% | intergenic (+13/‑33) | pssA → / → yfiM | phosphatidylserine synthase; CDP‑diacylglycerol‑serine O‑phosphatidyltransferase/putative lipoprotein |
| RA | 2,724,097 | T→A | 8.4% | intergenic (+15/‑31) | pssA → / → yfiM | phosphatidylserine synthase; CDP‑diacylglycerol‑serine O‑phosphatidyltransferase/putative lipoprotein |
| RA | 2,724,099 | T→G | 8.3% | intergenic (+17/‑29) | pssA → / → yfiM | phosphatidylserine synthase; CDP‑diacylglycerol‑serine O‑phosphatidyltransferase/putative lipoprotein |
| RA | 2,731,580 | C→T | 9.0% | intergenic (‑423/+20) | rrsG ← / ← clpB | 16S ribosomal RNA of rrnG operon/protein disaggregation chaperone |
| RA | 2,731,581 | G→T | 9.0% | intergenic (‑424/+19) | rrsG ← / ← clpB | 16S ribosomal RNA of rrnG operon/protein disaggregation chaperone |
| RA | 2,731,582 | A→C | 9.0% | intergenic (‑425/+18) | rrsG ← / ← clpB | 16S ribosomal RNA of rrnG operon/protein disaggregation chaperone |
| RA | 2,731,583 | A→G | 9.8% | intergenic (‑426/+17) | rrsG ← / ← clpB | 16S ribosomal RNA of rrnG operon/protein disaggregation chaperone |
| RA | 2,737,703 | A→G | 5.8% | intergenic (+57/‑42) | pheL → / → pheA | pheA gene leader peptide/chorismate mutase and prephenate dehydratase, P‑protein |
| RA | 2,737,705 | A→T | 6.1% | intergenic (+59/‑40) | pheL → / → pheA | pheA gene leader peptide/chorismate mutase and prephenate dehydratase, P‑protein |
| RA | 2,737,707 | C→T | 5.7% | intergenic (+61/‑38) | pheL → / → pheA | pheA gene leader peptide/chorismate mutase and prephenate dehydratase, P‑protein |
| RA | 2,737,711 | G→A | 5.9% | intergenic (+65/‑34) | pheL → / → pheA | pheA gene leader peptide/chorismate mutase and prephenate dehydratase, P‑protein |
| RA | 2,750,073 | G→T | 5.7% | intergenic (+13/+42) | yfjD → / ← grpE | UPF0053 family inner membrane protein/heat shock protein |
| RA | 2,750,078 | T→G | 5.8% | intergenic (+18/+37) | yfjD → / ← grpE | UPF0053 family inner membrane protein/heat shock protein |
| RA | 2,750,081 | C→A | 5.9% | intergenic (+21/+34) | yfjD → / ← grpE | UPF0053 family inner membrane protein/heat shock protein |
| RA | 2,750,086 | A→C | 6.0% | intergenic (+26/+29) | yfjD → / ← grpE | UPF0053 family inner membrane protein/heat shock protein |
| RA | 2,761,620 | T→G | 6.8% | K641Q (AAG→CAG) | yfjK ← | radiation resistance protein; DEAD/H helicase‑like protein; CP4‑57 putative defective prophage |
| RA | 2,761,623 | C→A | 6.4% | V640L (GTA→TTA) | yfjK ← | radiation resistance protein; DEAD/H helicase‑like protein; CP4‑57 putative defective prophage |
| RA | 2,778,123 | G→T | 5.5% | intergenic (+341/+23) | ypjF → / ← ypjA | CP4‑57 prophage; toxin of the YpjF‑YfjZ toxin‑antitoxin system/adhesin‑like autotransporter |
| RA | 2,778,124 | A→C | 5.6% | intergenic (+342/+22) | ypjF → / ← ypjA | CP4‑57 prophage; toxin of the YpjF‑YfjZ toxin‑antitoxin system/adhesin‑like autotransporter |
| RA | 2,796,375 | T→A | 5.3% | I138F (ATT→TTT) | ygaU ← | uncharacterized protein |
| RA | 2,801,056 | A→T | 5.1% | N31I (AAT→ATT) | nrdI → | NrdEF cluster assembly flavodoxin |
| RA | 2,807,091 | T→C | 6.2% | intergenic (+17/‑41) | proW → / → proX | glycine betaine/proline ABC transporter permease/glycine betaine/proline ABC transporter periplasmic binding protein; cold shock protein |
| RA | 2,807,093 | A→T | 6.6% | intergenic (+19/‑39) | proW → / → proX | glycine betaine/proline ABC transporter permease/glycine betaine/proline ABC transporter periplasmic binding protein; cold shock protein |
| RA | 2,807,095 | G→A | 6.5% | intergenic (+21/‑37) | proW → / → proX | glycine betaine/proline ABC transporter permease/glycine betaine/proline ABC transporter periplasmic binding protein; cold shock protein |
