mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (lowest skew 10 of 41 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 2762148 = | 367 (1.010) | 5 (0.010) | 3/252 | NT | 1.3% | intergenic (‑52/+11) | sirC/cysJ | Precorrin‑2 dehydrogenase/Sulfite reductase [NADPH] flavoprotein alpha‑component |
| ? | USA300TCH1516_ALE | 2762191 = | 380 (1.080) | coding (1849/1881 nt) | cysJ | Sulfite reductase [NADPH] flavoprotein alpha‑component | |||||
| * | ? | USA300TCH1516_ALE | 2761242 = | 284 (0.780) | 3 (0.010) | 3/244 | NT | 1.1% | intergenic (‑244/+249) | citN/sirC | Citrate transporter/Precorrin‑2 dehydrogenase |
| ? | USA300TCH1516_ALE | 2761289 = | 253 (0.740) | intergenic (‑291/+202) | citN/sirC | Citrate transporter/Precorrin‑2 dehydrogenase | |||||
| * | ? | USA300TCH1516_ALE | 2679952 = | 329 (0.900) | 6 (0.020) | 5/230 | NT | 2.2% | intergenic (+4/+756) | ssaA2_4/USA300HOU_RS13810 | Staphylococcal secretory antigen ssaA2/hypothetical protein |
| ? | USA300TCH1516_ALE | 2680007 = | 245 (0.760) | intergenic (+59/+701) | ssaA2_4/USA300HOU_RS13810 | Staphylococcal secretory antigen ssaA2/hypothetical protein | |||||
| * | ? | USA300TCH1516_ALE | 2660570 = | 361 (0.990) | 5 (0.020) | 5/236 | NT | 1.6% | intergenic (+12/+237) | ldhD_1/ybiV | D‑lactate dehydrogenase/Sugar phosphatase YbiV |
| ? | USA300TCH1516_ALE | 2660603 = | 281 (0.850) | intergenic (+45/+204) | ldhD_1/ybiV | D‑lactate dehydrogenase/Sugar phosphatase YbiV | |||||
| * | ? | USA300TCH1516_ALE | 2601406 = | 429 (1.180) | 4 (0.010) | 5/236 | NT | 1.1% | intergenic (‑818/+49) | dapF/USA300HOU_RS13395 | Diaminopimelate epimerase/hypothetical protein |
| ? | USA300TCH1516_ALE | 2601436 = | 334 (1.010) | intergenic (‑848/+19) | dapF/USA300HOU_RS13395 | Diaminopimelate epimerase/hypothetical protein | |||||
| * | ? | USA300TCH1516_ALE | 2561201 = | 398 (1.090) | 4 (0.010) | 5/232 | NT | 1.2% | intergenic (+30/+33) | USA300HOU_RS13195/cpdA | hypothetical protein/3',5'‑cyclic adenosine monophosphate phosphodiesterase CpdA |
| ? | USA300TCH1516_ALE | 2561237 = | 330 (1.020) | coding (804/807 nt) | cpdA | 3',5'‑cyclic adenosine monophosphate phosphodiesterase CpdA | |||||
| * | ? | USA300TCH1516_ALE | = 2525589 | 316 (0.870) | 6 (0.020) | 4/230 | NT | 2.1% | intergenic (‑161/+69) | sirB/ytmI | Sirohydrochlorin ferrochelatase/putative N‑acetyltransferase YtmI |
| ? | USA300TCH1516_ALE | = 2525624 | 289 (0.900) | intergenic (‑196/+34) | sirB/ytmI | Sirohydrochlorin ferrochelatase/putative N‑acetyltransferase YtmI | |||||
| * | ? | USA300TCH1516_ALE | = 2256409 | 334 (0.920) | 4 (0.010) | 4/232 | NT | 1.3% | intergenic (+62/+59) | deoD1/dps | Purine nucleoside phosphorylase DeoD‑type 1/General stress protein 20U |
| ? | USA300TCH1516_ALE | = 2256428 | 318 (0.980) | intergenic (+81/+40) | deoD1/dps | Purine nucleoside phosphorylase DeoD‑type 1/General stress protein 20U | |||||
| * | ? | USA300TCH1516_ALE | = 1989774 | 335 (0.920) | 4 (0.010) | 3/240 | NT | 1.2% | coding (478/1128 nt) | queG | Epoxyqueuosine reductase |
| ? | USA300TCH1516_ALE | = 1989799 | 342 (1.020) | coding (453/1128 nt) | queG | Epoxyqueuosine reductase | |||||
| * | ? | USA300TCH1516_ALE | 1855105 = | 305 (0.840) | 4 (0.010) +GTAAT |
4/250 | NT | 1.3% | intergenic (‑421/+119) | ccpA/aroF | Catabolite control protein A/Phospho‑2‑dehydro‑3‑deoxyheptonate aldolase |
| ? | USA300TCH1516_ALE | 1855145 = | 333 (0.910) | intergenic (‑461/+79) | ccpA/aroF | Catabolite control protein A/Phospho‑2‑dehydro‑3‑deoxyheptonate aldolase | |||||