mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 521 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP043523 | 1,861,909 | 0 | G | C | 73.3% | 3990.5 / inf | 2152 | intergenic (‑10/+22) | FTN78_chr1909/FTN78_chr1910 | Mobile element protein/hypothetical protein |
| * | CP043523 | 1,895,066 | 0 | T | A | 73.1% | 1335.0 / inf | 1236 | A62A (GCT→GCA) | FTN78_chr1944 | Mobile element protein |
| * | CP043523 | 1,861,227 | 0 | G | T | 72.3% | 1557.7 / inf | 1043 | P225T (CCA→ACA) | FTN78_chr1909 | Mobile element protein |
| * | CP043523 | 1,895,400 | 0 | A | C | 68.5% | 298.5 / inf | 416 | S174R (AGT→CGT) | FTN78_chr1944 | Mobile element protein |
| * | CP043523 | 1,862,066 | 0 | G | A | 64.9% | 9.9 / 32.1 | 37 | L38L (CTC→CTT) | FTN78_chr1910 | hypothetical protein |
| * | CP043523 | 1,883,826 | 0 | C | A | 63.7% | 990.2 / inf | 1137 | Q26K (CAA→AAA) | FTN78_chr1929 | Transposase TnpA |
| * | CP043523 | 1,894,994 | 0 | C | T | 63.5% | 780.6 / inf | 1767 | L38L (CTC→CTT) | FTN78_chr1944 | Mobile element protein |
| * | CP043523 | 1,895,003 | 0 | A | T | 63.1% | 759.6 / inf | 1840 | S41S (TCA→TCT) | FTN78_chr1944 | Mobile element protein |
| * | CP043523 | 1,895,006 | 0 | T | C | 62.6% | 765.2 / inf | 1851 | D42D (GAT→GAC) | FTN78_chr1944 | Mobile element protein |
| * | CP043523 | 1,895,009 | 0 | C | T | 62.2% | 698.8 / inf | 1863 | C43C (TGC→TGT) | FTN78_chr1944 | Mobile element protein |
| * | CP043523 | 248,615 | 0 | T | C | 58.5% | 776.2 / inf | 941 | intergenic (‑191/‑349) | FTN78_chr0306/FTN78_chr0307 | Mobile element protein/Type I restriction‑modification system, restriction subunit R |
| * | CP043523 | 1,885,817 | 0 | A | C | 58.1% | 57.3 / inf | 266 | M15L (ATG→CTG) | FTN78_chr1931 | hypothetical protein |
| * | CP043523 | 1,885,819 | 0 | G | . | 57.9% | 28.2 / inf | 266 | coding (45/351 nt) | FTN78_chr1931 | hypothetical protein |
| * | CP043523 | 1,885,815 | 1 | . | T | 57.5% | 272.7 / inf | 266 | coding (41/351 nt) | FTN78_chr1931 | hypothetical protein |
| * | CP043523 | 1,882,647 | 0 | C | A | 56.9% | 15.2 / inf | 459 | intergenic (+358/‑197) | FTN78_chr1926/FTN78_chr1927 | hypothetical protein/3‑ketoacyl‑CoA thiolase, Acetyl‑CoA acetyltransferase |
| * | CP043523 | 1,319,042 | 0 | A | G | 56.2% | 446.6 / inf | 853 | V318A (GTT→GCT) | FTN78_chr1341 | Competence protein CoiA |
| * | CP043523 | 2,059,908 | 0 | G | A | 55.7% | 280.9 / inf | 1062 | Y351Y (TAC→TAT) | FTN78_chr2133 | D‑alanyl‑D‑alanine carboxypeptidase |
| * | CP043523 | 1,882,574 | 0 | A | G | 55.4% | 155.2 / inf | 517 | intergenic (+285/‑270) | FTN78_chr1926/FTN78_chr1927 | hypothetical protein/3‑ketoacyl‑CoA thiolase, Acetyl‑CoA acetyltransferase |
| * | CP043523 | 1,319,062 | 0 | G | T | 55.4% | 185.4 / inf | 837 | V311V (GTC→GTA) | FTN78_chr1341 | Competence protein CoiA |
| * | CP043523 | 480,860 | 0 | C | T | 55.2% | 249.2 / inf | 1012 | L217L (TTG→TTA) | FTN78_chr0521 | Lead, cadmium, zinc and mercury transporting ATPase |
| Marginal new junction evidence (lowest skew 10 of 63 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP043523 | 1861507 = | 4018 (7.560) | 378 (0.990) +41 bp |
162/212 | 0.2 | 11.6% | coding (393/681 nt) | FTN78_chr1909 | Mobile element protein |
