mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | BS168_reference_genome | 87,944 | T→A | 6.0% | V104E (GTG→GAG) | dusB → | tRNA‑dihydrouridine synthase B |
| RA | BS168_reference_genome | 104,346 | G→T | 5.8% | D259Y (GAT→TAT) | clpC → | class III stress response‑related ATPase, AAA+ superfamily |
| RA | BS168_reference_genome | 143,659 | C→T | 100% | S100F (TCT→TTT) | rpsE → | ribosomal protein S5 |
| RA | BS168_reference_genome | 165,749 | Δ1 bp | 100% | intergenic (+42/‑5) | rrnI‑5S → / → trnI‑Asn | ribosomal RNA‑5S/tRNA‑Asn |
| RA | BS168_reference_genome | 165,751 | Δ1 bp | 100% | intergenic (+44/‑3) | rrnI‑5S → / → trnI‑Asn | ribosomal RNA‑5S/tRNA‑Asn |
| RA | BS168_reference_genome | 165,825:1 | +C | 100% | noncoding (72/72 nt) | trnI‑Asn → | tRNA‑Asn |
| RA | BS168_reference_genome | 166,037:1 | +T | 100% | intergenic (+4/‑27) | trnI‑Gly → / → trnI‑Arg | tRNA‑Gly/tRNA‑Arg |
| RA | BS168_reference_genome | 166,344 | Δ1 bp | 100% | intergenic (+16/‑156) | trnI‑Ala → / → rrnH‑16S | tRNA‑Ala/ribosomal RNA‑16S |
| RA | BS168_reference_genome | 196,543 | A→G | 9.3% | K111E (AAA→GAA) | cdaA → | diadenylate cyclase |
| RA | BS168_reference_genome | 238,265 | G→T | 21.1% | pseudogene (184/285 nt) | ybfEc ← | conserved protein of unknown function (C‑terminal end) |
| RA | BS168_reference_genome | 291,913 | A→G | 11.5% | Q333Q (CAA→CAG) | ansZ → | L‑asparaginase 2 (putative lipoprotein) |
| RA | BS168_reference_genome | 353,749 | A→G | 13.0% | I298V (ATT→GTT) | ffoR → | Fur‑regulated NADPH:ferredoxin oxidoreductase |
| RA | BS168_reference_genome | 376,018 | Δ1 bp | 100% | intergenic (‑220/‑14) | hxlA ← / → hxlR | 3‑hexulose‑6‑phosphate synthase (HPS)/positive regulator of hxlAB expression (formaldehyde sensing) |
| RA | BS168_reference_genome | 404,950 | T→C | 5.4% | E22E (GAA→GAG) | ycxB ← | hypothetical protein |
| RA | BS168_reference_genome | 419,079 | G→A | 7.6% | D363N (GAC→AAC) | yclG → | putative uronase |
| RA | BS168_reference_genome | 434,025 | C→T | 9.2% | V237V (GTC→GTT) | pbtO → | petrobactin iron‑siderophore ABC transporter (permease) |
| RA | BS168_reference_genome | 452,995 | G→A | 6.3% | G56S (GGC→AGC) | ycsA → | putative tartrate dehydrogenase |
| RA | BS168_reference_genome | 501,751 | G→A | 5.8% | S58N (AGC→AAC) | ydbI → | putative integral inner membrane protein |
| RA | BS168_reference_genome | 557,865:1 | +T | 100% | intergenic (+416/‑8) | yddT → / → ydzN | putative exported phage protein/hypothetical protein |
| RA | BS168_reference_genome | 851,659 | C→T | 5.5% | G431G (GGC→GGT) | treP → | phosphotransferase system (PTS) trehalose‑specific enzyme IIBC component |
| RA | BS168_reference_genome | 874,963 | T→C | 7.7% | intergenic (+161/‑465) | yfjO → / → yfzA | putative RNA methyltransferase/conserved hypothetical protein |
| RA | BS168_reference_genome | 892,022 | A→T | 100% | N196I (AAT→ATT) | malR → | transcriptional activator of the Mal operon |
| RA | BS168_reference_genome | 900,276 | C→T | 7.3% | A66V (GCG→GTG) | yfiG → | putative sugar/proton transporter |
| RA | BS168_reference_genome | 922,964 | Δ1 bp | 7.5% | coding (347/882 nt) | yfhB → | putative isomerase |
| RA | BS168_reference_genome | 944,526 | A→G | 92.1% | K14E (AAG→GAG) | perR → | transcriptional regulator (Fur family) |
