mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP006881 | 30,182 | C→T | 100% | intergenic (+147/‑96) | U712_00120 → / → U712_20865 | Sigma‑K factor‑processing regulatory protein BofA/16S ribosomal RNA |
| RA | CP006881 | 53,413 | G→A | 100% | intergenic (+45/‑94) | U712_00230 → / → U712_00235 | Protein sspF/4‑diphosphocytidyl‑2‑C‑methyl‑D‑erythritol kinase |
| RA | CP006881 | 61,829 | C→T | 5.9% | A467V (GCC→GTC) | U712_00285 → | Transcription‑repair‑coupling factor |
| RA | CP006881 | 156,418 | A→G | 5.8% | N105D (AAT→GAT) | U712_00780 → | Uncharacterized protein ybaK |
| RA | CP006881 | 214,982 | C→T | 100% | A268V (GCC→GTC) | U712_00980 → | Uncharacterized protein skfB |
| RA | CP006881 | 238,253 | G→T | 20.2% | F27L (TTC→TTA) | U712_01105 ← | Uncharacterized protein ybfE |
| RA | CP006881 | 249,190 | A→G | 49.0% | H146R (CAT→CGT) | U712_01165 → | Phosphatidylserine decarboxylase proenzyme |
| RA | CP006881 | 454,851 | A→G | 33.3% | Y134Y (TAT→TAC) | U712_02090 ← | Uncharacterized protein YczH |
| RA | CP006881 | 695,557 | C→A | 6.5% | V101F (GTT→TTT) | U712_03390 ← | putative HTH‑type transcriptional regulator yerO |
| RA | CP006881 | 711,855 | A→T | 6.8% | L248Q (CTG→CAG) | U712_03445 ← | Uncharacterized protein yezG |
| RA | CP006881 | 772,802 | T→C | 7.8% | L71P (CTT→CCT) | U712_03730 → | putative ABC transporter ATP‑binding protein YfmR |
| RA | CP006881 | 891,083 | C→G | 5.6% | S388R (AGC→AGG) | U712_04340 → | putative MFS‑type transporter yfhI |
| RA | CP006881 | 895,672 | T→G | 20.2% | F254V (TTT→GTT) | U712_04380 → | Uncharacterized protein yfhO |
| RA | CP006881 | 924,066:1 | +A | 100% | intergenic (‑46/‑233) | U712_04490 ← / → U712_04495 | Vegetative catalase/Aliphatic sulfonates import ATP‑binding protein SsuB |
| RA | CP006881 | 986,184 | C→A | 25.4% | intergenic (+50/‑200) | U712_04810 → / → U712_04815 | putative oxidoreductase yhdF/putative amino acid permease YhdG |
| RA | CP006881 | 986,225 | C→A | 34.2% | intergenic (+91/‑159) | U712_04810 → / → U712_04815 | putative oxidoreductase yhdF/putative amino acid permease YhdG |
| RA | CP006881 | 1,091,483:1 | +T | 100% | coding (1163/1326 nt) | U712_05390 ← | NTD biosynthesis operon protein ntdA |
| RA | CP006881 | 1,497,143 | A→T | 9.2% | intergenic (‑404/‑15) | U712_07685 ← / → U712_07690 | Pal‑related lipoprotein/Uncharacterized protein ykzW |
| RA | CP006881 | 1,538,461 | T→C | 7.8% | S54P (TCG→CCG) | U712_07945 → | Uncharacterized protein ylbN |
| RA | CP006881 | 1,603,312 | C→A | 9.1% | S770S (TCC→TCA) | U712_08240 → | Calcium‑transporting ATPase |
| RA | CP006881 | 1,617,018 | A→T | 6.7% | D293V (GAC→GTC) | U712_08305 → | Putative ribosome biogenesis GTPase RsgA |
| RA | CP006881 | 1,634,454 | T→G | 14.3% | N79T (AAC→ACC) | U712_08390 ← | Uncharacterized protein ylqB |
| RA | CP006881 | 1,653,890 | T→C | 100% | L245P (CTA→CCA) | U712_08495 → | GTP‑sensing transcriptional pleiotropic repressor CodY |
| MC JC | CP006881 | 1,659,332 | Δ141 bp | 100% | coding (418‑558/1317 nt) | U712_08530 → | Flagellum‑specific ATP synthase |
| RA | CP006881 | 1,701,244 | G→A | 7.7% | A125T (GCA→ACA) | U712_08750 → | Riboflavin biosynthesis protein ribC |
| RA | CP006881 | 1,804,957 | C→T | 5.0% | pseudogene (7590/16546 nt) | U712_09020 → | frameshift (+1) in homopolymer run at nucleotide position 6839 in gene |
| RA | CP006881 | 1,858,374 | Δ1 bp | 6.2% | intergenic (+171/+42) | U712_09250 → / ← U712_09255 | Hypothetical Protein/Endonuclease yncB |