| RA | 2,810,872 | C→T | 6.2% | H35Y (CAC→TAC) ‡ | mprA → | transcriptional repressor of microcin B17 synthesis and multidrug efflux |
| RA | 2,810,873 | A→G | 6.2% | H35R (CAC→CGC) ‡ | mprA → | transcriptional repressor of microcin B17 synthesis and multidrug efflux |
| RA | 2,822,673 | C→T | 6.0% | intergenic (‑34/+35) | recX ← / ← recA | regulatory protein for RecA/DNA recombination and repair protein; ssDNA‑dependent ATPase; synaptase; ssDNA and dsDNA binding protein; ATP‑dependent homologous DNA strand exchanger; recombinase A; LexA autocleavage cofactor |
| RA | 2,822,678 | G→T | 6.1% | intergenic (‑39/+30) | recX ← / ← recA | regulatory protein for RecA/DNA recombination and repair protein; ssDNA‑dependent ATPase; synaptase; ssDNA and dsDNA binding protein; ATP‑dependent homologous DNA strand exchanger; recombinase A; LexA autocleavage cofactor |
| RA | 2,822,679 | A→C | 6.2% | intergenic (‑40/+29) | recX ← / ← recA | regulatory protein for RecA/DNA recombination and repair protein; ssDNA‑dependent ATPase; synaptase; ssDNA and dsDNA binding protein; ATP‑dependent homologous DNA strand exchanger; recombinase A; LexA autocleavage cofactor |
| RA | 2,822,684 | A→G | 6.8% | intergenic (‑45/+24) | recX ← / ← recA | regulatory protein for RecA/DNA recombination and repair protein; ssDNA‑dependent ATPase; synaptase; ssDNA and dsDNA binding protein; ATP‑dependent homologous DNA strand exchanger; recombinase A; LexA autocleavage cofactor |
| RA | 2,866,488 | G→C | 5.4% | intergenic (+23/+71) | ygbN → / ← rpoS | putative transporter/RNA polymerase, sigma S (sigma 38) factor |
| RA | 2,873,917 | G→C | 5.1% | H26D (CAT→GAT) | cysC ← | adenosine 5'‑phosphosulfate kinase |
| RA | 2,873,919 | C→T | 5.1% | G25D (GGT→GAT) | cysC ← | adenosine 5'‑phosphosulfate kinase |
| RA | 2,972,652 | A→T | 6.6% | intergenic (+15/+17) | tas → / ← lplT | putative NADP(H)‑dependent aldo‑keto reductase/lysophospholipid transporter |
| RA | 2,972,653 | A→T | 6.5% | intergenic (+16/+16) | tas → / ← lplT | putative NADP(H)‑dependent aldo‑keto reductase/lysophospholipid transporter |
| RA | 2,976,320 | T→G | 5.4% | noncoding (66/82 nt) | omrB ← | sRNA antisense regulator downregulates OM proteins and curli; positively regulated by OmpR/EnvZ, Hfq‑dependent |
| RA | 2,976,321 | C→A | 5.8% | noncoding (65/82 nt) | omrB ← | sRNA antisense regulator downregulates OM proteins and curli; positively regulated by OmpR/EnvZ, Hfq‑dependent |
| RA | 3,007,466 | T→C | 5.6% | intergenic (+14/‑44) | ygeW → / → ygeX | putative carbamoyltransferase/2,3‑diaminopropionate ammonia lyase, PLP‑dependent |
| RA | 3,007,473 | G→A | 5.7% | intergenic (+21/‑37) | ygeW → / → ygeX | putative carbamoyltransferase/2,3‑diaminopropionate ammonia lyase, PLP‑dependent |
| RA | 3,020,510 | G→T | 7.1% | intergenic (+21/‑30) | ssnA → / → ygfM | putative chlorohydrolase/aminohydrolase/putative oxidoreductase |
| RA | 3,020,511 | C→G | 7.1% | intergenic (+22/‑29) | ssnA → / → ygfM | putative chlorohydrolase/aminohydrolase/putative oxidoreductase |
| RA | 3,020,512 | A→C | 7.1% | intergenic (+23/‑28) | ssnA → / → ygfM | putative chlorohydrolase/aminohydrolase/putative oxidoreductase |
| RA | 3,067,320 | A→T | 5.4% | intergenic (‑147/+20) | ygfI ← / ← yggE | putative DNA‑binding transcriptional regulator/oxidative stress defense protein |
| RA | 3,067,323 | A→T | 5.0% | intergenic (‑150/+17) | ygfI ← / ← yggE | putative DNA‑binding transcriptional regulator/oxidative stress defense protein |
| RA | 3,156,590 | C→A | 11.4% | intergenic (+72/‑33) | yqhD → / → dkgA | aldehyde reductase, NADPH‑dependent/2,5‑diketo‑D‑gluconate reductase A |