| RA | BS168_reference_genome | 960,972 | T→G | 10.8% | K5N (AAA→AAC) | katA ← | vegetative catalase 1 |
| RA | BS168_reference_genome | 966,494 | G→C | 26.1% | A59G (GCG→GGG) | ygaO ← | putative integral inner membrane protein |
| RA | BS168_reference_genome | 981,799 | G→A | 6.7% | V66I (GTT→ATT) | yhcG → | putative ABC transporter ATP‑binding protein |
| RA | BS168_reference_genome | 1,023,150 | C→A | 29.3% | intergenic (+50/‑200) | yhdF → / → bcaP | putative NAD(P)‑dependent dehydrogenase/branched‑chain amino acid transporter or methylthioribose‑degradation metabolite exporter |
| RA | BS168_reference_genome | 1,067,071 | G→A | 6.1% | W332* (TGG→TAG) | sbcE → | ATPase involved in DNA double strand break repair and recombination |
| RA | BS168_reference_genome | 1,073,367:1 | +A | 6.9% | coding (351/612 nt) | scoC ← | transcriptional regulator of extracellular protease production, sporulation and bacilysin production (MarR family) |
| RA | BS168_reference_genome | 1,073,367:2 | +A | 6.9% | coding (351/612 nt) | scoC ← | transcriptional regulator of extracellular protease production, sporulation and bacilysin production (MarR family) |
| RA | BS168_reference_genome | 1,204,963 | T→A | 22.8% | intergenic (‑47/‑202) | yjzD ← / → yjaU | forespore targeted protein/conserved hypothetical protein |
| RA | BS168_reference_genome | 1,220,375 | A→C | 16.7% | N176T (AAC→ACC) | oppA → | oligopeptide ABC transporter (binding lipoprotein) |
| RA | BS168_reference_genome | 1,317,152:1 | +GT | 100% | intergenic (+23/+5) | phrA → / ← yjpA | secreted inhibitor of the activity of phosphatase RapA (quorum sensing)/putative enzyme |
| RA | BS168_reference_genome | 1,317,153:1 | +T | 100% | intergenic (+24/+4) | phrA → / ← yjpA | secreted inhibitor of the activity of phosphatase RapA (quorum sensing)/putative enzyme |
| RA | BS168_reference_genome | 1,320,397 | T→G | 17.4% | H236Q (CAT→CAG) | xpdC → | phage PBSX; manganese‑containing peroxidase |
| RA | BS168_reference_genome | 1,338,342 | A→C | 15.3% | N1126T (AAC→ACC) | xkdO → | phage PBSX; putative tape measure protein |
| RA | BS168_reference_genome | 1,349,495 | G→T | 100% | A325A (GCC→GCA) | pitB ← | putative low‑affinity inorganic phosphate transporter |
| RA | BS168_reference_genome | 1,450,050 | A→G | 5.8% | A267A (GCA→GCG) | ykvU → | spore membrane protein involved in germination |
| RA | BS168_reference_genome | 1,474,890 | C→T | 100% | L45L (TTG→TTA) | kre ← | regulator of transcription factor ComK function via modulation of mRNA stability |
| RA | BS168_reference_genome | 1,511,878 | C→A | 24.8% | Q191K (CAA→AAA) | sipT → | type I signal peptidase |
| RA | BS168_reference_genome | 1,511,930 | G→T | 23.2% | S88* (TCA→TAA) | ykoA ← | putative membrane protein of unknown function |
| RA | BS168_reference_genome | 1,522,146 | T→C | 10.8% | F266L (TTT→CTT) | adeC → | adenine deaminase |
| RA | BS168_reference_genome | 1,616,534 | A→C | 18.4% | T90P (ACG→CCG) | ylyA → | sporulation‑related RNA polymerase‑binding factor |
| RA | BS168_reference_genome | 1,620,410 | T→C | 7.4% | intergenic (+80/‑66) | pyrP → / → pyrB | uracil permease/aspartate carbamoyltransferase |