| RA | CP006881 | 1,884,220 | T→C | 7.4% | L441P (CTG→CCG) | U712_09415 → | Transketolase |
| RA | CP006881 | 1,901,324 | C→A | 8.9% | E45* (GAG→TAG) | U712_09535 ← | Uncharacterized protein ynfC |
| RA | CP006881 | 1,965,296 | T→C | 5.9% | Q531R (CAG→CGG) | U712_09710 ← | Glutamate synthase [NADPH] large chain |
| RA | CP006881 | 1,965,760 | G→T | 10.8% | V376V (GTC→GTA) | U712_09710 ← | Glutamate synthase [NADPH] large chain |
| RA | CP006881 | 2,042,939 | T→A | 8.9% | F37L (TTT→TTA) | U712_10110 → | Sensor histidine kinase desK |
| RA | CP006881 | 2,148,220 | A→G | 10.0% | V289A (GTC→GCC) | U712_10730 ← | Putative RNA methyltransferase YpsC |
| RA | CP006881 | 2,199,507 | C→A | 7.4% | G54G (GGG→GGT) | U712_11020 ← | Nucleoside diphosphate kinase |
| RA | CP006881 | 2,222,617 | C→T | 7.3% | E94K (GAA→AAA) | U712_11155 ← | Uncharacterized protein ypbG |
| RA | CP006881 | 2,228,900 | G→A | 31.2% | intergenic (‑152/‑54) | U712_11195 ← / → U712_11200 | Uncharacterized protein ypzE/D‑3‑phosphoglycerate dehydrogenase |
| RA | CP006881 | 2,228,902 | A→G | 31.3% | intergenic (‑154/‑52) | U712_11195 ← / → U712_11200 | Uncharacterized protein ypzE/D‑3‑phosphoglycerate dehydrogenase |
| RA | CP006881 | 2,228,904 | A→G | 31.3% | intergenic (‑156/‑50) | U712_11195 ← / → U712_11200 | Uncharacterized protein ypzE/D‑3‑phosphoglycerate dehydrogenase |
| RA | CP006881 | 2,289,100 | G→T | 100% | P184T (CCG→ACG) | U712_11585 ← | putative oxidoreductase yqjQ |
| RA | CP006881 | 2,301,541 | T→C | 6.1% | I28I (ATT→ATC) | U712_11635 → | Uncharacterized protein yqzJ |
| RA | CP006881 | 2,304,097 | T→G | 27.4% | T189P (ACC→CCC) | U712_11650 ← | Uncharacterized protein yqjE |
| RA | CP006881 | 2,646,209 | C→A | 7.5% | Q253H (CAG→CAT) | U712_13610 ← | Protein translocase subunit SecDF |
| RA | CP006881 | 2,743,320 | G→C | 5.5% | P56P (CCC→CCG) | U712_14140 ← | putative transmembrane protein yshB |
| RA | CP006881 | 2,801,996 | G→A | 100% | A327T (GCC→ACC) | U712_14440 → | UPF0118 membrane protein ytvI |
| RA | CP006881 | 2,846,416 | T→G | 23.0% | L89R (CTT→CGT) | U712_14690 → | Branched‑chain amino acid transport system carrier protein BraB |
| RA | CP006881 | 2,863,954 | G→T | 9.5% | A144E (GCG→GAG) | U712_14775 ← | Protein AroA(G) |
| RA | CP006881 | 2,866,689 | G→A | 7.5% | A214V (GCG→GTG) | U712_14795 ← | UDP‑N‑acetylmuramate‑‑L‑alanine ligase |
| RA | CP006881 | 2,896,953 | T→C | 70.7% | K72E (AAG→GAG) | U712_14940 ← | Uncharacterized protein yteU |
| RA | CP006881 | 2,927,663 | A→G | 6.1% | H510H (CAT→CAC) | U712_15080 ← | Bacitracin export permease protein BceB |
| RA | CP006881 | 2,951,010 | C→T | 6.0% | A262A (GCC→GCT) | U712_15195 → | Hypothetical Protein |
| RA | CP006881 | 2,963,941 | A→G | 100% | intergenic (‑128/+152) | U712_15285 ← / ← U712_15290 | Manganese‑binding lipoprotein mntA/o‑succinylbenzoate synthase |
| RA | CP006881 | 2,969,679 | T→G | 9.6% | K161T (AAG→ACG) | U712_15310 ← | 2‑succinyl‑5‑enolpyruvyl‑6‑hydroxy‑3‑ cyclohexene‑1‑carboxylate synthase |
| RA | CP006881 | 3,010,076 | A→G | 30.8% | L386P (CTG→CCG) | U712_15465 ← | putative MFS‑type transporter yubD |
| RA | CP006881 | 3,112,607 | A→G | 5.5% | I162V (ATT→GTT) | U712_15960 → | Putative biotin transporter BioYB |
| RA | CP006881 | 3,143,371 | C→T | 5.4% | R128Q (CGG→CAG) | U712_16145 ← | UPF0721 transmembrane protein yunE |
| RA | CP006881 | 3,186,737 | T→A | 28.7% | I378F (ATC→TTC) | U712_16400 ← | 3‑ketoacyl‑CoA thiolase |
| RA | CP006881 | 3,204,165 | T→G | 24.8% | V196V (GTT→GTG) | U712_16490 → | Transcriptional regulatory protein CssR |