| RA | 3,156,591 | T→G | 11.5% | intergenic (+73/‑32) | yqhD → / → dkgA | aldehyde reductase, NADPH‑dependent/2,5‑diketo‑D‑gluconate reductase A |
| RA | 3,180,505 | G→T | 7.5% | E29* (GAG→TAG) ‡ | ygiC → | ATP‑Grasp family ATPase |
| RA | 3,180,506 | A→C | 7.7% | E29A (GAG→GCG) ‡ | ygiC → | ATP‑Grasp family ATPase |
| RA | 3,183,345:1 | +T | 9.3% | intergenic (+22/+468) | zupT → / ← ribB | zinc transporter/3,4‑dihydroxy‑2‑butanone‑4‑phosphate synthase |
| RA | 3,183,350 | Δ1 bp | 8.9% | intergenic (+27/+463) | zupT → / ← ribB | zinc transporter/3,4‑dihydroxy‑2‑butanone‑4‑phosphate synthase |
| RA | 3,276,886 | C→A | 5.3% | intergenic (+33/‑116) | garD → / → prlF | D‑galactarate dehydrogenase/antitoxin of the SohA(PrlF)‑YhaV toxin‑antitoxin system |
| RA | 3,276,890 | G→A | 5.2% | intergenic (+37/‑112) | garD → / → prlF | D‑galactarate dehydrogenase/antitoxin of the SohA(PrlF)‑YhaV toxin‑antitoxin system |
| RA | 3,276,891 | T→G | 5.3% | intergenic (+38/‑111) | garD → / → prlF | D‑galactarate dehydrogenase/antitoxin of the SohA(PrlF)‑YhaV toxin‑antitoxin system |
| RA | 3,330,415 | Δ1 bp | 5.3% | intergenic (+19/+167) | dacB → / ← obgE | D‑alanyl‑D‑alanine carboxypeptidase/GTPase involved in cell partioning and DNA repair |
| RA | 3,330,419:1 | +T | 5.2% | intergenic (+23/+163) | dacB → / ← obgE | D‑alanyl‑D‑alanine carboxypeptidase/GTPase involved in cell partioning and DNA repair |
| RA | 3,332,822 | G→A | 10.5% | intergenic (‑87/+40) | yhbE ← / ← rpmA | EamA family inner membrane putative transporter/50S ribosomal subunit protein L27 |
| RA | 3,332,823 | T→C | 10.6% | intergenic (‑88/+39) | yhbE ← / ← rpmA | EamA family inner membrane putative transporter/50S ribosomal subunit protein L27 |
| RA | 3,354,537 | C→G | 6.6% | intergenic (‑487/‑188) | yhcC ← / → gltB | putative Fe‑S oxidoreductase, Radical SAM superfamily protein/glutamate synthase, large subunit |
| RA | 3,368,982 | G→C | 6.2% | intergenic (+28/+32) | yhcG → / ← yhcH | DUF1016 family protein in the PD‑(D/E)XK nuclease superfamily/DUF386 family protein, cupin superfamily |
| RA | 3,560,455:1 | +G | 100% | intergenic (‑2/+1) | glpR ← / ← glpR | pseudogene, DNA‑binding transcriptional repressor;regulator; Energy metabolism, carbon: Anaerobic respiration; repressor of the glp operon/pseudogene, DNA‑binding transcriptional repressor;regulator; Energy metabolism, carbon: Anaerobic respiration; repressor of the glp operon |
| RA | 3,608,695 | C→G | 7.4% | intergenic (+46/+56) | zntA → / ← tusA | zinc, cobalt and lead efflux system/mnm(5)‑s(2)U34‑tRNA 2‑thiolation sulfurtransferase |
| RA | 3,642,358 | T→A | 5.3% | intergenic (+27/+22) | dtpB → / ← rsmJ | dipeptide and tripeptide permease B/16S rRNA m(2)G1516 methyltransferase, SAM‑dependent |
| RA | 3,642,361 | T→A | 5.3% | intergenic (+30/+19) | dtpB → / ← rsmJ | dipeptide and tripeptide permease B/16S rRNA m(2)G1516 methyltransferase, SAM‑dependent |
| RA | 3,701,840 | A→G | 5.8% | intergenic (+6/+24) | yhjV → / ← dppF | putative transporter/dipeptide/heme ABC transporter ATPas |
| RA | 3,701,843 | Δ1 bp | 6.0% | intergenic (+9/+21) | yhjV → / ← dppF | putative transporter/dipeptide/heme ABC transporter ATPas |
| RA | 3,701,847:1 | +C | 5.9% | intergenic (+13/+17) | yhjV → / ← dppF | putative transporter/dipeptide/heme ABC transporter ATPas |
| RA | 3,701,850 | C→T | 6.0% | intergenic (+16/+14) | yhjV → / ← dppF | putative transporter/dipeptide/heme ABC transporter ATPas |
| RA | 3,708,427 | G→A | 6.7% | intergenic (‑722/+189) | dppA ← / ← proK | dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor/tRNA‑Pro |
| RA | 3,708,428 | T→A | 6.7% | intergenic (‑723/+188) | dppA ← / ← proK | dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor/tRNA‑Pro |
