mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | BS168_reference_genome | 96,240 | G→A | 10.7% | intergenic (+19/‑152) | trnJ‑Ala → / → rrnW‑16S | tRNA‑Ala/ribosomal RNA‑16S |
| RA | BS168_reference_genome | 143,659 | C→T | 100% | S100F (TCT→TTT) | rpsE → | ribosomal protein S5 |
| RA | BS168_reference_genome | 146,055 | C→T | 7.0% | P60L (CCT→CTT) | adk → | adenylate kinase |
| RA | BS168_reference_genome | 165,749 | Δ1 bp | 100% | intergenic (+42/‑5) | rrnI‑5S → / → trnI‑Asn | ribosomal RNA‑5S/tRNA‑Asn |
| RA | BS168_reference_genome | 165,751 | Δ1 bp | 100% | intergenic (+44/‑3) | rrnI‑5S → / → trnI‑Asn | ribosomal RNA‑5S/tRNA‑Asn |
| RA | BS168_reference_genome | 165,825:1 | +C | 100% | noncoding (72/72 nt) | trnI‑Asn → | tRNA‑Asn |
| RA | BS168_reference_genome | 166,037:1 | +T | 100% | intergenic (+4/‑27) | trnI‑Gly → / → trnI‑Arg | tRNA‑Gly/tRNA‑Arg |
| RA | BS168_reference_genome | 166,344 | Δ1 bp | 100% | intergenic (+16/‑156) | trnI‑Ala → / → rrnH‑16S | tRNA‑Ala/ribosomal RNA‑16S |
| RA | BS168_reference_genome | 186,061 | T→G | 19.5% | K126N (AAA→AAC) | ybbC ← | conserved protein of unknown function |
| RA | BS168_reference_genome | 193,897 | G→A | 5.3% | G43G (GGC→GGT) | ybbK ← | conserved protein of unknown function |
| RA | BS168_reference_genome | 209,957 | G→T | 5.8% | G109C (GGT→TGT) | ybcF → | putative enzyme; prophage 1 region |
| RA | BS168_reference_genome | 278,734 | G→A | 6.8% | A120T (GCA→ACA) | ycbL → | two‑component response regulator [YcbM] |
| RA | BS168_reference_genome | 303,830 | G→A | 5.9% | P160S (CCC→TCC) | cwlK ← | murein L,D:‑endopeptidase |
| RA | BS168_reference_genome | 330,016 | C→A | 5.6% | C81* (TGC→TGA) | lctE → | L‑lactate dehydrogenase |
| RA | BS168_reference_genome | 333,932 | G→A | 81.0% | L16L (CTC→CTT) | mdr ← | multidrug‑efflux transporter |
| RA | BS168_reference_genome | 376,018 | Δ1 bp | 100% | intergenic (‑220/‑14) | hxlA ← / → hxlR | 3‑hexulose‑6‑phosphate synthase (HPS)/positive regulator of hxlAB expression (formaldehyde sensing) |
| RA | BS168_reference_genome | 390,006 | A→C | 19.2% | T755P (ACA→CCA) | srfAB → | surfactin synthetase |
| RA | BS168_reference_genome | 434,334 | G→A | 5.5% | G27S (GGC→AGC) | pbtP → | petrobactin iron‑siderophore ABC transporter (ATP‑binding protein) |
| RA | BS168_reference_genome | 485,993 | G→T | 13.3% | intergenic (+37/‑439) | ydaN → / → kimA | putative regulator of exopolysaccharide synthesis/cyclic di‑AMP controlled transporter of potassium |
| RA | BS168_reference_genome | 501,094 | C→T | 5.6% | T310I (ACT→ATT) | dctP → | C4‑dicarboxylate transport protein |
| RA | BS168_reference_genome | 507,361 | T→G | 10.1% | F166V (TTT→GTT) | ydbO → | putative cation efflux system |
