mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | ||||||
|---|---|---|---|---|---|---|
| evidence | position | mutation | freq | annotation | gene | description |
| RA | 9,907 | A→C | 6.4% | intergenic (+14/+21) | mog → / ← satP | molybdochelatase incorporating molybdenum into molybdopterin/succinate‑acetate transporter |
| RA | 9,908 | G→T | 6.4% | intergenic (+15/+20) | mog → / ← satP | molybdochelatase incorporating molybdenum into molybdopterin/succinate‑acetate transporter |
| RA | 83,587 | A→C | 9.3% | intergenic (‑58/+35) | leuA ← / ← leuL | 2‑isopropylmalate synthase/leu operon leader peptide |
| RA | 83,590 | G→T | 9.5% | intergenic (‑61/+32) | leuA ← / ← leuL | 2‑isopropylmalate synthase/leu operon leader peptide |
| RA | 120,154 | Δ1 bp | 5.3% | intergenic (+19/+24) | ampE → / ← aroP | ampicillin resistance inner membrane protein; putative signaling protein in beta‑lactamase regulation/aromatic amino acid transporter |
| RA | 120,158:1 | +A | 5.3% | intergenic (+23/+20) | ampE → / ← aroP | ampicillin resistance inner membrane protein; putative signaling protein in beta‑lactamase regulation/aromatic amino acid transporter |
| RA | 151,519 | A→C | 5.9% | I27M (ATT→ATG) | yadK ← | putative fimbrial‑like adhesin protein |
| RA | 151,522 | G→T | 6.1% | A26A (GCC→GCA) | yadK ← | putative fimbrial‑like adhesin protein |
| RA | 169,152 | G→T | 8.3% | G557C (GGC→TGC) | fhuA → | ferrichrome outer membrane transporter |
| RA | 212,970 | G→A | 5.2% | A214T (GCA→ACA) | tilS → | tRNA(Ile)‑lysidine synthetase |
| RA | 242,344 | C→G | 9.7% | P320P (CCG→CCC) | fadE ← | acyl coenzyme A dehydrogenase |
| MC JC | 257,908 | Δ776 bp | 100% | [crl] | [crl] | |
| RA | 285,882 | T→G | 5.4% | I163S (ATC→AGC) | yagG → | CP4‑6 prophage; putative sugar transporter |
| RA | 289,256 | G→C | 5.4% | intergenic (‑94/+45) | yagI ← / ← argF | CP4‑6 prophage; putative DNA‑binding transcriptional regulator/ornithine carbamoyltransferase 2, chain F; CP4‑6 prophage |
| RA | 289,257 | T→A | 5.2% | intergenic (‑95/+44) | yagI ← / ← argF | CP4‑6 prophage; putative DNA‑binding transcriptional regulator/ornithine carbamoyltransferase 2, chain F; CP4‑6 prophage |
| RA | 339,756 | T→C | 7.1% | intergenic (+13/‑409) | yahG → / → yahI | DUF1116 family protein/carbamate kinase‑like protein |
| RA | 339,761 | G→C | 7.0% | intergenic (+18/‑404) | yahG → / → yahI | DUF1116 family protein/carbamate kinase‑like protein |
| RA | 435,390 | T→A | 5.5% | L85Q (CTG→CAG) | nusB → | transcription antitermination protein |
| RA | 435,396 | T→A | 5.3% | I87N (ATT→AAT) | nusB → | transcription antitermination protein |
| RA | 438,924 | G→A | 5.3% | I418I (ATC→ATT) | dxs ← | 1‑deoxyxylulose‑5‑phosphate synthase, thiamine triphosphate‑binding, FAD‑requiring |
| RA | 454,853 | T→C | 6.4% | intergenic (+64/‑280) | bolA → / → tig | stationary‑phase morphogene, transcriptional repressor for mreB; also regulator for dacA, dacC, and ampC/peptidyl‑prolyl cis/trans isomerase (trigger factor) |
| RA | 480,236 | C→G | 6.0% | E25Q (GAG→CAG) | hha ← | modulator of gene expression, with H‑NS |
| RA | 480,237 | C→G | 6.1% | L24L (CTG→CTC) | hha ← | modulator of gene expression, with H‑NS |
| RA | 524,391 | G→T | 6.2% | P377P (CCG→CCT) | rhsD → | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| RA | 524,394 | A→C | 6.4% | A378A (GCA→GCC) | rhsD → | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| RA | 644,030 | A→G | 6.4% | intergenic (‑63/+167) | rnk ← / ← rna | regulator of nucleoside diphosphate kinase/ribonuclease I |