| RA | 3,708,429 | T→C | 7.3% | intergenic (‑724/+187) | dppA ← / ← proK | dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor/tRNA‑Pro |
| RA | 3,714,163:1 | +T | 5.9% | coding (2232/2334 nt) | bisC ← | biotin sulfoxide reductase |
| RA | 3,714,168 | Δ1 bp | 5.7% | coding (2227/2334 nt) | bisC ← | biotin sulfoxide reductase |
| RA | 3,774,207 | C→T | 6.1% | intergenic (+13/‑217) | mtlA → / → mtlD | mannitol‑specific PTS enzyme: IIA, IIB and IIC components/mannitol‑1‑phosphate dehydrogenase, NAD‑dependent |
| RA | 3,774,214 | C→T | 6.6% | intergenic (+20/‑210) | mtlA → / → mtlD | mannitol‑specific PTS enzyme: IIA, IIB and IIC components/mannitol‑1‑phosphate dehydrogenase, NAD‑dependent |
| RA | 3,774,215 | A→G | 6.6% | intergenic (+21/‑209) | mtlA → / → mtlD | mannitol‑specific PTS enzyme: IIA, IIB and IIC components/mannitol‑1‑phosphate dehydrogenase, NAD‑dependent |
| RA | 3,774,222 | A→G | 6.3% | intergenic (+28/‑202) | mtlA → / → mtlD | mannitol‑specific PTS enzyme: IIA, IIB and IIC components/mannitol‑1‑phosphate dehydrogenase, NAD‑dependent |
| RA | 3,781,051 | C→G | 7.4% | intergenic (+34/‑164) | lldD → / → trmL | L‑lactate dehydrogenase, FMN‑linked/tRNA Leu mC34,mU34 2'‑O‑methyltransferase, SAM‑dependent |
| RA | 3,831,757 | C→T | 5.1% | A434V (GCC→GTC) | yicH → | putative inner membrane‑anchored periplasmic AsmA family protein |
| RA | 3,877,558 | G→C | 5.3% | intergenic (‑93/+147) | yidB ← / ← gyrB | DUF937 family protein/DNA gyrase, subunit B |
| RA | 3,886,757 | T→C | 5.0% | intergenic (+35/‑71) | yidC → / → mnmE | membrane protein insertase/tRNA U34 5‑methylaminomethyl‑2‑thiouridine modification GTPase |
| RA | 3,891,502 | C→G | 7.8% | intergenic (+19/‑113) | tnaB → / → mdtL | tryptophan transporter of low affinity/multidrug efflux system protein |
| RA | 3,891,504 | T→A | 7.6% | intergenic (+21/‑111) | tnaB → / → mdtL | tryptophan transporter of low affinity/multidrug efflux system protein |
| RA | 3,891,506 | C→G | 7.2% | intergenic (+23/‑109) | tnaB → / → mdtL | tryptophan transporter of low affinity/multidrug efflux system protein |
| RA | 3,900,410 | A→T | 6.8% | P56P (CCT→CCA) | yieL ← | putative xylanase |
| RA | 3,959,480 | A→T | 8.7% | intergenic (+35/+52) | ilvC → / ← ppiC | ketol‑acid reductoisomerase, NAD(P)‑binding/peptidyl‑prolyl cis‑trans isomerase C (rotamase C) |
| RA | 3,959,481 | C→G | 8.7% | intergenic (+36/+51) | ilvC → / ← ppiC | ketol‑acid reductoisomerase, NAD(P)‑binding/peptidyl‑prolyl cis‑trans isomerase C (rotamase C) |
| RA | 3,971,996 | T→A | 5.1% | L246Q (CTG→CAG) | wecC → | UDP‑N‑acetyl‑D‑mannosaminuronic acid dehydrogenase |
| RA | 3,980,726 | G→A | 7.1% | intergenic (+30/‑161) | wecG → / → yifK | UDP‑N‑acetyl‑D‑mannosaminuronic acid transferase/putative APC family amino acid transporter |
| RA | 3,980,727 | T→C | 6.4% | intergenic (+31/‑160) | wecG → / → yifK | UDP‑N‑acetyl‑D‑mannosaminuronic acid transferase/putative APC family amino acid transporter |
| JC JC | 3,992,705 | IS5 (+) +4 bp | 94.6% | coding (1553‑1556/2547 nt) | cyaA → | adenylate cyclase |
| RA | 4,035,614 | T→A | 10.5% | noncoding (84/1542 nt) | rrsA → | 16S ribosomal RNA of rrnA operon |
| RA | 4,049,986 | G→T | 5.0% | noncoding (88/109 nt) | spf → | Spot 42 sRNA antisense regulator of galK translation, Hfq‑dependent |
| RA | 4,049,989 | A→C | 5.0% | noncoding (91/109 nt) | spf → | Spot 42 sRNA antisense regulator of galK translation, Hfq‑dependent |
| RA | 4,060,261 | G→T | 5.6% | intergenic (+31/‑186) | typA → / → yihL | GTP‑binding protein/putative DNA‑binding transcriptional regulator |