| RA | BS168_reference_genome | 1,690,758 | C→A | 100% | R214S (CGT→AGT) | codY → | transcriptional regulator, GTP and BCAA‑dependent |
| RA | BS168_reference_genome | 1,719,477 | T→C | 10.2% | F235L (TTC→CTC) | tsf → | elongation factor Ts |
| RA | BS168_reference_genome | 1,747,662 | A→G | 6.8% | V180V (GTA→GTG) | dapG → | aspartokinase I (alpha and beta subunits) |
| RA | BS168_reference_genome | 1,749,907 | G→T | 100% | D164Y (GAC→TAC) | rnjB → | dual activity 5' exo‑and endoribonuclease J2 |
| RA | BS168_reference_genome | 1,915,114 | T→C | 15.4% | intergenic (+119/‑107) | yndK → / → pghL | putative phage/plasmid replication protein/phage gamma‑polyglutamate hydrolase |
| RA | BS168_reference_genome | 1,923,465 | Δ1 bp | 5.6% | coding (232/708 nt) | ccdA → | cytochrome c‑type biogenesis protein CcdA; thiol‑disulfide oxido‑reductase |
| RA | BS168_reference_genome | 1,999,126 | A→T | 24.6% | A230A (GCT→GCA) | dacC ← | D‑alanyl‑D‑alanine carboxypeptidase |
| RA | BS168_reference_genome | 2,070,110 | T→C | 7.5% | intergenic (+135/+134) | bsrE → / ← yobJ | type I toxin (BsrE/AsrE)/conserved protein of unknown function; putative defective prophage 6 |
| RA | BS168_reference_genome | 2,096,912 | A→G | 8.1% | L22P (CTT→CCT) | azoJ ← | FMN‑dependent NADH‑azoreductase |
| RA | BS168_reference_genome | 2,097,080:1 | +A | 100% | intergenic (‑104/+46) | azoJ ← / ← yocK | FMN‑dependent NADH‑azoreductase/putative general stress protein |
| RA | BS168_reference_genome | 2,128,562 | C→A | 7.1% | G169W (GGG→TGG) | yodD ← | putative hydrolase |
| RA | BS168_reference_genome | 2,232,019 | T→A | 5.5% | Y375* (TAT→TAA) | yonF → | putative P‑loop ATPase; phage SPbeta |
| RA | BS168_reference_genome | 2,247,591 | A→G | 9.9% | intergenic (‑48/‑298) | youB ← / → yomK | conserved phage protein of unknown function; phage SPbeta/conserved protein of unknown function; phage SPbeta |
| RA | BS168_reference_genome | 2,271,424 | T→C | 100% | R78R (AGA→AGG) | uvrX ← | lesion bypass phage DNA polymerase; phage SPbeta |
| RA | BS168_reference_genome | 2,271,505 | C→T | 100% | V51V (GTG→GTA) | uvrX ← | lesion bypass phage DNA polymerase; phage SPbeta |
| RA | BS168_reference_genome | 2,271,523 | A→C | 100% | D45E (GAT→GAG) | uvrX ← | lesion bypass phage DNA polymerase; phage SPbeta |
| RA | BS168_reference_genome | 2,296,578 | C→A | 8.7% | V9F (GTT→TTT) | ypkP ← | putative 1‑acyl‑sn‑glycerol‑3‑phosphate acyltransferase |
| RA | BS168_reference_genome | 2,306,179 | G→A | 6.9% | G268S (GGC→AGC) | metAA → | homoserine O‑acetyltransferase |
| RA | BS168_reference_genome | 2,318,201 | C→A | 27.7% | V415L (GTA→TTA) | pbuX ← | xanthine permease |
| MC JC | BS168_reference_genome | 2,344,013 | Δ39 bp | 100% | coding (2570‑2608/2745 nt) | ponA → | peptidoglycan glycosyltransferase (penicillin‑binding proteins 1A and 1B) |
| RA | BS168_reference_genome | 2,375,679 | A→G | 15.9% | I73I (ATT→ATC) ‡ | trpD ← | anthranilate phosphoribosyltransferase |
| RA | BS168_reference_genome | 2,375,681 | T→C | 15.3% | I73V (ATT→GTT) ‡ | trpD ← | anthranilate phosphoribosyltransferase |
| RA | BS168_reference_genome | 2,375,710 | T→C | 15.9% | H63R (CAC→CGC) | trpD ← | anthranilate phosphoribosyltransferase |
| RA | BS168_reference_genome | 2,375,721 | T→C | 14.7% | A59A (GCA→GCG) | trpD ← | anthranilate phosphoribosyltransferase |