| RA | BS168_reference_genome | 515,053 | G→C | 38.7% | S188W (TCG→TGG) | ydcA ← | putative rhomboid protease |
| RA | BS168_reference_genome | 557,865:1 | +T | 100% | intergenic (+416/‑8) | yddT → / → ydzN | putative exported phage protein/hypothetical protein |
| RA | BS168_reference_genome | 577,462 | A→T | 6.5% | H224Q (CAT→CAA) | ydeR ← | putative efflux transporter |
| RA | BS168_reference_genome | 792,925 | G→A | 6.7% | A82T (GCA→ACA) | cypD → | bifunctional P‑450/NADPH‑P450 reductase 1 |
| RA | BS168_reference_genome | 859,991 | G→A | 8.1% | D83N (GAC→AAC) | sufLB → | general stress protein 18; deglycase |
| RA | BS168_reference_genome | 892,022 | A→T | 100% | N196I (AAT→ATT) | malR → | transcriptional activator of the Mal operon |
| RA | BS168_reference_genome | 961,032:1 | +A | 100% | intergenic (‑46/‑362) | katA ← / → ssuB | vegetative catalase 1/aliphatic sulfonate ABC transporter (ATP‑binding protein) |
| RA | BS168_reference_genome | 1,045,961 | T→C | 6.1% | V215A (GTT→GCT) | bmrC → | efflux ABC transporter (ATP‑binding protein) |
| RA | BS168_reference_genome | 1,073,374 | C→T | 92.3% | W115* (TGG→TAG) | scoC ← | transcriptional regulator of extracellular protease production, sporulation and bacilysin production (MarR family) |
| RA | BS168_reference_genome | 1,073,426 | C→T | 9.4% | D98N (GAT→AAT) | scoC ← | transcriptional regulator of extracellular protease production, sporulation and bacilysin production (MarR family) |
| RA | BS168_reference_genome | 1,271,830 | G→A | 6.3% | R400R (CGG→CGA) | manR → | transcriptional DNA‑binding activator |
| RA | BS168_reference_genome | 1,291,923 | T→G | 40.4% | F194V (TTT→GTT) | cypE → | cytochrome P450 CYP109B1, monooxygenase |
| RA | BS168_reference_genome | 1,317,152:1 | +GT | 100% | intergenic (+23/+5) | phrA → / ← yjpA | secreted inhibitor of the activity of phosphatase RapA (quorum sensing)/putative enzyme |
| RA | BS168_reference_genome | 1,317,153:1 | +T | 100% | intergenic (+24/+4) | phrA → / ← yjpA | secreted inhibitor of the activity of phosphatase RapA (quorum sensing)/putative enzyme |
| RA | BS168_reference_genome | 1,359,996 | T→C | 7.4% | F181F (TTT→TTC) | proCC → | redundant pyrroline‑5‑carboxylate reductase |
| RA | BS168_reference_genome | 1,474,890 | C→T | 100% | L45L (TTG→TTA) | kre ← | regulator of transcription factor ComK function via modulation of mRNA stability |
| RA | BS168_reference_genome | 1,556,359 | G→T | 5.6% | E725D (GAG→GAT) | pycA → | pyruvate carboxylase |
| RA | BS168_reference_genome | 1,565,798 | C→A | 16.8% | intergenic (‑89/‑51) | ylbA ← / → ylbB | conserved hypothetical protein/putative enzyme |
| RA | BS168_reference_genome | 1,648,989 | G→C | 24.2% | D351H (GAC→CAC) | rsmB → | RNA‑binding Sun protein; 16S rRNA m5C967 methyltransferase, S‑adenosyl‑L‑methionine‑dependent |