| RA | 4,060,264 | A→C | 5.7% | intergenic (+34/‑183) | typA → / → yihL | GTP‑binding protein/putative DNA‑binding transcriptional regulator |
| RA | 4,070,413 | T→G | 8.0% | intergenic (‑12/+102) | yihR ← / ← yihS | putative sulphoquinovose mutarotase/sulphoquinovose isomerase |
| RA | 4,117,005 | T→G | 94.7% | D73A (GAT→GCT) | glpK ← | glycerol kinase |
| RA | 4,127,251 | C→T | 9.2% | intergenic (+26/+35) | rpmE → / ← yiiX | 50S ribosomal subunit protein L31/putative lipid binding hydrolase, DUF830 family protein |
| RA | 4,127,252 | A→G | 8.6% | intergenic (+27/+34) | rpmE → / ← yiiX | 50S ribosomal subunit protein L31/putative lipid binding hydrolase, DUF830 family protein |
| RA | 4,144,732 | G→C | 5.6% | Q246H (CAG→CAC) | pflD → | putative glycine radical domain‑containing pyruvate formate‑lyase |
| RA | 4,144,735 | G→C | 5.6% | A247A (GCG→GCC) | pflD → | putative glycine radical domain‑containing pyruvate formate‑lyase |
| RA | 4,171,781 | A→G | 9.4% | intergenic (+25/‑276) | rrfB → / → murB | 5S ribosomal RNA of rrnB operon/UDP‑N‑acetylenolpyruvoylglucosamine reductase, FAD‑binding |
| RA | 4,183,817 | G→A | 26.2% | G858D (GGT→GAT) | rpoB → | RNA polymerase, beta subunit |
| RA | 4,183,994 | C→A | 17.7% | S917Y (TCT→TAT) | rpoB → | RNA polymerase, beta subunit |
| RA | 4,188,509 | A→G | 6.3% | T1054A (ACC→GCC) | rpoC → | RNA polymerase, beta prime subunit |
| RA | 4,213,179 | Δ1 bp | 5.5% | intergenic (+20/‑55) | rrfE → / → yjaA | 5S ribosomal RNA of rrnE operon/stress‑induced protein |
| RA | 4,213,182 | A→T | 5.6% | intergenic (+23/‑52) | rrfE → / → yjaA | 5S ribosomal RNA of rrnE operon/stress‑induced protein |
| RA | 4,213,185 | A→T | 5.6% | intergenic (+26/‑49) | rrfE → / → yjaA | 5S ribosomal RNA of rrnE operon/stress‑induced protein |
| RA | 4,213,187:1 | +A | 5.8% | intergenic (+28/‑47) | rrfE → / → yjaA | 5S ribosomal RNA of rrnE operon/stress‑induced protein |
| RA | 4,227,550 | G→A | 5.2% | intergenic (+39/‑181) | metH → / → yjbB | homocysteine‑N5‑methyltetrahydrofolate transmethylase, B12‑dependent/putative Na+/Pi‑cotransporter |
| RA | 4,274,740 | G→A | 7.3% | intergenic (+79/+20) | ssb → / ← yjcB | single‑stranded DNA‑binding protein/putative inner membrane protein |
| RA | 4,274,742 | T→A | 7.1% | intergenic (+81/+18) | ssb → / ← yjcB | single‑stranded DNA‑binding protein/putative inner membrane protein |
| RA | 4,274,744 | T→C | 7.2% | intergenic (+83/+16) | ssb → / ← yjcB | single‑stranded DNA‑binding protein/putative inner membrane protein |
| RA | 4,285,866 | Δ1 bp | 7.3% | coding (1506/1959 nt) | acs ← | acetyl‑CoA synthetase |
| RA | 4,285,870:1 | +G | 7.3% | coding (1502/1959 nt) | acs ← | acetyl‑CoA synthetase |
| RA | 4,296,060 | C→T | 22.6% | intergenic (+266/+376) | gltP → / ← yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| RA | 4,296,380:1 | +CG | 100% | intergenic (+586/+56) | gltP → / ← yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| RA | 4,307,294 | A→T | 5.4% | L169Q (CTG→CAG) | alsK ← | D‑allose kinase |
| RA | 4,307,298 | G→A | 5.6% | P168S (CCC→TCC) | alsK ← | D‑allose kinase |
| RA | 4,314,227 | A→T | 7.3% | intergenic (+30/+117) | yjdP → / ← phnP | putative periplasmic protein/5‑phospho‑alpha‑D‑ribosyl 1,2‑cyclic phosphate phosphodiesterase |
| RA | 4,314,233 | A→T | 8.6% | intergenic (+36/+111) | yjdP → / ← phnP | putative periplasmic protein/5‑phospho‑alpha‑D‑ribosyl 1,2‑cyclic phosphate phosphodiesterase |
| RA | 4,314,239 | A→T | 9.0% | intergenic (+42/+105) | yjdP → / ← phnP | putative periplasmic protein/5‑phospho‑alpha‑D‑ribosyl 1,2‑cyclic phosphate phosphodiesterase |
| RA | 4,356,446 | A→T | 5.1% | intergenic (‑35/+24) | dtpC ← / ← cadA | dipeptide and tripeptide permease/lysine decarboxylase, acid‑inducible |