| RA | BS168_reference_genome | 2,375,727 | C→T | 16.0% | V57V (GTG→GTA) | trpD ← | anthranilate phosphoribosyltransferase |
| RA | BS168_reference_genome | 2,375,733 | A→G | 18.2% | G55G (GGT→GGC) | trpD ← | anthranilate phosphoribosyltransferase |
| RA | BS168_reference_genome | 2,375,738 | C→T | 18.1% | A54T (GCG→ACG) | trpD ← | anthranilate phosphoribosyltransferase |
| RA | BS168_reference_genome | 2,375,739 | A→T | 20.0% | L53L (CTT→CTA) | trpD ← | anthranilate phosphoribosyltransferase |
| RA | BS168_reference_genome | 2,387,878:1 | +A | 100% | coding (711/735 nt) | yphF ← | putative lipoprotein of unknown function |
| RA | BS168_reference_genome | 2,394,731 | T→A | 9.5% | K361M (AAG→ATG) | rpfA ← | RNA degradation presenting factor (ribosomal protein S1 homolog) |
| RA | BS168_reference_genome | 2,421,950 | C→T | 6.5% | A75T (GCG→ACG) | rluB ← | 23S rRNA pseudouridine 2633 (=2605 standard) pseudouridine synthase |
| RA | BS168_reference_genome | 2,480,646 | 2 bp→AT | 100% | intergenic (+21/+103) | zwf → / ← gndA | glucose‑6‑phosphate 1‑dehydrogenase (NADP‑dependent)/NADP+‑dependent 6‑P‑gluconate dehydrogenase |
| RA | BS168_reference_genome | 2,480,654 | Δ1 bp | 100% | intergenic (+29/+96) | zwf → / ← gndA | glucose‑6‑phosphate 1‑dehydrogenase (NADP‑dependent)/NADP+‑dependent 6‑P‑gluconate dehydrogenase |
| RA | BS168_reference_genome | 2,480,667 | Δ1 bp | 100% | intergenic (+42/+83) | zwf → / ← gndA | glucose‑6‑phosphate 1‑dehydrogenase (NADP‑dependent)/NADP+‑dependent 6‑P‑gluconate dehydrogenase |
| RA | BS168_reference_genome | 2,555,006 | A→G | 10.0% | I81T (ATA→ACA) | tapA ← | lipoprotein for biofilm formation |
| RA | BS168_reference_genome | 2,581,726:1 | +T | 100% | intergenic (‑109/+45) | pstS ← / ← pbpA | phosphate ABC transporter (phosphate binding lipoprotein)/transpeptidase (penicillin‑binding protein 2A) |
| RA | BS168_reference_genome | 2,595,353 | T→C | 9.9% | T50A (ACG→GCG) | cshB ← | ATP‑dependent RNA helicase; cold shock |
| RA | BS168_reference_genome | 2,749,256 | A→T | 6.5% | intergenic (‑439/‑4) | csn ← / → yraL | chitosanase/conserved protein of unknown function |
| RA | BS168_reference_genome | 2,758,999 | A→G | 9.7% | S360P (TCT→CCT) | sacC ← | levanase |
| RA | BS168_reference_genome | 2,839,474 | C→A | 29.2% | K133N (AAG→AAT) | yrbE ← | putative inositol‑related oxidoreductase |
| RA | BS168_reference_genome | 2,912,810 | T→G | 15.4% | T27P (ACT→CCT) | uvrC ← | excinuclease ABC (subunit C) |
| RA | BS168_reference_genome | 2,987,550 | T→C | 7.1% | intergenic (‑3/+181) | pfkA ← / ← accA | 6‑phosphofructokinase/acetyl‑CoA carboxylase (carboxyltransferase alpha subunit) |
| RA | BS168_reference_genome | 3,021,860 | C→A | 8.2% | L210M (CTG→ATG) | ppnKB → | inorganic polyphosphate/ATP‑NAD kinase |
| RA | BS168_reference_genome | 3,036,709 | C→T | 6.3% | R388H (CGC→CAC) | tyrS ← | tyrosyl‑tRNA synthetase |
| RA | BS168_reference_genome | 3,096,417 | C→T | 8.9% | A50T (GCG→ACG) | ytaP ← | putative hydrolase |
| RA | BS168_reference_genome | 3,141,615 | A→G | 6.4% | A270A (GCA→GCG) | ythB → | putative cytochrome bd menaquinol oxidase subunit II |