| RA | 644,034 | T→C | 6.2% | intergenic (‑67/+163) | rnk ← / ← rna | regulator of nucleoside diphosphate kinase/ribonuclease I |
| RA | 644,036 | A→T | 6.4% | intergenic (‑69/+161) | rnk ← / ← rna | regulator of nucleoside diphosphate kinase/ribonuclease I |
| RA | 644,038 | G→A | 5.4% | intergenic (‑71/+159) | rnk ← / ← rna | regulator of nucleoside diphosphate kinase/ribonuclease I |
| RA | 644,042 | C→T | 6.2% | intergenic (‑75/+155) | rnk ← / ← rna | regulator of nucleoside diphosphate kinase/ribonuclease I |
| RA | 654,560 | A→C | 6.3% | intergenic (+18/+23) | citB → / ← dcuC | response regulator in two‑component regulatory system with CitA/anaerobic C4‑dicarboxylate transport |
| RA | 654,563 | C→G | 5.7% | intergenic (+21/+20) | citB → / ← dcuC | response regulator in two‑component regulatory system with CitA/anaerobic C4‑dicarboxylate transport |
| RA | 654,566 | G→T | 5.7% | intergenic (+24/+17) | citB → / ← dcuC | response regulator in two‑component regulatory system with CitA/anaerobic C4‑dicarboxylate transport |
| RA | 657,531 | T→G | 7.7% | intergenic (+30/+24) | cspE → / ← flc | constitutive cold shock family transcription antitermination protein; negative regulator of cspA transcription; RNA melting protein; ssDNA‑binding protein/fluoride efflux channel, dual topology membrane protein |
| RA | 657,535 | C→A | 7.4% | intergenic (+34/+20) | cspE → / ← flc | constitutive cold shock family transcription antitermination protein; negative regulator of cspA transcription; RNA melting protein; ssDNA‑binding protein/fluoride efflux channel, dual topology membrane protein |
| RA | 672,143 | A→T | 5.1% | I15N (ATC→AAC) | lptE ← | LPS assembly OM complex LptDE, lipoprotein component |
| RA | 672,147 | A→T | 5.4% | L14I (TTA→ATA) | lptE ← | LPS assembly OM complex LptDE, lipoprotein component |
| RA | 792,560 | G→A | 5.2% | A410V (GCG→GTG) | modF ← | molybdate ABC transporter ATPase |
| RA | 824,572 | T→A | 7.0% | intergenic (‑75/‑58) | ybhP ← / → ybhQ | endo/exonuclease/phosphatase family protein/inner membrane protein |
| RA | 824,573 | T→A | 6.8% | intergenic (‑76/‑57) | ybhP ← / → ybhQ | endo/exonuclease/phosphatase family protein/inner membrane protein |
| RA | 847,213 | A→T | 5.9% | intergenic (‑94/+45) | glnP ← / ← glnH | glutamine transporter subunit/glutamine transporter subunit |
| RA | 847,214 | T→A | 6.0% | intergenic (‑95/+44) | glnP ← / ← glnH | glutamine transporter subunit/glutamine transporter subunit |
| RA | 847,215 | A→T | 6.3% | intergenic (‑96/+43) | glnP ← / ← glnH | glutamine transporter subunit/glutamine transporter subunit |
| RA | 857,576 | T→C | 5.5% | intergenic (+21/+220) | ybiT → / ← ybiU | ABC‑F family putative regulatory ATPase/DUF1479 family protein |
| RA | 857,578 | C→G | 5.6% | intergenic (+23/+218) | ybiT → / ← ybiU | ABC‑F family putative regulatory ATPase/DUF1479 family protein |
| RA | 857,580 | G→A | 5.5% | intergenic (+25/+216) | ybiT → / ← ybiU | ABC‑F family putative regulatory ATPase/DUF1479 family protein |
| RA | 915,080 | G→C | 5.6% | intergenic (‑223/+272) | ybjE ← / ← aqpZ | putative transporter/aquaporin Z |
| RA | 915,081 | G→C | 5.6% | intergenic (‑224/+271) | ybjE ← / ← aqpZ | putative transporter/aquaporin Z |