| RA | BS168_reference_genome | 1,690,758 | C→G | 74.0% | R214G (CGT→GGT) | codY → | transcriptional regulator, GTP and BCAA‑dependent |
| RA | BS168_reference_genome | 1,708,535 | A→G | 5.8% | A274A (GCA→GCG) | flhA → | component of the flagellar export machinery |
| RA | BS168_reference_genome | 1,944,411 | A→G | 5.1% | I415T (ATT→ACT) | xynD ← | arabinoxylan arabinofuranohydrolase |
| RA | BS168_reference_genome | 1,953,412 | T→C | 6.8% | E368E (GAA→GAG) | ldeHA ← | biotin carboxylase for subunit LdeHB of methylcrotonyl‑CoA carboxylase |
| RA | BS168_reference_genome | 1,988,649 | A→G | 7.8% | P533P (CCT→CCC) | ppsB ← | nonribosomal plipastatin synthetase B involved in synthesis of plipastatin |
| RA | BS168_reference_genome | 2,003,223 | G→T | 30.6% | intergenic (+41/+53) | iseA → / ← trnSL‑Arg1 | inhibitor of DL‑endopeptidases involved in cell‑separation/tRNA‑Arg |
| RA | BS168_reference_genome | 2,097,080:1 | +A | 100% | intergenic (‑104/+46) | azoJ ← / ← yocK | FMN‑dependent NADH‑azoreductase/putative general stress protein |
| RA | BS168_reference_genome | 2,098,463 | T→A | 6.4% | K110N (AAA→AAT) | yocM ← | putative chaperone |
| RA | BS168_reference_genome | 2,128,521 | C→T | 8.3% | Q182Q (CAG→CAA) | yodD ← | putative hydrolase |
| RA | BS168_reference_genome | 2,141,680 | Δ1 bp | 6.1% | coding (46/828 nt) | kamB ← | epsilon‑amino‑beta‑lysine acetyl transferase |
| RA | BS168_reference_genome | 2,143,167 | C→T | 10.4% | C170Y (TGT→TAT) | yodR ← | putative acyloate‑acetoacetate CoA‑transferase |
| RA | BS168_reference_genome | 2,148,040 | G→A | 9.7% | A21V (GCG→GTG) | cgeD ← | putative glycosyltransferase involved in maturation of the outermost layer of the spore |
| RA | BS168_reference_genome | 2,178,088 | A→T | 5.4% | S476T (TCA→ACA) | dpoL ← | DNA polymerase with 3'‑5' exonuclease activity; phage SPbeta |
| RA | BS168_reference_genome | 2,253,230 | G→C | 6.0% | Q1359H (CAG→CAC) | cwlP → | lytic transglycosylase; SPbeta phage protein |
| RA | BS168_reference_genome | 2,271,424 | T→C | 100% | R78R (AGA→AGG) | uvrX ← | lesion bypass phage DNA polymerase; phage SPbeta |
| RA | BS168_reference_genome | 2,271,505 | C→T | 100% | V51V (GTG→GTA) | uvrX ← | lesion bypass phage DNA polymerase; phage SPbeta |
| RA | BS168_reference_genome | 2,271,523 | A→C | 100% | D45E (GAT→GAG) | uvrX ← | lesion bypass phage DNA polymerase; phage SPbeta |
| RA | BS168_reference_genome | 2,345,473 | T→C | 5.3% | Y220C (TAT→TGT) | dnaD ← | DNA‑remodelling primosomal protein |
| RA | BS168_reference_genome | 2,369,488 | T→G | 6.4% | G293G (GGA→GGC) | tyrA ← | prephenate dehydrogenase |
| RA | BS168_reference_genome | 2,374,282 | A→G | 7.8% | pseudogene (607/750 nt) | trpC ← | indole‑3‑glycerol phosphate synthase |