| RA | CP006881 | 3,285,257:1 | +T | 100% | intergenic (‑77/+143) | U712_16905 ← / ← U712_16910 | Transcriptional repressor sdpR/Glycine betaine/carnitine/choline transport system permease protein opuCD |
| RA | CP006881 | 3,476,688 | G→T | 39.8% | S20Y (TCT→TAT) | U712_17855 ← | putative undecaprenyl‑phosphate galactose phosphotransferase‑like Protein |
| RA | CP006881 | 3,480,475 | T→A | 6.9% | T49S (ACA→TCA) | U712_17865 ← | Amidase enhancer |
| RA | CP006881 | 3,515,586 | G→T | 16.5% | F25L (TTC→TTA) | U712_18010 ← | Uncharacterized protein ywtC |
| RA | CP006881 | 3,578,466 | Δ1 bp | 100% | intergenic (‑59/‑76) | U712_18365 ← / → U712_18370 | Stage II sporulation protein Q/Putative phosphinothricin acetyltransferase YwnH |
| RA | CP006881 | 3,579,785 | Δ1 bp | 100% | coding (73/132 nt) | U712_18380 → | Hypothetical Protein |
| RA | CP006881 | 3,617,913 | A→T | 5.9% | Y93* (TAT→TAA) | U712_18650 ← | putative transporter YwkB |
| RA | CP006881 | 3,619,945 | T→C | 8.1% | E9G (GAA→GGA) | U712_18655 ← | putative NAD‑dependent malic enzyme 2 |
| RA | CP006881 | 3,621,173 | A→T | 10.7% | intergenic (‑37/+82) | U712_18670 ← / ← U712_18675 | 50S ribosomal protein L31/Transcription termination factor Rho |
| RA | CP006881 | 3,676,717 | T→A | 6.3% | Q9L (CAG→CTG) | U712_18940 ← | Putative HTH‑type transcriptional regulator ywgB |
| RA | CP006881 | 3,684,461 | A→G | 5.8% | Q4R (CAG→CGG) | U712_18985 → | Hypothetical Protein |
| RA | CP006881 | 3,723,022 | G→A | 100% | intergenic (‑136/‑165) | U712_19190 ← / → U712_19195 | PTS system sucrose‑specific EIIBC component/putative transporter ywcJ |
| RA | CP006881 | 3,723,045 | T→C | 100% | intergenic (‑159/‑142) | U712_19190 ← / → U712_19195 | PTS system sucrose‑specific EIIBC component/putative transporter ywcJ |
| RA | CP006881 | 3,723,067 | 1 bp→AT | 100% | intergenic (‑181/‑120) | U712_19190 ← / → U712_19195 | PTS system sucrose‑specific EIIBC component/putative transporter ywcJ |
| RA | CP006881 | 3,723,091 | A→T | 100% | intergenic (‑205/‑96) | U712_19190 ← / → U712_19195 | PTS system sucrose‑specific EIIBC component/putative transporter ywcJ |
| RA | CP006881 | 3,723,095 | T→A | 100% | intergenic (‑209/‑92) | U712_19190 ← / → U712_19195 | PTS system sucrose‑specific EIIBC component/putative transporter ywcJ |
| RA | CP006881 | 3,723,097 | T→G | 100% | intergenic (‑211/‑90) | U712_19190 ← / → U712_19195 | PTS system sucrose‑specific EIIBC component/putative transporter ywcJ |
| RA | CP006881 | 3,723,118 | C→T | 100% | intergenic (‑232/‑69) | U712_19190 ← / → U712_19195 | PTS system sucrose‑specific EIIBC component/putative transporter ywcJ |
| RA | CP006881 | 3,723,121 | T→A | 100% | intergenic (‑235/‑66) | U712_19190 ← / → U712_19195 | PTS system sucrose‑specific EIIBC component/putative transporter ywcJ |
| RA | CP006881 | 3,723,130 | A→T | 100% | intergenic (‑244/‑57) | U712_19190 ← / → U712_19195 | PTS system sucrose‑specific EIIBC component/putative transporter ywcJ |
| RA | CP006881 | 3,723,162 | C→T | 100% | intergenic (‑276/‑25) | U712_19190 ← / → U712_19195 | PTS system sucrose‑specific EIIBC component/putative transporter ywcJ |
| RA | CP006881 | 3,723,166 | C→G | 100% | intergenic (‑280/‑21) | U712_19190 ← / → U712_19195 | PTS system sucrose‑specific EIIBC component/putative transporter ywcJ |
| RA | CP006881 | 3,723,183 | A→G | 100% | intergenic (‑297/‑4) | U712_19190 ← / → U712_19195 | PTS system sucrose‑specific EIIBC component/putative transporter ywcJ |