| RA | 985,853 | C→T | 6.3% | intergenic (‑144/+41) | aspC ← / ← ompF | aspartate aminotransferase, PLP‑dependent/outer membrane porin 1a (Ia;b;F) |
| RA | 985,854 | A→T | 6.5% | intergenic (‑145/+40) | aspC ← / ← ompF | aspartate aminotransferase, PLP‑dependent/outer membrane porin 1a (Ia;b;F) |
| RA | 985,855 | A→T | 6.6% | intergenic (‑146/+39) | aspC ← / ← ompF | aspartate aminotransferase, PLP‑dependent/outer membrane porin 1a (Ia;b;F) |
| RA | 985,856 | A→G | 6.6% | intergenic (‑147/+38) | aspC ← / ← ompF | aspartate aminotransferase, PLP‑dependent/outer membrane porin 1a (Ia;b;F) |
| RA | 993,254 | A→G | 6.3% | intergenic (+20/+23) | pepN → / ← ssuB | aminopeptidase N/aliphatic sulfonate ABC transporter ATPase |
| RA | 993,255 | A→C | 6.3% | intergenic (+21/+22) | pepN → / ← ssuB | aminopeptidase N/aliphatic sulfonate ABC transporter ATPase |
| RA | 993,258 | G→T | 6.6% | intergenic (+24/+19) | pepN → / ← ssuB | aminopeptidase N/aliphatic sulfonate ABC transporter ATPase |
| RA | 993,259 | C→T | 6.5% | intergenic (+25/+18) | pepN → / ← ssuB | aminopeptidase N/aliphatic sulfonate ABC transporter ATPase |
| RA | 1,018,321 | T→C | 6.1% | intergenic (‑22/‑164) | ycbZ ← / → matP | putative peptidase/Ter macrodomain organizer matS‑binding protein |
| RA | 1,039,479 | G→A | 7.1% | V62I (GTC→ATC) ‡ | cbdB → | cytochrome bd‑II oxidase, subunit II |
| RA | 1,039,480 | T→C | 5.7% | V62A (GTC→GCC) ‡ | cbdB → | cytochrome bd‑II oxidase, subunit II |
| RA | 1,151,873 | T→A | 6.2% | intergenic (+22/‑66) | acpP → / → fabF | acyl carrier protein (ACP)/3‑oxoacyl‑[acyl‑carrier‑protein] synthase II |
| RA | 1,151,874 | T→A | 6.3% | intergenic (+23/‑65) | acpP → / → fabF | acyl carrier protein (ACP)/3‑oxoacyl‑[acyl‑carrier‑protein] synthase II |
| RA | 1,153,213 | T→A | 5.9% | intergenic (+33/‑87) | fabF → / → pabC | 3‑oxoacyl‑[acyl‑carrier‑protein] synthase II/4‑amino‑4‑deoxychorismate lyase component of para‑aminobenzoate synthase multienzyme complex |
| RA | 1,169,380 | T→C | 9.8% | intergenic (+50/+32) | bhsA → / ← ldtC | biofilm, cell surface and signaling protein/L,D‑transpeptidase linking Lpp to murein |
| RA | 1,169,382 | C→G | 9.9% | intergenic (+52/+30) | bhsA → / ← ldtC | biofilm, cell surface and signaling protein/L,D‑transpeptidase linking Lpp to murein |
| RA | 1,169,384 | G→A | 9.7% | intergenic (+54/+28) | bhsA → / ← ldtC | biofilm, cell surface and signaling protein/L,D‑transpeptidase linking Lpp to murein |
| RA | 1,174,077 | G→A | 10.2% | intergenic (‑113/+15) | mfd ← / ← ycfT | transcription‑repair coupling factor/inner membrane protein |
| RA | 1,174,080 | T→C | 9.8% | intergenic (‑116/+12) | mfd ← / ← ycfT | transcription‑repair coupling factor/inner membrane protein |
| RA | 1,182,764 | G→A | 9.8% | H22H (CAC→CAT) | potD ← | spermidine/putrescine ABC transporter periplasmic binding protein |
| RA | 1,244,289 | G→A | 6.1% | A80V (GCG→GTG) | ycgR ← | flagellar velocity braking protein, c‑di‑GMP‑regulated |
| RA | 1,324,837 | A→C | 5.3% | Y31S (TAT→TCT) ‡ | yciQ → | enhancer of membrane protein expression; putative inner membrane protein |
| RA | 1,324,838 | T→A | 5.3% | Y31* (TAT→TAA) ‡ | yciQ → | enhancer of membrane protein expression; putative inner membrane protein |
| RA | 1,324,839 | G→T | 5.8% | E32* (GAA→TAA) | yciQ → | enhancer of membrane protein expression; putative inner membrane protein |
| RA | 1,344,036 | G→C | 7.4% | T104S (ACT→AGT) | yciT ← | global regulator of transcription; DeoR family |