| RA | BS168_reference_genome | 2,374,283 | G→T | 7.8% | pseudogene (606/750 nt) | trpC ← | indole‑3‑glycerol phosphate synthase |
| RA | BS168_reference_genome | 2,374,296 | A→G | 6.1% | pseudogene (593/750 nt) | trpC ← | indole‑3‑glycerol phosphate synthase |
| RA | BS168_reference_genome | 2,387,878:1 | +A | 100% | coding (711/735 nt) | yphF ← | putative lipoprotein of unknown function |
| RA | BS168_reference_genome | 2,480,646 | 2 bp→AT | 100% | intergenic (+21/+103) | zwf → / ← gndA | glucose‑6‑phosphate 1‑dehydrogenase (NADP‑dependent)/NADP+‑dependent 6‑P‑gluconate dehydrogenase |
| RA | BS168_reference_genome | 2,480,654 | Δ1 bp | 100% | intergenic (+29/+96) | zwf → / ← gndA | glucose‑6‑phosphate 1‑dehydrogenase (NADP‑dependent)/NADP+‑dependent 6‑P‑gluconate dehydrogenase |
| RA | BS168_reference_genome | 2,480,667 | Δ1 bp | 100% | intergenic (+42/+83) | zwf → / ← gndA | glucose‑6‑phosphate 1‑dehydrogenase (NADP‑dependent)/NADP+‑dependent 6‑P‑gluconate dehydrogenase |
| RA | BS168_reference_genome | 2,518,776 | G→A | 5.7% | S17S (AGC→AGT) | spo0A ← | response regulator, phosphorylated in response to complex YlbF/YmcA/YaaT |
| RA | BS168_reference_genome | 2,566,977 | G→T | 14.8% | Q108K (CAA→AAA) | yqgU ← | putative lipoprotein |
| RA | BS168_reference_genome | 2,581,726:1 | +T | 100% | intergenic (‑109/+45) | pstS ← / ← pbpA | phosphate ABC transporter (phosphate binding lipoprotein)/transpeptidase (penicillin‑binding protein 2A) |
| RA | BS168_reference_genome | 2,739,967 | T→G | 14.5% | L161R (CTC→CGC) | yrpD → | putative lipoprotein |
| RA | BS168_reference_genome | 2,829,602 | T→C | 7.1% | L13L (CTT→CTC) | spoVB → | involved in spore cortex synthesis (stage V sporulation); translocase with flippase function for peptidoglycan synthesis |
| RA | BS168_reference_genome | 2,908,248 | C→A | 5.4% | A164S (GCT→TCT) | sdhC ← | succinate dehydrogenase (cytochrome b558 subunit) |
| RA | BS168_reference_genome | 3,031,556 | C→A | 7.8% | intergenic (‑139/‑58) | ezrA ← / → hisK | negative regulator of FtsZ ring formation/histidinol phosphate phosphatase |
| RA | BS168_reference_genome | 3,041,446 | C→T | 5.5% | Q19* (CAG→TAG) | acuC → | protein deacetylase (regulates AcsA activity) |
| RA | BS168_reference_genome | 3,069,029 | T→G | 28.4% | V41G (GTT→GGT) | pbuO → | hypoxanthine/guanine permease |
| RA | BS168_reference_genome | 3,089,254 | A→C | 24.2% | L387R (CTT→CGT) | bioI ← | cytochrome P450 for pimelic acid formation for biotin biosynthesis |
| RA | BS168_reference_genome | 3,125,061 | A→G | 7.8% | F194S (TTT→TCT) | ytnA ← | putative amino acid permease |
| RA | BS168_reference_genome | 3,212,872 | C→T | 6.4% | Y94Y (TAC→TAT) | tgl → | protein‑glutamine gamma‑glutamyltransferase (transglutaminase) |