| RA | BS168_reference_genome | 3,197,776 | A→T | 6.5% | K291* (AAA→TAA) | iolU → | scyllo‑inositol dehydrogenase (NADP+‑dependent); biofilm formation |
| RA | BS168_reference_genome | 3,290,481 | C→T | 5.5% | M335I (ATG→ATA) | dhbC ← | isochorismate synthase (siderophore‑specific) |
| RA | BS168_reference_genome | 3,392,796 | G→T | 32.7% | G200* (GGA→TGA) | gerAB → | component of the germination receptor GerA; putative transporter |
| RA | BS168_reference_genome | 3,496,398 | C→T | 9.9% | M27I (ATG→ATA) | yvfU ← | two‑component response regulator [YvfT] |
| RA | BS168_reference_genome | 3,695,698 | C→T | 6.7% | D112D (GAC→GAT) | ribZB → | 5‑amino‑6‑ribitylamino‑2,4(1H, 3H)‑pyrimidinedione 5'‑phosphate phosphatase (promiscuous activity) |
| RA | BS168_reference_genome | 3,701,226 | T→A | 11.4% | intergenic (‑599/‑185) | capB ← / → rbsR | capsular polyglutamate synthetase (ATP‑dependent amide ligase)/ribose operon repressor (LacI family, D‑ribose) |
| RA | BS168_reference_genome | 3,770,058:1 | +A | 100% | intergenic (‑250/+46) | ywzF ← / ← csbD | conserved protein of unknown function/stress response protein |
| RA | BS168_reference_genome | 3,920,358 | G→A | 7.7% | P93S (CCT→TCT) | galT ← | galactose‑1‑phosphate uridyltransferase |
| RA | BS168_reference_genome | 3,935,823 | Δ1 bp | 100% | intergenic (+35/+1) | ywbE → / ← rlmI | conserved protein of unknown function/large subunit ribosomal RNA m5C1962 methyltransferase |
| RA | BS168_reference_genome | 4,010,739 | A→T | 6.6% | G112G (GGA→GGT) | citH → | secondary transporter of divalent metal ions/citrate complexes |
| RA | BS168_reference_genome | 4,048,670 | T→G | 20.0% | V378G (GTC→GGC) | hutM → | histidine degradation metabolites permease |
| RA | BS168_reference_genome | 4,073,940 | G→T | 6.5% | S5* (TCG→TAG) | iolJ ← | 2‑deoxy‑5‑keto‑D‑gluconic acid 6‑phosphate aldolase |
| RA | BS168_reference_genome | 4,076,868 | T→G | 6.7% | K431Q (AAA→CAA) | iolF ← | inositol transport protein |
| RA | BS168_reference_genome | 4,077,654 | T→C | 6.9% | N169D (AAT→GAT) | iolF ← | inositol transport protein |
| RA | BS168_reference_genome | 4,087,669 | C→T | 6.3% | H72Y (CAC→TAC) | yxcD → | conserved protein of unknown function |
| RA | BS168_reference_genome | 4,087,723 | G→C | 14.2% | G90R (GGC→CGC) | yxcD → | conserved protein of unknown function |
| RA | BS168_reference_genome | 4,102,595 | G→A | 5.3% | T356M (ACG→ATG) | yxaL ← | membrane associated protein kinase with beta‑propeller domain |
| RA | BS168_reference_genome | 4,137,538 | G→C | 20.6% | H25D (CAT→GAT) | yycQ ← | conserved membrane protein |
| RA | BS168_reference_genome | 4,151,742 | G→A | 7.2% | S41F (TCT→TTT) | walH ← | regulator of WalRK(YycFG) |
| RA | BS168_reference_genome | 4,153,115 | G→T | 100% | L192I (CTT→ATT) | walK ← | two‑component sensor histidine kinase [YycG] |
| RA | BS168_reference_genome | 4,155,390:1 | +A | 100% | intergenic (‑181/+43) | trnY‑Lys ← / ← purA | tRNA‑Lys/adenylosuccinate synthetase |
| RA | BS168_reference_genome | 4,165,884 | G→A | 7.0% | G235G (GGC→GGT) | yybS ← | putative integral inner membrane protein |
| RA | BS168_reference_genome | 4,191,258 | C→T | 8.5% | H21Y (CAC→TAC) | yyaL → | conserved hypothetical protein |
| RA | Exported | 78 | G→T | 5.3% | intergenic (–/‑2900) | – / → eryR | –//vntifkey=4 |