| RA | 1,344,039 | C→T | 7.1% | R103Q (CGG→CAG) | yciT ← | global regulator of transcription; DeoR family |
| RA | 1,426,417 | T→C | 5.4% | intergenic (+335/‑37) | ydaY → / → tmpR | pseudogene, Rac prophage;Phage or Prophage Related/Rac prophage; pseudogene, tail protein family;Phage or Prophage Related; putative alpha helix protein |
| RA | 1,426,418 | T→G | 5.5% | intergenic (+336/‑36) | ydaY → / → tmpR | pseudogene, Rac prophage;Phage or Prophage Related/Rac prophage; pseudogene, tail protein family;Phage or Prophage Related; putative alpha helix protein |
| RA | 1,426,421 | C→A | 5.3% | intergenic (+339/‑33) | ydaY → / → tmpR | pseudogene, Rac prophage;Phage or Prophage Related/Rac prophage; pseudogene, tail protein family;Phage or Prophage Related; putative alpha helix protein |
| RA | 1,426,422 | G→A | 5.3% | intergenic (+340/‑32) | ydaY → / → tmpR | pseudogene, Rac prophage;Phage or Prophage Related/Rac prophage; pseudogene, tail protein family;Phage or Prophage Related; putative alpha helix protein |
| RA | 1,467,165 | G→A | 5.2% | pseudogene (1774/2513 nt) | ydbA → | pseudogene, autotransporter homolog; interrupted by IS2 and IS30 |
| RA | 1,493,194 | G→C | 7.0% | S242T (AGT→ACT) | trg → | methyl‑accepting chemotaxis protein III, ribose and galactose sensor receptor |
| RA | 1,685,527 | A→G | 100% | G354G (GGT→GGC) | fumC ← | fumarate hydratase (fumarase C),aerobic Class II |
| RA | 1,689,817 | C→A | 9.3% | intergenic (+66/‑35) | manA → / → ydgA | mannose‑6‑phosphate isomerase/DUF945 family protein |
| RA | 1,689,819 | A→T | 9.2% | intergenic (+68/‑33) | manA → / → ydgA | mannose‑6‑phosphate isomerase/DUF945 family protein |
| RA | 1,689,821 | T→G | 9.3% | intergenic (+70/‑31) | manA → / → ydgA | mannose‑6‑phosphate isomerase/DUF945 family protein |
| RA | 1,748,198 | G→A | 6.2% | L356L (CTG→CTA) | ydhS → | putative oxidoreductase |
| RA | 1,810,062 | T→C | 9.1% | intergenic (+14/‑149) | yniC → / → ydjM | 2‑deoxyglucose‑6‑P phosphatase/inner membrane protein regulated by LexA |
| RA | 1,810,065 | T→G | 9.0% | intergenic (+17/‑146) | yniC → / → ydjM | 2‑deoxyglucose‑6‑P phosphatase/inner membrane protein regulated by LexA |
| RA | 1,810,066 | C→A | 9.2% | intergenic (+18/‑145) | yniC → / → ydjM | 2‑deoxyglucose‑6‑P phosphatase/inner membrane protein regulated by LexA |
| RA | 1,810,069 | G→A | 8.6% | intergenic (+21/‑142) | yniC → / → ydjM | 2‑deoxyglucose‑6‑P phosphatase/inner membrane protein regulated by LexA |
| RA | 1,865,682 | G→C | 7.1% | intergenic (‑46/+44) | yeaE ← / ← mipA | aldo‑keto reductase, methylglyoxal to acetol, NADPH‑dependent/scaffolding protein for murein synthesizing machinery |
| MC JC | 1,978,503 | Δ776 bp | 100% | insB1–insA | insB1, insA | |
| RA | 2,017,114 | T→C | 6.3% | G187G (GGT→GGC) | fliI → | flagellum‑specific ATP synthase |
| RA | 2,079,004 | G→C | 7.1% | intergenic (+73/+28) | yoeF → / ← yeeX | pseudogene, CP4‑44 putative prophage remnant;Phage or Prophage Related/UPF0265 family protein |
| RA | 2,085,419 | A→G | 10.0% | V36A (GTG→GCG) | yeeE ← | UPF0394 family inner membrane protein |
| RA | 2,145,313 | C→A | 100% | S683Y (TCC→TAC) | yegE → | putative diguanylate cyclase |
| RA | 2,173,361 | Δ2 bp | 100% | pseudogene (1‑2/442 nt) | gatC ← | pseudogene, galactitol‑specific enzyme IIC component of PTS;transport; Transport of small molecules: Carbohydrates, organic acids, alcohols; PTS system galactitol‑specific enzyme IIC |