| RA | 4,362,528 | G→A | 6.4% | intergenic (‑175/+23) | yjdQ ← / ← pheU | pseudogene, P4‑like integrase remnant/tRNA‑Phe |
| RA | 4,362,529 | T→C | 6.5% | intergenic (‑176/+22) | yjdQ ← / ← pheU | pseudogene, P4‑like integrase remnant/tRNA‑Phe |
| RA | 4,366,854 | T→G | 9.8% | intergenic (‑81/+37) | dcuA ← / ← aspA | C4‑dicarboxylate antiporter/aspartate ammonia‑lyase |
| RA | 4,366,855 | C→A | 10.3% | intergenic (‑82/+36) | dcuA ← / ← aspA | C4‑dicarboxylate antiporter/aspartate ammonia‑lyase |
| RA | 4,376,819 | A→T | 6.7% | intergenic (+120/‑56) | ecnB → / → sugE | entericidin B membrane lipoprotein/multidrug efflux system protein |
| RA | 4,376,822 | A→T | 6.7% | intergenic (+123/‑53) | ecnB → / → sugE | entericidin B membrane lipoprotein/multidrug efflux system protein |
| RA | 4,409,407 | T→A | 5.5% | S45T (TCT→ACT) | rlmB → | 23S rRNA mG2251 2'‑O‑ribose methyltransferase, SAM‑dependent |
| RA | 4,409,410:1 | +A | 5.2% | coding (136/732 nt) | rlmB → | 23S rRNA mG2251 2'‑O‑ribose methyltransferase, SAM‑dependent |
| RA | 4,422,887 | G→A | 5.5% | A14A (GCG→GCA) | ulaE → | L‑xylulose 5‑phosphate 3‑epimerase |
| RA | 4,422,895 | C→G | 6.8% | A17G (GCC→GGC) | ulaE → | L‑xylulose 5‑phosphate 3‑epimerase |
| RA | 4,439,845 | T→A | 5.9% | intergenic (+52/+27) | ytfK → / ← ytfL | DUF1107 family protein/UPF0053 family inner membrane protein |
| RA | 4,472,434 | G→A | 7.3% | R34* (CGA→TGA) | pyrL ← | pyrBI operon leader peptide |
| RA | 4,472,437 | T→C | 7.0% | N33D (AAT→GAT) | pyrL ← | pyrBI operon leader peptide |
| RA | 4,479,012 | A→T | 5.5% | intergenic (+123/+22) | rraB → / ← yjgM | protein inhibitor of RNase E/GNAT family putative N‑acetyltransferase |
| RA | 4,479,016 | G→C | 5.6% | intergenic (+127/+18) | rraB → / ← yjgM | protein inhibitor of RNase E/GNAT family putative N‑acetyltransferase |
| RA | 4,479,020 | A→T | 5.6% | intergenic (+131/+14) | rraB → / ← yjgM | protein inhibitor of RNase E/GNAT family putative N‑acetyltransferase |
| RA | 4,520,500 | Δ1 bp | 6.4% | intergenic (‑176/+171) | yjhU ← / ← yjhF | putative DNA‑binding transcriptional regulator; KpLE2 phage‑like element/putative transporter |
| RA | 4,520,504:1 | +T | 6.6% | intergenic (‑180/+167) | yjhU ← / ← yjhF | putative DNA‑binding transcriptional regulator; KpLE2 phage‑like element/putative transporter |
| RA | 4,551,422 | T→A | 5.7% | intergenic (‑126/‑214) | gntP ← / → uxuA | fructuronate transporter/mannonate hydrolase |
| RA | 4,608,604 | C→G | 5.2% | I140M (ATC→ATG) | rimI → | ribosomal‑protein‑S18‑alanine N‑acetyltransferase |
| RA | 4,612,329 | A→G | 6.7% | intergenic (+40/‑82) | ytjA → / → yjjU | uncharacterized protein/putative patatin‑like family phospholipase |
| RA | 4,612,330 | G→C | 6.6% | intergenic (+41/‑81) | ytjA → / → yjjU | uncharacterized protein/putative patatin‑like family phospholipase |
| RA | 4,612,331 | C→T | 6.6% | intergenic (+42/‑80) | ytjA → / → yjjU | uncharacterized protein/putative patatin‑like family phospholipase |
| RA | 4,637,557:1 | +A | 15.8% | coding (862/1425 nt) | creC → | sensory histidine kinase in two‑component regulatory system with CreB or PhoB |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3423750–3424234 | 3424557–3424238 | 5–808 | 98 [96] | [96] 100 | [rrfD]–[rrlD] | [rrfD],[rrlD] |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 72136 = | NA (NA) | 10 (0.060) | 3/244 | NT | 7.4% | noncoding (1/85 nt) | REP7 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP7 (repetitive extragenic palindromic) element; contains 2 REP sequences |