| RA | BS168_reference_genome | 3,305,521 | C→A | 16.1% | intergenic (‑260/+78) | paiA ← / ← sufA | polyamine N‑acetyltransferase/sulfur carrier chaperone involved in Fe‑S cluster assembly |
| RA | BS168_reference_genome | 3,315,315 | T→A | 7.6% | H272L (CAT→CTT) | hom ← | homoserine dehydrogenase |
| RA | BS168_reference_genome | 3,373,796 | T→A | 100% | D18E (GAT→GAA) | yuzM → | conserved protein of unknown function |
| RA | BS168_reference_genome | 3,442,493 | T→A | 6.8% | E346V (GAA→GTA) | copA ← | copper transporter ATPase |
| RA | BS168_reference_genome | 3,482,162 | T→G | 5.7% | T182P (ACA→CCA) | gapA ← | glyceraldehyde‑3‑phosphate dehydrogenase (NAD‑dependent, glycolytic) |
| RA | BS168_reference_genome | 3,504,684 | T→G | 19.9% | T134P (ACA→CCA) | ganA ← | short chain beta‑1,4‑galacto‑oligosaccharides beta‑galactosidase (beta‑galacto‑pyranoside hydrolase) |
| RA | BS168_reference_genome | 3,521,702 | C→T | 6.8% | K148K (AAG→AAA) | epsH ← | putative glycosyltransferase involved in biofilm formation |
| RA | BS168_reference_genome | 3,531,109 | C→G | 26.1% | L159V (CTT→GTT) | pnbA → | para‑nitrobenzyl esterase (intracellular esterase B) |
| RA | BS168_reference_genome | 3,542,242 | C→A | 6.4% | L150L (CTG→CTT) | yvdQ ← | conserved protein of unknown function |
| RA | BS168_reference_genome | 3,626,895 | A→C | 22.4% | S40A (TCC→GCC) | yvjA ← | putative integral inner membrane protein |
| RA | BS168_reference_genome | 3,658,838 | G→T | 24.6% | pseudogene (55/486 nt) | tuaAn ← | putative undecaprenyl‑phosphate N‑acetylgalactosaminyl‑1‑phosphate transferase; N‑terminal part of TuaA |
| RA | BS168_reference_genome | 3,672,798 | G→T | 7.1% | intergenic (‑1176/‑131) | yvzI ← / → yvzE | putative CDP‑glycerol:poly(glycerophosphate) glycerophosphotransferase (fragment)/putative UTP‑glucose‑1‑phosphate uridylyltransferase (UDP‑glucose pyrophosphorylase) (UDPGP) (fragment) |
| RA | BS168_reference_genome | 3,702,947 | C→T | 5.5% | H185H (CAC→CAT) | rbsK → | ribokinase |
| RA | BS168_reference_genome | 3,731,793 | A→G | 6.4% | intergenic (‑24/+29) | ptpZ ← / ← ptkA | protein tyrosine‑phosphatase/maintenance protein tyrosine kinase involved in biofilm formation |
| RA | BS168_reference_genome | 3,770,058:1 | +A | 100% | intergenic (‑250/+46) | ywzF ← / ← csbD | conserved protein of unknown function/stress response protein |
| RA | BS168_reference_genome | 3,834,805 | C→T | 6.1% | A172A (GCG→GCA) | argS ← | arginyl‑tRNA synthetase |
| RA | BS168_reference_genome | 3,837,955 | A→C | 24.3% | N39T (AAC→ACC) | albC → | putative transporter involved in subtilosin production |
| RA | BS168_reference_genome | 3,865,646 | T→G | 20.2% | K227N (AAA→AAC) | pta ← | phosphotransacetylase |