| RA | 2,177,332 | C→T | 6.2% | intergenic (‑128/+180) | gatY ← / ← fbaB | D‑tagatose 1,6‑bisphosphate aldolase 2, catalytic subunit/fructose‑bisphosphate aldolase class I |
| RA | 2,177,337 | G→T | 5.8% | intergenic (‑133/+175) | gatY ← / ← fbaB | D‑tagatose 1,6‑bisphosphate aldolase 2, catalytic subunit/fructose‑bisphosphate aldolase class I |
| RA | 2,177,345 | A→G | 6.3% | intergenic (‑141/+167) | gatY ← / ← fbaB | D‑tagatose 1,6‑bisphosphate aldolase 2, catalytic subunit/fructose‑bisphosphate aldolase class I |
| RA | 2,187,314 | C→G | 6.0% | intergenic (+16/+66) | rcnB → / ← yehA | periplasmic modulator of Ni and Co efflux/putative fimbrial‑like adhesin protein |
| RA | 2,211,469 | G→A | 5.5% | S82N (AGC→AAC) | yehR → | lipoprotein, DUF1307 family |
| RA | 2,305,085 | A→G | 13.8% | intergenic (+692/+23) | eco → / ← mqo | ecotin, a serine protease inhibitor/malate dehydrogenase, FAD/NAD(P)‑binding domain |
| RA | 2,305,086 | C→G | 14.0% | intergenic (+693/+22) | eco → / ← mqo | ecotin, a serine protease inhibitor/malate dehydrogenase, FAD/NAD(P)‑binding domain |
| RA | 2,305,087 | C→T | 14.0% | intergenic (+694/+21) | eco → / ← mqo | ecotin, a serine protease inhibitor/malate dehydrogenase, FAD/NAD(P)‑binding domain |
| RA | 2,318,095 | C→G | 100% | L594F (TTG→TTC) | rcsC ← | hybrid sensory kinase in two‑component regulatory system with RcsB and YojN |
| RA | 2,318,506 | C→T | 5.2% | Q457Q (CAG→CAA) | rcsC ← | hybrid sensory kinase in two‑component regulatory system with RcsB and YojN |
| RA | 2,356,082 | G→A | 5.1% | A188T (GCA→ACA) | glpC → | anaerobic sn‑glycerol‑3‑phosphate dehydrogenase, C subunit, 4Fe‑4S iron‑sulfur cluster |
| RA | 2,390,012 | Δ1 bp | 6.0% | intergenic (+48/+36) | yfbP → / ← nuoN | TPR‑like repeats‑containing protein/NADH:ubiquinone oxidoreductase, membrane subunit N |
| RA | 2,390,016:1 | +C | 6.0% | intergenic (+52/+32) | yfbP → / ← nuoN | TPR‑like repeats‑containing protein/NADH:ubiquinone oxidoreductase, membrane subunit N |
| RA | 2,407,898 | A→C | 8.0% | Q113P (CAG→CCG) ‡ | alaA → | glutamate‑pyruvate aminotransferase; glutamic‑pyruvic transaminase (GPT); alanine transaminase |
| RA | 2,407,899 | G→T | 8.3% | Q113H (CAG→CAT) ‡ | alaA → | glutamate‑pyruvate aminotransferase; glutamic‑pyruvic transaminase (GPT); alanine transaminase |
| RA | 2,414,689 | C→G | 6.2% | intergenic (+17/‑58) | ackA → / → pta | acetate kinase A and propionate kinase 2/phosphate acetyltransferase |
| RA | 2,474,878 | T→C | 6.8% | intergenic (+22/‑106) | yfdQ → / → yfdR | CPS‑53 (KpLE1) prophage; uncharacterized protein/CPS‑53 (KpLE1) prophage; conserved protein |
| RA | 2,474,881 | G→A | 7.0% | intergenic (+25/‑103) | yfdQ → / → yfdR | CPS‑53 (KpLE1) prophage; uncharacterized protein/CPS‑53 (KpLE1) prophage; conserved protein |
| RA | 2,525,907 | G→A | 10.6% | intergenic (+16/+23) | yfeN → / ← yfeR | putative outer membrane protein/transcriptional regulator of yefH |
| RA | 2,525,908 | C→G | 10.0% | intergenic (+17/+22) | yfeN → / ← yfeR | putative outer membrane protein/transcriptional regulator of yefH |
| RA | 2,543,803 | C→T | 5.3% | intergenic (‑275/+29) | cysP ← / ← ucpA | thiosulfate‑binding protein/furfural resistance protein, putative short‑chain oxidoreductase |
| RA | 2,543,804 | A→G | 6.3% | intergenic (‑276/+28) | cysP ← / ← ucpA | thiosulfate‑binding protein/furfural resistance protein, putative short‑chain oxidoreductase |