| ? | NC_000913 | 4295981 = | 125 (0.700) | noncoding (147/600 nt) | RIP321 (repetitive extragenic palindromic) element; contains 11 REP sequences and 4 IHF sites | RIP321 (repetitive extragenic palindromic) element; contains 11 REP sequences and 4 IHF sites | |||||
| * | ? | NC_000913 | = 224374 | NA (NA) | 3 (0.020) | 3/244 | NT | NA | noncoding (604/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon |
| ? | NC_000913 | = 224403 | NA (NA) | noncoding (633/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon | |||||
| * | ? | NC_000913 | 227963 = | NA (NA) | 13 (0.070) | 13/248 | NT | NA | noncoding (2205/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon |
| ? | NC_000913 | 227978 = | NA (NA) | noncoding (2220/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon | |||||
| * | ? | NC_000913 | 274347 = | NA (NA) | 3 (0.020) | 3/244 | NT | NA | noncoding (803/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | 274410 = | NA (NA) | noncoding (740/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | 274620 = | NA (NA) | 4 (0.020) | 3/240 | NT | NA | noncoding (530/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | 274663 = | NA (NA) | noncoding (487/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | = 274653 | NA (NA) | 5 (0.030) | 5/250 | NT | NA | noncoding (497/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | = 274663 | NA (NA) | noncoding (487/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | = 274695 | NA (NA) | 6 (0.030) | 4/250 | NT | NA | noncoding (455/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | = 274727 | NA (NA) | noncoding (423/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | = 315646 | NA (NA) | 5 (0.030) | 5/248 | NT | NA | noncoding (418/1255 nt) | IS3 | repeat region |
| ? | NC_000913 | = 315665 | NA (NA) | noncoding (437/1255 nt) | IS3 | repeat region | |||||
| * | ? | NC_000913 | = 381669 | NA (NA) | 5 (0.030) | 5/244 | NT | NA | noncoding (410/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | = 381695 | NA (NA) | noncoding (436/1331 nt) | IS2 | repeat region | |||||
| * | ? | NC_000913 | = 381910 | NA (NA) | 8 (0.040) | 8/246 | NT | NA | noncoding (651/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | = 381923 | NA (NA) | noncoding (664/1331 nt) | IS2 | repeat region | |||||
| * | ? | NC_000913 | = 937227 | NA (NA) | 7 (0.040) | 6/242 | NT | NA | noncoding (4/36 nt) | REP85 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP85 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | NC_000913 | = 937259 | NA (NA) | noncoding (36/36 nt) | REP85 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP85 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
| * | ? | NC_000913 | 1207790 = | 65 (0.340) | 115 (0.690) | 84/226 | NT | 59.9% | coding (290/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | 1209619 = | 97 (0.580) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | = 1207805 | 61 (0.320) | 87 (0.520) | 63/226 | NT | 53.6% | coding (305/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | = 1209602 | 97 (0.580) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | 1886815 = | 119 (0.630) | 6 (0.030) | 6/236 | NT | 5.7% | intergenic (+5/+49) | yeaX/rnd | putative YeaWX dioxygenase beta subunit, reductase component/ribonuclease D |
| ? | NC_000913 | 1886858 = | 91 (0.520) | intergenic (+48/+6) | yeaX/rnd | putative YeaWX dioxygenase beta subunit, reductase component/ribonuclease D | |||||
| * | ? | NC_000913 | 2066726 = | NA (NA) | 7 (0.040) | 5/254 | NT | NA | noncoding (628/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | 2066765 = | NA (NA) | noncoding (589/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | 2493676 = | 142 (0.750) | 7 (0.040) | 7/230 | NT | 5.6% | intergenic (‑422/+91) | frc/yfdX | formyl‑CoA transferase, NAD(P)‑binding/uncharacterized protein |