| RA | BS168_reference_genome | 3,919,423 | C→A | 9.8% | L404L (CTG→CTT) | galT ← | galactose‑1‑phosphate uridyltransferase |
| RA | BS168_reference_genome | 3,935,823 | Δ1 bp | 100% | intergenic (+35/+1) | ywbE → / ← rlmI | conserved protein of unknown function/large subunit ribosomal RNA m5C1962 methyltransferase |
| RA | BS168_reference_genome | 3,966,634 | G→A | 9.6% | P546P (CCG→CCA) | katX → | major catalase in spores |
| RA | BS168_reference_genome | 3,973,838 | T→G | 12.0% | K418N (AAA→AAC) | cydD ← | ABC membrane transporter (ATP‑binding protein) required for cytochrome bb' function (reductant efflux pump) |
| RA | BS168_reference_genome | 4,021,185:1 | +T | 5.8% | coding (122/330 nt) | yxiH ← | conserved protein of unknown function |
| RA | BS168_reference_genome | 4,072,534 | C→T | 5.4% | R147H (CGT→CAT) | tpeJ ← | two‑component response regulator [TpeK(YxdK)] |
| RA | BS168_reference_genome | 4,090,006 | T→G | 12.9% | Y435S (TAC→TCC) | htpG ← | class III heat‑shock protein (ATP‑dependent molecular chaperone HSP90) |
| RA | BS168_reference_genome | 4,093,357 | A→C | 16.7% | S161A (TCT→GCT) | yxbF ← | putative transcriptional regulator |
| RA | BS168_reference_genome | 4,099,811 | T→G | 5.2% | F296V (TTT→GTT) | asnH → | asparagine synthetase (glutamine‑hydrolyzing) |
| RA | BS168_reference_genome | 4,108,412 | T→G | 24.4% | S119A (TCG→GCG) | yxnA → | putative oxidoreductase |
| RA | BS168_reference_genome | 4,121,077 | G→T | 12.1% | intergenic (+21/+89) | ahpF → / ← bglA | alkyl hydroperoxide reductase (large subunit)/aryl‑6‑phospho‑beta‑glucosidase |
| RA | BS168_reference_genome | 4,153,115 | G→T | 100% | L192I (CTT→ATT) | walK ← | two‑component sensor histidine kinase [YycG] |
| RA | BS168_reference_genome | 4,155,390:1 | +A | 100% | intergenic (‑181/+43) | trnY‑Lys ← / ← purA | tRNA‑Lys/adenylosuccinate synthetase |
| RA | pSIJ663_pHT315_araE_xy | 121 | G→C | 5.3% | intergenic (–/‑2857) | – / → eryR | –/– |
| RA | pSIJ663_pHT315_araE_xy | 131 | G→C | 7.0% | intergenic (–/‑2847) | – / → eryR | –/– |
| RA | pSIJ663_pHT315_araE_xy | 137 | A→C | 5.0% | intergenic (–/‑2841) | – / → eryR | –/– |
| RA | pSIJ663_pHT315_araE_xy | 2,179 | Δ1 bp | 100% | intergenic (–/‑799) | – / → eryR | –/– |
| JC | pSIJ663_pHT315_araE_xy | 2,655 | Δ3 bp | 100% | intergenic (–/‑321) | – / → eryR | –/– |
| RA | pSIJ663_pHT315_araE_xy | 3,729 | T→G | 7.2% | intergenic (+14/‑142) | eryR → / → ampR | –/– |
| RA | pSIJ663_pHT315_araE_xy | 3,735 | A→T | 9.8% | intergenic (+20/‑136) | eryR → / → ampR | –/– |
| RA | pSIJ663_pHT315_araE_xy | 3,741 | G→T | 9.9% | intergenic (+26/‑130) | eryR → / → ampR | –/– |
| RA | pSIJ663_pHT315_araE_xy | 3,743 | A→T | 5.1% | intergenic (+28/‑128) | eryR → / → ampR | –/– |
| RA | pSIJ663_pHT315_araE_xy | 3,749 | A→T | 5.2% | intergenic (+34/‑122) | eryR → / → ampR | –/– |