| RA | 2,543,807 | A→T | 5.4% | intergenic (‑279/+25) | cysP ← / ← ucpA | thiosulfate‑binding protein/furfural resistance protein, putative short‑chain oxidoreductase |
| RA | 2,543,808 | A→T | 5.3% | intergenic (‑280/+24) | cysP ← / ← ucpA | thiosulfate‑binding protein/furfural resistance protein, putative short‑chain oxidoreductase |
| RA | 2,543,811 | C→T | 5.5% | intergenic (‑283/+21) | cysP ← / ← ucpA | thiosulfate‑binding protein/furfural resistance protein, putative short‑chain oxidoreductase |
| RA | 2,543,812 | A→G | 5.5% | intergenic (‑284/+20) | cysP ← / ← ucpA | thiosulfate‑binding protein/furfural resistance protein, putative short‑chain oxidoreductase |
| RA | 2,560,317 | A→C | 6.3% | N21H (AAT→CAT) | yffL → | CPZ‑55 prophage; uncharacterized protein |
| RA | 2,560,321 | C→T | 6.4% | A22V (GCT→GTT) | yffL → | CPZ‑55 prophage; uncharacterized protein |
| RA | 2,560,326 | A→G | 6.1% | T24A (ACA→GCA) | yffL → | CPZ‑55 prophage; uncharacterized protein |
| RA | 2,560,330 | G→T | 6.1% | C25F (TGC→TTC) | yffL → | CPZ‑55 prophage; uncharacterized protein |
| RA | 2,561,205 | A→T | 8.6% | intergenic (+307/‑163) | yffL → / → yffM | CPZ‑55 prophage; uncharacterized protein/CPZ‑55 prophage; uncharacterized protein |
| RA | 2,561,206 | A→T | 8.6% | intergenic (+308/‑162) | yffL → / → yffM | CPZ‑55 prophage; uncharacterized protein/CPZ‑55 prophage; uncharacterized protein |
| RA | 2,579,154 | A→C | 8.7% | A163A (GCA→GCC) | talA → | transaldolase A |
| RA | 2,579,157 | G→T | 8.8% | R164R (CGG→CGT) | talA → | transaldolase A |
| RA | 2,596,873 | Δ1 bp | 7.1% | intergenic (‑136/+32) | ypfJ ← / ← purC | putative neutral zinc metallopeptidase/phosphoribosylaminoimidazole‑succinocarboxamide synthetase |
| RA | 2,596,878:1 | +G | 7.0% | intergenic (‑141/+27) | ypfJ ← / ← purC | putative neutral zinc metallopeptidase/phosphoribosylaminoimidazole‑succinocarboxamide synthetase |
| RA | 2,653,367 | G→A | 8.4% | intergenic (+28/‑488) | sseA → / → ryfA | 3‑mercaptopyruvate sulfurtransferase/novel sRNA, function unknown |
| RA | 2,653,372 | T→C | 8.1% | intergenic (+33/‑483) | sseA → / → ryfA | 3‑mercaptopyruvate sulfurtransferase/novel sRNA, function unknown |
| RA | 2,724,412 | A→T | 5.4% | A95A (GCA→GCT) | yfiM → | putative lipoprotein |
| RA | 2,724,413 | A→T | 5.5% | S96C (AGC→TGC) | yfiM → | putative lipoprotein |
| RA | 2,753,986 | A→T | 5.7% | intergenic (+40/+22) | bamE → / ← ratB | lipoprotein component of BamABCDE OM biogenesis complex/UPF0125 family protein |
| RA | 2,761,620 | T→G | 6.3% | K641Q (AAG→CAG) | yfjK ← | radiation resistance protein; DEAD/H helicase‑like protein; CP4‑57 putative defective prophage |
| RA | 2,761,623 | C→A | 6.3% | V640L (GTA→TTA) | yfjK ← | radiation resistance protein; DEAD/H helicase‑like protein; CP4‑57 putative defective prophage |
| RA | 2,765,565 | A→G | 5.9% | M71T (ATG→ACG) | yfjM ← | CP4‑57 prophage; uncharacterized protein |
| RA | 2,778,123 | G→T | 8.3% | intergenic (+341/+23) | ypjF → / ← ypjA | CP4‑57 prophage; toxin of the YpjF‑YfjZ toxin‑antitoxin system/adhesin‑like autotransporter |
| RA | 2,778,124 | A→C | 9.0% | intergenic (+342/+22) | ypjF → / ← ypjA | CP4‑57 prophage; toxin of the YpjF‑YfjZ toxin‑antitoxin system/adhesin‑like autotransporter |
| RA | 2,810,873 | A→G | 6.0% | H35R (CAC→CGC) | mprA → | transcriptional repressor of microcin B17 synthesis and multidrug efflux |