| ? | CP043523 | 1911139 = | NA (NA) | intergenic (‑247/‑58) | FTN78_chr1956/FTN78_chr1957 | UPF0297 protein YrzL/Transposase | |||||
| * | ? | CP043523 | = 1441041 | 568 (1.090) | 336 (0.650) +CTTG |
160/280 | 4.1 | 37.4% | intergenic (‑29/+76) | FTN78_chr1454/FTN78_chr1455 | Oligopeptide ABC transporter, periplasmic oligopeptide‑binding protein OppA/Oligopeptide transport system permease protein OppC |
| ? | CP043523 | 1441042 = | 579 (1.090) | intergenic (‑30/+75) | FTN78_chr1454/FTN78_chr1455 | Oligopeptide ABC transporter, periplasmic oligopeptide‑binding protein OppA/Oligopeptide transport system permease protein OppC | |||||
| * | ? | CP043523 | 1861168 = | 209 (0.390) | 343 (0.660) +CCC |
155/288 | 5.3 | 62.6% | coding (322/360 nt) | FTN78_chr1908 | neutral endopeptidase |
| ? | CP043523 | 1959013 = | NA (NA) | coding (493/840 nt) | FTN78_chr2013 | Mobile element protein | |||||
| * | ? | CP043523 | 838360 = | 548 (1.030) | 295 (0.580) +CACCGAG |
121/280 | 10.0 | 36.1% | intergenic (‑66/+92) | FTN78_chr0888/FTN78_chr0889 | hypothetical protein/General stress protein, Gls24 family |
| ? | CP043523 | 847992 = | NA (NA) | coding (239/255 nt) | FTN78_chr0898 | Mobile element protein | |||||
| * | ? | CP043523 | = 1883698 | 251 (0.470) | 238 (0.560) +29 bp |
86/236 | 13.2 | 59.8% | intergenic (+101/‑53) | FTN78_chr1928/FTN78_chr1929 | Transposase TnpA/Transposase TnpA |
| ? | CP043523 | 1883724 = | 149 (0.280) | intergenic (+127/‑27) | FTN78_chr1928/FTN78_chr1929 | Transposase TnpA/Transposase TnpA | |||||
| * | ? | CP043523 | = 1861545 | 4307 (8.100) | 275 (0.520) | 105/294 | 14.5 | 10.7% | coding (355/681 nt) | FTN78_chr1909 | Mobile element protein |
| ? | CP043523 | 1882699 = | 265 (0.500) | intergenic (+410/‑145) | FTN78_chr1926/FTN78_chr1927 | hypothetical protein/3‑ketoacyl‑CoA thiolase, Acetyl‑CoA acetyltransferase | |||||
| * | ? | CP043523 | = 795292 | 491 (0.920) | 233 (0.460) +CTCGGTG |
88/280 | 17.2 | 32.0% | coding (395/411 nt) | FTN78_chr0848 | Mobile element protein |
| ? | CP043523 | 838360 = | 548 (1.030) | intergenic (‑66/+92) | FTN78_chr0888/FTN78_chr0889 | hypothetical protein/General stress protein, Gls24 family | |||||
| * | ? | CP043523 | 1 = | 0 (0.000) | 6958 (13.090) | 93/294 | 17.3 | 100% | intergenic (–/+2) | –/FTN78_chr0001 | –/Mobile element protein |
| ? | CP043523 | = 2416272 | 0 (0.000) | intergenic (+231/–) | FTN78_chr2511/– | tRNA‑Leu/– | |||||
| * | ? | CP043523 | 1400514 = | 520 (0.980) | 215 (0.450) +AAACTCCTTTTTTAAT |
63/262 | 22.6 | 31.8% | intergenic (+110/‑3) | FTN78_chr1417/FTN78_chr1418 | Transcriptional regulator/neutral endopeptidase |
| ? | CP043523 | 1439105 = | 518 (0.970) | intergenic (‑98/+105) | FTN78_chr1453/FTN78_chr1454 | tyrosine phosphatase/Oligopeptide ABC transporter, periplasmic oligopeptide‑binding protein OppA | |||||
| * | ? | CP043523 | 336292 = | 542 (1.020) | 144 (0.280) +CTCGGTG |
60/280 | 25.5 | 21.7% | intergenic (+518/+92) | FTN78_chr0384/FTN78_chr0385 | tRNA‑specific adenosine‑34 deaminase/Mobile element protein |
| ? | CP043523 | 838360 = | 548 (1.030) | intergenic (‑66/+92) | FTN78_chr0888/FTN78_chr0889 | hypothetical protein/General stress protein, Gls24 family | |||||