| RA | Exported | 121 | G→C | 5.9% | intergenic (–/‑2857) | – / → eryR | –//vntifkey=4 |
| RA | Exported | 131 | G→C | 7.0% | intergenic (–/‑2847) | – / → eryR | –//vntifkey=4 |
| RA | Exported | 137 | A→C | 6.0% | intergenic (–/‑2841) | – / → eryR | –//vntifkey=4 |
| RA | Exported | 2,206 | C→T | 5.1% | intergenic (–/‑772) | – / → eryR | –//vntifkey=4 |
| RA | Exported | 2,224 | T→C | 15.1% | intergenic (–/‑754) | – / → eryR | –//vntifkey=4 |
| RA | Exported | 2,236 | A→G | 7.5% | intergenic (–/‑742) | – / → eryR | –//vntifkey=4 |
| RA | Exported | 2,239 | A→G | 7.8% | intergenic (–/‑739) | – / → eryR | –//vntifkey=4 |
| JC | Exported | 2,655 | Δ3 bp | 100% | intergenic (–/‑321) | – / → eryR | –//vntifkey=4 |
| RA | Exported | 3,729 | T→G | 6.2% | intergenic (+14/‑142) | eryR → / → ampR | /vntifkey=4//vntifkey=4 |
| RA | Exported | 3,735 | A→T | 9.0% | intergenic (+20/‑136) | eryR → / → ampR | /vntifkey=4//vntifkey=4 |
| RA | Exported | 3,741 | G→T | 9.0% | intergenic (+26/‑130) | eryR → / → ampR | /vntifkey=4//vntifkey=4 |
| JC | Exported | 3,843 | Δ5 bp | 100% | intergenic (+128/‑24) | eryR → / → ampR | /vntifkey=4//vntifkey=4 |
| RA | Exported | 4,625 | A→C | 6.9% | K252T (AAG→ACG) | ampR → | /vntifkey=4 |
| RA | Exported | 4,649 | A→C | 8.4% | Y260S (TAC→TCC) | ampR → | /vntifkey=4 |
| RA | Exported | 5,049 | C→T | 100% | intergenic (+318/‑839) | ampR → / → lacZalpha | /vntifkey=4//vntifkey=4 |
| RA | Exported | 5,173 | T→G | 6.5% | intergenic (+442/‑715) | ampR → / → lacZalpha | /vntifkey=4//vntifkey=4 |
| RA | Exported | 5,302 | A→C | 5.7% | intergenic (+571/‑586) | ampR → / → lacZalpha | /vntifkey=4//vntifkey=4 |
| RA | Exported | 5,464 | T→G | 5.4% | intergenic (+733/‑424) | ampR → / → lacZalpha | /vntifkey=4//vntifkey=4 |
| RA | Exported | 6,006 | T→G | 6.5% | V40G (GTT→GGT) | lacZalpha → | /vntifkey=4 |
| RA | Exported | 6,012 | A→C | 7.4% | Q42P (CAA→CCA) | lacZalpha → | /vntifkey=4 |
| RA | Exported | 6,031 | A→C | 6.7% | A48A (GCA→GCC) | lacZalpha → | /vntifkey=4 |
| RA | Exported | 6,033 | A→C | 5.2% | H49P (CAT→CCT) | lacZalpha → | /vntifkey=4 |
| RA | Exported | 6,047 | A→C | 5.2% | S54R (AGC→CGC) | lacZalpha → | /vntifkey=4 |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | BS168_reference_genome | 160964–161238 | 165598–164903 | 3666–4635 | 12 [10] | [9] 11 | [rrnI‑16S]–[rrnI‑5S] | [rrnI‑16S],rrnI‑23S,[rrnI‑5S] |
| * | * | ÷ | BS168_reference_genome | 166441–166703 | 171220–170393 | 3691–4780 | 11 [9] | [10] 13 | rrnH‑16S–[rrnH‑5S] | rrnH‑16S,rrnH‑23S,[rrnH‑5S] |
| * | * | ÷ | BS168_reference_genome | 171470–171679 | 176232–172978 | 1300–4763 | 13 [5] | [10] 12 | rrnG‑16S–[rrnG‑5S] | rrnG‑16S,rrnG‑23S,[rrnG‑5S] |
| * | * | ÷ | BS168_reference_genome | 1073639 | 1074757 | 1119 | 11 [10] | [10] 11 | [scoC]–[trpP] | [scoC],yhaH,yhzF,[trpP] |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | BS168_reference_genome | = 1073458 | 4 (0.080) | 34 (0.680) | 22/230 | NT | 87.2% | coding (260/612 nt) | scoC | transcriptional regulator of extracellular protease production, sporulation and bacilysin production (MarR family) |
| ? | BS168_reference_genome | 1074991 = | 6 (0.120) | coding (174/519 nt) | trpP | tryptophan transporter or sensor | |||||