| RA | CP006881 | 3,723,204 | G→A | 100% | L6L (TTG→TTA) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,210 | A→G | 100% | K8K (AAA→AAG) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,222 | C→T | 100% | Y12Y (TAC→TAT) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,231 | C→A | 100% | N15K (AAC→AAA) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,236 | T→A | 100% | L17Q (CTA→CAA) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,246 | T→C | 100% | F20F (TTT→TTC) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,248 | T→C | 100% | V21A (GTT→GCT) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,252 | T→A | 100% | S22S (TCT→TCA) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,273 | 2 bp→TC | 100% | coding (87‑88/771 nt) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,276 | A→G | 100% | R30R (AGA→CGG) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,291 | C→T | 100% | S35S (AGC→AGT) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,294 | G→A | 100% | M36I (ATG→ATA) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,300 | C→T | 100% | I38I (ATC→ATT) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,303 | A→T | 100% | G39G (GGA→GGT) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,306 | C→T | 100% | F40F (TTC→TTT) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,336 | T→C | 100% | S50S (AGT→AGC) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,344 | C→T | 100% | S53F (TCT→TTT) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,351 | G→T | 100% | A55A (GCG→GCT) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,366 | T→C | 100% | A60A (GCT→GCC) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,387 | A→T | 100% | T67T (ACA→ACT) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,406 | C→A | 100% | L74M (CTG→ATG) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,438 | T→C | 100% | T84T (ACT→ACC) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,447 | T→C | 100% | T87T (ACT→ACC) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,459 | T→C | 100% | T91T (ACT→ACC) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,474 | A→G | 100% | R96R (CGA→CGG) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,483 | 2 bp→CA | 100% | coding (297‑298/771 nt) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,492 | A→C | 100% | R102R (CGA→CGC) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,501 | G→A | 100% | L105L (CTG→CTA) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,505 | C→T | 100% | L107L (CTG→TTG) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,534 | G→A | 100% | L116L (TTG→TTA) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,549 | A→G | 100% | L121L (CTA→CTG) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,558 | T→C | 100% | I124I (ATT→ATC) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,573 | A→G | 100% | T129T (ACA→ACG) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,576 | G→A | 100% | G130G (GGG→GGA) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,589 | G→C | 100% | A135P (GCT→CCT) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,616 | C→T | 100% | L144L (CTG→TTG) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,642 | C→G | 100% | P152P (CCC→CCG) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,652 | C→T | 100% | L156L (CTG→TTG) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,666 | G→A | 100% | G160G (GGG→GGA) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,717 | T→C | 100% | L177L (CTT→CTC) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,729 | G→A | 100% | G181G (GGG→GGA) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,738 | C→T | 100% | L184L (CTC→CTT) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,771 | C→T | 100% | F195F (TTC→TTT) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,783 | C→T | 100% | F199F (TTC→TTT) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,822 | A→G | 100% | S212S (TCA→TCG) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,853 | G→C | 100% | V223M (GTA→CTG) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,855 | A→G | 100% | V223M (GTA→CTG) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,879 | T→C | 100% | I231I (ATT→ATC) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,888 | A→G | 100% | T234T (ACA→ACG) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,897 | C→T | 100% | N237N (AAC→AAT) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,912 | G→A | 100% | M242I (ATG→ATA) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,915 | C→T | 100% | V243V (GTC→GTT) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,933 | T→C | 100% | Y249Y (TAT→TAC) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,939 | G→A | 100% | T251T (ACG→ACA) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,942 | C→G | 100% | L252L (CTC→CTG) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,948 | C→T | 100% | P254P (CCC→CCT) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,952 | A→C | 100% | K256Q (AAA→CAA) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,724,053 | C→T | 100% | E258E (GAG→GAA) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,078 | C→T | 100% | S250N (AGT→AAT) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,092 | T→C | 100% | A245A (GCA→GCG) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,101 | A→C | 100% | L242L (CTT→CTG) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,119 | A→G | 100% | F236F (TTT→TTC) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,194 | A→G | 100% | S211S (AGT→AGC) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,200 | T→C | 100% | A209A (GCA→GCG) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,208 | T→G | 100% | R207R (AGA→CGA) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,274 | C→T | 100% | E185K (GAA→AAA) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,392 | A→C | 100% | L145L (CTT→CTG) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,446 | G→A | 100% | Y127Y (TAC→TAT) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,467 | T→C | 100% | K120K (AAA→AAG) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,542 | A→G | 100% | S95S (TCT→TCC) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,587 | C→T | 100% | G80G (GGG→GGA) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,623 | A→T | 100% | I68I (ATT→ATA) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,659 | A→G | 100% | F56F (TTT→TTC) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,678 | T→C | 100% | H50R (CAC→CGC) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,719 | G→A | 100% | D36D (GAC→GAT) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,749 | T→C | 100% | P26P (CCA→CCG) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,808 | G→A | 100% | L7L (CTA→TTA) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,831 | C→T | 100% | intergenic (‑5/+35) | U712_19200 ← / ← U712_19205 | SacPA operon antiterminator/Uncharacterized protein ywcI |