| ? | NC_000913 | 2493713 = | 110 (0.650) | intergenic (‑459/+54) | frc/yfdX | formyl‑CoA transferase, NAD(P)‑binding/uncharacterized protein | |||||
| * | ? | NC_000913 | 2539608 = | NA (NA) | 14 (0.080) | 11/246 | NT | NA | noncoding (2/36 nt) | REP175 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP175 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | NC_000913 | 2539638 = | NA (NA) | noncoding (32/36 nt) | REP175 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP175 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
| * | ? | NC_000913 | 2726200 = | NA (NA) | 60 (0.330) | 23/246 | NT | NA | intergenic (‑12/+81) | rrfG/rrlG | 5S ribosomal RNA of rrnG operon/23S ribosomal RNA of rrnG operon |
| ? | NC_000913 | 2726224 = | NA (NA) | intergenic (‑36/+57) | rrfG/rrlG | 5S ribosomal RNA of rrnG operon/23S ribosomal RNA of rrnG operon | |||||
| * | ? | NC_000913 | 2729475 = | 81 (0.430) | 19 (0.110) | 10/238 | NT | 22.9% | intergenic (‑31/+141) | gltW/rrsG | tRNA‑Glu/16S ribosomal RNA of rrnG operon |
| ? | NC_000913 | = 4168363 | 53 (0.300) | intergenic (+163/‑9) | rrsB/gltT | 16S ribosomal RNA of rrnB operon/tRNA‑Glu | |||||
| * | ? | NC_000913 | = 2729484 | 89 (0.470) | 6 (0.030) | 4/238 | NT | 8.2% | intergenic (‑40/+132) | gltW/rrsG | tRNA‑Glu/16S ribosomal RNA of rrnG operon |
| ? | NC_000913 | 4168374 = | 53 (0.300) | noncoding (3/76 nt) | gltT | tRNA‑Glu | |||||
| * | ? | NC_000913 | 3134834 = | 167 (0.880) | 10 (0.060) | 9/240 | NT | 6.3% | intergenic (+11/+38) | yghT/pitB | putative ATP‑binding protein/phosphate transporter |
| ? | NC_000913 | 3134863 = | 141 (0.800) | intergenic (+40/+9) | yghT/pitB | putative ATP‑binding protein/phosphate transporter | |||||
| * | ? | NC_000913 | = 3319994 | 205 (1.080) | 11 (0.060) | 8/248 | NT | 5.3% | coding (1620/1626 nt) | yhbX | putative EptAB family phosphoethanolamine transferase, inner membrane protein |
| ? | NC_000913 | = 3320009 | 197 (1.080) | coding (1605/1626 nt) | yhbX | putative EptAB family phosphoethanolamine transferase, inner membrane protein | |||||
| * | ? | NC_000913 | 3563582 = | NA (NA) | 4 (0.020) | 4/244 | NT | NA | noncoding (1/98 nt) | RIP256 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP256 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
| ? | NC_000913 | 3563607 = | NA (NA) | noncoding (26/98 nt) | RIP256 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP256 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | |||||
| * | ? | NC_000913 | 3620569 = | NA (NA) | 19 (0.100) | 9/246 | NT | 100% | coding (1378/4236 nt) | rhsB | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| ? | NC_000913 | 3620582 = | 0 (0.000) | coding (1391/4236 nt) | rhsB | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor | |||||
| * | ? | NC_000913 | 3721045 = | 199 (1.050) | 570 (3.030) | 191/256 | NT | 74.1% | noncoding (413/1443 nt) | IS150 | repeat region |
| ? | NC_000913 | = 3839774 | 201 (1.070) | coding (220/819 nt) | nlpA | cytoplasmic membrane lipoprotein‑28 | |||||
| * | ? | NC_000913 | = 4171803 | 132 (0.700) | 51 (0.270) | 9/254 | NT | 23.3% | intergenic (+47/‑254) | rrfB/murB | 5S ribosomal RNA of rrnB operon/UDP‑N‑acetylenolpyruvoylglucosamine reductase, FAD‑binding |
| ? | NC_000913 | = 4213162 | 206 (1.100) | intergenic (+3/‑72) | rrfE/yjaA | 5S ribosomal RNA of rrnE operon/stress‑induced protein | |||||
| * | ? | NC_000913 | = 4417460 | 204 (1.070) | 10 (0.060) | 9/244 | NT | 5.1% | coding (509/750 nt) | yjfP | acyl CoA esterase |
| ? | NC_000913 | = 4417479 | 182 (1.010) | coding (528/750 nt) | yjfP | acyl CoA esterase | |||||