| RA | pSIJ663_pHT315_araE_xy | 3,783 | G→T | 5.3% | intergenic (+68/‑88) | eryR → / → ampR | –/– |
| JC | pSIJ663_pHT315_araE_xy | 3,843 | Δ5 bp | 100% | intergenic (+128/‑24) | eryR → / → ampR | –/– |
| RA | pSIJ663_pHT315_araE_xy | 4,625 | A→C | 6.4% | K252T (AAG→ACG) | ampR → | |
| RA | pSIJ663_pHT315_araE_xy | 4,648 | T→A | 10.6% | Y260N (TAC→AAC) ‡ | ampR → | |
| RA | pSIJ663_pHT315_araE_xy | 4,649 | A→C | 8.3% | Y260S (TAC→TCC) ‡ | ampR → | |
| RA | pSIJ663_pHT315_araE_xy | 5,049 | C→T | 100% | intergenic (+318/–) | ampR → / – | –/– |
| RA | pSIJ663_pHT315_araE_xy | 5,173 | T→G | 6.9% | intergenic (+442/–) | ampR → / – | –/– |
| RA | pSIJ663_pHT315_araE_xy | 5,302 | A→C | 6.1% | intergenic (+571/–) | ampR → / – | –/– |
| RA | pSIJ663_pHT315_araE_xy | 5,464 | T→G | 6.3% | intergenic (+733/–) | ampR → / – | –/– |
| RA | pSIJ663_pHT315_araE_xy | 5,467 | T→G | 5.9% | intergenic (+736/–) | ampR → / – | –/– |
| RA | pSIJ663_pHT315_araE_xy | 5,612 | T→A | 71.5% | intergenic (+881/–) | ampR → / – | –/– |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | BS168_reference_genome | 160952–161238 | 165598–161669 | 432–4647 | 16 [14] | [6] 18 | [rrnI‑16S]–[rrnI‑5S] | [rrnI‑16S],rrnI‑23S,[rrnI‑5S] |
| * | * | ÷ | BS168_reference_genome | 166445–166813 | 171219–170393 | 3581–4775 | 15 [12] | [13] 15 | rrnH‑16S–[rrnH‑5S] | rrnH‑16S,rrnH‑23S,[rrnH‑5S] |
| * | * | ÷ | BS168_reference_genome | 171470–171677 | 176208–172977 | 1301–4739 | 18 [11] | [14] 15 | rrnG‑16S–[rrnG‑5S] | rrnG‑16S,rrnG‑23S,[rrnG‑5S] |
| * | * | ÷ | BS168_reference_genome | 3485361–3485463 | 3486758 | 1296–1398 | 16 [14] | [0] 42 | [araE]–[araR] | [araE],[araR] |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | BS168_reference_genome | 9457 = | 96 (1.550) | 3626 (61.670) | 8/222 | NT | 97.5% | coding (2464/2466 nt) | gyrA | DNA gyrase (subunit A) |
| ? | BS168_reference_genome | 3484075 = | 94 (1.600) | coding (1392/1395 nt) | araE | arabinose‑related compounds permease | |||||
| * | ? | BS168_reference_genome | 3486759 = | 0 (0.000) | 19 (0.010) +50 bp |
16/134 | NT | 91.8% | intergenic (+1/+48) | araR/yvbT | transcriptional repressor of the ara regulon (LacI family)/putative alkanal monooxygenase |
| ? | pSIJ663_pHT315_araE_xy | 9781 = | 6 (0.000) | intergenic (+5050/–) | ampR/– | –/– | |||||
| * | ? | pSIJ663_pHT315_araE_xy | = 5551 | 18 (0.000) | 10379 (1.110) | 204/224 | NT | 99.8% | intergenic (+820/–) | ampR/– | –/– |
| ? | pSIJ663_pHT315_araE_xy | 9889 = | NA (NA) | intergenic (+5158/–) | ampR/– | –/– | |||||
| * | ? | pSIJ663_pHT315_araE_xy | = 5614 | 4 (0.000) | 13 (0.000) | 11/228 | NT | 79.0% | intergenic (+883/–) | ampR/– | –/– |
| ? | pSIJ663_pHT315_araE_xy | 9532 = | 3 (0.000) | intergenic (+4801/–) | ampR/– | –/– | |||||