| RA | 2,866,487 | G→C | 5.4% | intergenic (+22/+72) | ygbN → / ← rpoS | putative transporter/RNA polymerase, sigma S (sigma 38) factor |
| RA | 2,906,608 | G→C | 6.5% | intergenic (+25/+35) | ygcG → / ← eno | TPM domain protein, putative phosphatase/enolase |
| RA | 2,961,248 | A→T | 5.7% | L394Q (CTG→CAG) | recC ← | exonuclease V (RecBCD complex), gamma chain |
| RA | 2,961,251 | A→T | 5.7% | L393Q (CTG→CAG) | recC ← | exonuclease V (RecBCD complex), gamma chain |
| RA | 2,962,561 | G→A | 5.3% | N68N (AAC→AAT) ‡ | ppdC ← | putative prepilin peptidase‑dependent protein |
| RA | 2,962,562 | T→C | 5.5% | N68S (AAC→AGC) ‡ | ppdC ← | putative prepilin peptidase‑dependent protein |
| RA | 2,987,103 | C→T | 5.4% | intergenic (+27/‑433) | yqeG → / → yqeH | putative transporter/putative LuxR family transcriptional regulator |
| RA | 2,987,104 | T→A | 5.3% | intergenic (+28/‑432) | yqeG → / → yqeH | putative transporter/putative LuxR family transcriptional regulator |
| RA | 2,987,105 | A→G | 5.1% | intergenic (+29/‑431) | yqeG → / → yqeH | putative transporter/putative LuxR family transcriptional regulator |
| RA | 3,059,703 | A→T | 6.9% | intergenic (‑2/‑50) | yqfE ← / → argP | pseudogene, LysR family/transcriptional regulator for arginine transport and DNA replication genes; replication initiation inhibitor |
| RA | 3,059,704 | A→T | 8.0% | intergenic (‑3/‑49) | yqfE ← / → argP | pseudogene, LysR family/transcriptional regulator for arginine transport and DNA replication genes; replication initiation inhibitor |
| RA | 3,061,817 | G→C | 5.4% | W323S (TGG→TCG) ‡ | scpA → | methylmalonyl‑CoA mutase |
| RA | 3,061,818 | G→C | 5.4% | W323C (TGG→TGC) ‡ | scpA → | methylmalonyl‑CoA mutase |
| RA | 3,180,506 | A→C | 5.7% | E29A (GAG→GCG) | ygiC → | ATP‑Grasp family ATPase |
| RA | 3,183,345:1 | +T | 5.9% | intergenic (+22/+468) | zupT → / ← ribB | zinc transporter/3,4‑dihydroxy‑2‑butanone‑4‑phosphate synthase |
| RA | 3,183,350 | Δ1 bp | 5.8% | intergenic (+27/+463) | zupT → / ← ribB | zinc transporter/3,4‑dihydroxy‑2‑butanone‑4‑phosphate synthase |
| RA | 3,220,673 | G→C | 5.4% | E394Q (GAG→CAG) | patA → | putrescine:2‑oxoglutaric acid aminotransferase, PLP‑dependent |
| RA | 3,234,508 | T→C | 5.2% | intergenic (‑53/+231) | higB ← / ← rlmG | mRNA interferase toxin of the HigB‑HigA toxin‑antitoxin system/23S rRNA m(2)G1835 methyltransferase, SAM‑dependent |
| RA | 3,256,450 | C→T | 6.3% | V68I (GTT→ATT) | yhaM ← | putative L‑serine dehydratase alpha chain |
| RA | 3,288,032 | C→A | 6.7% | intergenic (+22/‑58) | yraH → / → yraI | putative fimbrial‑like adhesin protein/putative periplasmic pilin chaperone |
| RA | 3,288,033 | T→G | 6.6% | intergenic (+23/‑57) | yraH → / → yraI | putative fimbrial‑like adhesin protein/putative periplasmic pilin chaperone |
| RA | 3,309,009 | C→T | 5.5% | intergenic (‑85/+24) | nlpI ← / ← pnp | lipoprotein involved in osmotic sensitivity and filamentation/polynucleotide phosphorylase/polyadenylase |
| RA | 3,309,012 | A→G | 5.5% | intergenic (‑88/+21) | nlpI ← / ← pnp | lipoprotein involved in osmotic sensitivity and filamentation/polynucleotide phosphorylase/polyadenylase |
| RA | 3,439,588 | G→C | 5.1% | intergenic (‑79/+28) | yhdN ← / ← rplQ | DUF1992 family protein/50S ribosomal subunit protein L17 |
| RA | 3,439,589 | G→C | 5.3% | intergenic (‑80/+27) | yhdN ← / ← rplQ | DUF1992 family protein/50S ribosomal subunit protein L17 |