| RA | CP006881 | 3,724,849 | A→T | 100% | intergenic (‑23/+17) | U712_19200 ← / ← U712_19205 | SacPA operon antiterminator/Uncharacterized protein ywcI |
| RA | CP006881 | 3,724,902 | A→C | 100% | A89A (GCT→GCG) | U712_19205 ← | Uncharacterized protein ywcI |
| RA | CP006881 | 3,724,977 | T→C | 100% | Q64Q (CAA→CAG) | U712_19205 ← | Uncharacterized protein ywcI |
| RA | CP006881 | 3,724,980 | T→C | 100% | K63K (AAA→AAG) | U712_19205 ← | Uncharacterized protein ywcI |
| RA | CP006881 | 3,725,010 | C→T | 100% | E53E (GAG→GAA) | U712_19205 ← | Uncharacterized protein ywcI |
| RA | CP006881 | 3,725,025 | A→G | 100% | L48L (CTT→CTC) | U712_19205 ← | Uncharacterized protein ywcI |
| RA | CP006881 | 3,725,031 | C→T | 100% | A46A (GCG→GCA) | U712_19205 ← | Uncharacterized protein ywcI |
| RA | CP006881 | 3,725,043 | C→A | 100% | A42A (GCG→GCT) | U712_19205 ← | Uncharacterized protein ywcI |
| RA | CP006881 | 3,725,049 | T→C | 100% | K40K (AAA→AAG) | U712_19205 ← | Uncharacterized protein ywcI |
| RA | CP006881 | 3,725,082 | A→C | 100% | A29A (GCT→GCG) | U712_19205 ← | Uncharacterized protein ywcI |
| RA | CP006881 | 3,725,205:1 | +T | 100% | intergenic (‑37/‑492) | U712_19205 ← / → U712_19210 | Uncharacterized protein ywcI/Minor extracellular protease vpr |
| RA | CP006881 | 3,725,237 | A→G | 100% | intergenic (‑69/‑460) | U712_19205 ← / → U712_19210 | Uncharacterized protein ywcI/Minor extracellular protease vpr |
| RA | CP006881 | 3,725,239 | 2 bp→AA | 100% | intergenic (‑71/‑457) | U712_19205 ← / → U712_19210 | Uncharacterized protein ywcI/Minor extracellular protease vpr |
| RA | CP006881 | 3,733,697 | C→T | 5.3% | M475I (ATG→ATA) | U712_19250 ← | Quinol oxidase subunit 1 |
| RA | CP006881 | 3,749,284 | T→C | 5.1% | T254A (ACT→GCT) | U712_19325 ← | Hydroxyethylthiazole kinase |
| RA | CP006881 | 3,765,463 | Δ1 bp | 7.1% | coding (454/1242 nt) | U712_19410 → | Tyrosyl‑tRNA synthetase 2 |
| RA | CP006881 | 3,775,812 | A→G | 5.6% | K190K (AAA→AAG) | U712_19475 → | Branched‑chain‑amino‑acid aminotransferase 2 |
| RA | CP006881 | 3,831,557 | G→A | 100% | intergenic (‑6/+90) | U712_19755 ← / ← U712_19760 | Transcription antiterminator LicT/Uncharacterized protein yxiP |
| RA | CP006881 | 3,905,575 | G→C | 15.1% | G90R (GGC→CGC) | U712_20135 → | Uncharacterized protein yxcD |
| RA | CP006881 | 3,928,915 | A→T | 8.0% | D306E (GAT→GAA) | U712_20255 ← | General stress protein 30 |
| RA | CP006881 | 3,950,624 | C→T | 7.1% | C468Y (TGT→TAT) | U712_20355 ← | putative metallophosphoesterase‑like protein yydB |
| RA | CP006881 | 3,986,011 | T→A | 6.9% | intergenic (‑159/‑46) | U712_20550 ← / → U712_20555 | putative HTH‑type transcriptional regulator yybR/putative manganese‑dependent inorganic pyrophosphatase |
| RA | pSIJ663_pHT315_araE_xy | 131 | G→C | 6.1% | intergenic (–/‑2847) | – / → eryR | –/– |
| RA | pSIJ663_pHT315_araE_xy | 137 | A→C | 5.0% | intergenic (–/‑2841) | – / → eryR | –/– |
| RA | pSIJ663_pHT315_araE_xy | 2,179 | Δ1 bp | 100% | intergenic (–/‑799) | – / → eryR | –/– |
| JC | pSIJ663_pHT315_araE_xy | 2,655 | Δ3 bp | 100% | intergenic (–/‑321) | – / → eryR | –/– |
| RA | pSIJ663_pHT315_araE_xy | 3,729 | T→G | 6.6% | intergenic (+14/‑142) | eryR → / → ampR | –/– |
| RA | pSIJ663_pHT315_araE_xy | 3,735 | A→T | 9.7% | intergenic (+20/‑136) | eryR → / → ampR | –/– |
| RA | pSIJ663_pHT315_araE_xy | 3,741 | G→T | 9.3% | intergenic (+26/‑130) | eryR → / → ampR | –/– |
| RA | pSIJ663_pHT315_araE_xy | 3,749 | A→T | 5.4% | intergenic (+34/‑122) | eryR → / → ampR | –/– |
| RA | pSIJ663_pHT315_araE_xy | 3,783 | G→T | 5.0% | intergenic (+68/‑88) | eryR → / → ampR | –/– |
| JC | pSIJ663_pHT315_araE_xy | 3,843 | Δ5 bp | 100% | intergenic (+128/‑24) | eryR → / → ampR | –/– |
| RA | pSIJ663_pHT315_araE_xy | 4,625 | A→C | 6.5% | K252T (AAG→ACG) | ampR → | |
| RA | pSIJ663_pHT315_araE_xy | 4,648 | T→A | 10.5% | Y260N (TAC→AAC) ‡ | ampR → | |
| RA | pSIJ663_pHT315_araE_xy | 4,649 | A→C | 9.0% | Y260S (TAC→TCC) ‡ | ampR → | |
| RA | pSIJ663_pHT315_araE_xy | 5,049 | C→T | 100% | intergenic (+318/–) | ampR → / – | –/– |
| RA | pSIJ663_pHT315_araE_xy | 5,173 | T→G | 6.1% | intergenic (+442/–) | ampR → / – | –/– |
| RA | pSIJ663_pHT315_araE_xy | 5,302 | A→C | 5.3% | intergenic (+571/–) | ampR → / – | –/– |
| RA | pSIJ663_pHT315_araE_xy | 5,464 | T→G | 5.9% | intergenic (+733/–) | ampR → / – | –/– |
| RA | pSIJ663_pHT315_araE_xy | 5,467 | T→G | 6.5% | intergenic (+736/–) | ampR → / – | –/– |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | CP006881 | 245177 | 246106 | 930 | 12 [9] | [10] 14 | [U712_01140]–[U712_01145] | [U712_01140],[U712_01145] |
| * | * | ÷ | CP006881 | 579378 | 579446 | 69 | 12 [10] | [8] 11 | U712_02850 | putative HTH‑type transcriptional regulator ydhC |
| * | * | ÷ | CP006881 | 1067445 | 1068624 | 1180 | 11 [9] | [10] 11 | U712_05250 | U712_05250 |
| * | * | ÷ | CP006881 | 1149041 | 1150715 | 1675 | 12 [10] | [8] 11 | U712_05685 | U712_05685 |
| * | * | ÷ | CP006881 | 1503056 | 1504637 | 1582 | 11 [10] | [10] 11 | [U712_07740] | [U712_07740] |
| * | * | ÷ | CP006881 | 1562246 | 1566631 | 4386 | 11 [10] | [10] 11 | U712_08060 | U712_08060 |
| * | * | ÷ | CP006881 | 3303205–3303322 | 3304615 | 1294–1411 | 11 [10] | [0] 15 | [U712_16990]–U712_16995 | [U712_16990],U712_16995 |
| * | * | ÷ | CP006881 | 3725700 | 3728135 | 2436 | 15 [0] | [8] 13 | [U712_19210] | [U712_19210] |
| * | * | ÷ | CP006881 | 3757687 | 3759655 | 1969 | 13 [10] | [6] 13 | [U712_19375] | [U712_19375] |
| * | * | ÷ | pSIJ663_pHT315_araE_xy | 5552 | 11201 | 5650 | 5563 [42] | [3342] 3390 | ampR/– | –/– |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP006881 | 9457 = | 75 (1.480) | 1693 (35.240) | 5/220 | NT | 96.1% | coding (2464/2466 nt) | U712_00040 | DNA gyrase subunit A |
| ? | CP006881 | 3301929 = | 67 (1.390) | coding (1392/1395 nt) | U712_16990 | Arabinose‑proton symporter | |||||
| * | ? | CP006881 | 2228866 = | 51 (1.010) | 13 (0.260) | 6/226 | NT | 34.4% | intergenic (‑118/‑88) | U712_11195/U712_11200 | Uncharacterized protein ypzE/D‑3‑phosphoglycerate dehydrogenase |
| ? | CP006881 | 3304616 = | 0 (0.000) | intergenic (+4/+45) | U712_16995/U712_17000 | Arabinose metabolism transcriptional repressor/Uncharacterized protein yvbT | |||||
| * | ? | CP006881 | = 2228918 | 41 (0.810) | 27 (0.010) | 14/232 | NT | 39.7% | intergenic (‑170/‑36) | U712_11195/U712_11200 | Uncharacterized protein ypzE/D‑3‑phosphoglycerate dehydrogenase |
| ? | pSIJ663_pHT315_araE_xy | 9781 = | NA (NA) | intergenic (+5050/–) | ampR/– | –/– | |||||
| * | ? | CP006881 | = 3617989 | 39 (0.770) | 24 (0.470) | 17/232 | NT | 37.2% | coding (203/960 nt) | U712_18650 | putative transporter YwkB |
| ? | CP006881 | 3618570 = | 42 (0.830) | coding (1401/1698 nt) | U712_18655 | putative NAD‑dependent malic enzyme 2 | |||||
| * | ? | pSIJ663_pHT315_araE_xy | = 5551 | 12 (0.000) | 4786 (1.040) | 190/222 | NT | 99.8% | intergenic (+820/–) | ampR/– | –/– |
| ? | pSIJ663_pHT315_araE_xy | 9889 = | NA (NA) | intergenic (+5158/–) | ampR/– | –/– | |||||