| RA | 3,477,878 | T→A | 10.8% | intergenic (+20/+29) | slyX → / ← slyD | phi X174 lysis protein/FKBP‑type peptidyl prolyl cis‑trans isomerase (rotamase) |
| RA | 3,560,455:1 | +G | 100% | intergenic (‑2/+1) | glpR ← / ← glpR | pseudogene, DNA‑binding transcriptional repressor;regulator; Energy metabolism, carbon: Anaerobic respiration; repressor of the glp operon/pseudogene, DNA‑binding transcriptional repressor;regulator; Energy metabolism, carbon: Anaerobic respiration; repressor of the glp operon |
| RA | 3,636,747 | T→C | 7.6% | T222A (ACC→GCC) | yhiN ← | putative oxidoreductase |
| RA | 3,636,748 | G→A | 7.4% | G221G (GGC→GGT) | yhiN ← | putative oxidoreductase |
| RA | 3,657,599 | T→A | 5.7% | intergenic (+32/+387) | hdeD → / ← arrS | acid‑resistance membrane protein/antisense sRNA ArrS, function unknown |
| RA | 3,657,601 | G→C | 5.7% | intergenic (+34/+385) | hdeD → / ← arrS | acid‑resistance membrane protein/antisense sRNA ArrS, function unknown |
| RA | 3,657,603 | T→A | 6.1% | intergenic (+36/+383) | hdeD → / ← arrS | acid‑resistance membrane protein/antisense sRNA ArrS, function unknown |
| RA | 3,781,051 | C→G | 5.7% | intergenic (+34/‑164) | lldD → / → trmL | L‑lactate dehydrogenase, FMN‑linked/tRNA Leu mC34,mU34 2'‑O‑methyltransferase, SAM‑dependent |
| RA | 3,832,188 | A→T | 6.0% | intergenic (+22/+31) | yicH → / ← yicI | putative inner membrane‑anchored periplasmic AsmA family protein/putative alpha‑glucosidase |
| RA | 3,832,191 | C→G | 5.1% | intergenic (+25/+28) | yicH → / ← yicI | putative inner membrane‑anchored periplasmic AsmA family protein/putative alpha‑glucosidase |
| RA | 3,891,502 | C→G | 6.7% | intergenic (+19/‑113) | tnaB → / → mdtL | tryptophan transporter of low affinity/multidrug efflux system protein |
| RA | 3,891,504 | T→A | 6.7% | intergenic (+21/‑111) | tnaB → / → mdtL | tryptophan transporter of low affinity/multidrug efflux system protein |
| RA | 3,891,506 | C→G | 6.7% | intergenic (+23/‑109) | tnaB → / → mdtL | tryptophan transporter of low affinity/multidrug efflux system protein |
| RA | 3,911,816 | C→T | 5.5% | intergenic (‑291/+23) | pstS ← / ← glmS | phosphate ABC transporter periplasmic binding protein/L‑glutamine:D‑fructose‑6‑phosphate aminotransferase |
| RA | 3,911,819 | T→G | 5.4% | intergenic (‑294/+20) | pstS ← / ← glmS | phosphate ABC transporter periplasmic binding protein/L‑glutamine:D‑fructose‑6‑phosphate aminotransferase |
| RA | 3,911,822 | C→A | 5.3% | intergenic (‑297/+17) | pstS ← / ← glmS | phosphate ABC transporter periplasmic binding protein/L‑glutamine:D‑fructose‑6‑phosphate aminotransferase |
| RA | 3,959,515 | T→A | 6.7% | intergenic (+70/+17) | ilvC → / ← ppiC | ketol‑acid reductoisomerase, NAD(P)‑binding/peptidyl‑prolyl cis‑trans isomerase C (rotamase C) |
| RA | 3,992,624 | T→G | 7.9% | L491R (CTG→CGG) | cyaA → | adenylate cyclase |
| RA | 3,993,145 | C→A | 100% | R665S (CGT→AGT) | cyaA → | adenylate cyclase |
| RA | 4,017,216:1 | +A | 6.2% | intergenic (+24/‑117) | udp → / → rmuC | uridine phosphorylase/DNA recombination protein |
| RA | 4,041,216 | T→C | 8.0% | Q73R (CAG→CGG) ‡ | mobB ← | molybdopterin‑guanine dinucleotide biosynthesis protein B |
| RA | 4,041,217 | G→A | 8.0% | Q73* (CAG→TAG) ‡ | mobB ← | molybdopterin‑guanine dinucleotide biosynthesis protein B |
| RA | 4,041,220 | T→C | 8.0% | S72G (AGC→GGC) | mobB ← | molybdopterin‑guanine dinucleotide biosynthesis protein B |
| RA | 4,041,221 | G→A | 8.0% | A71A (GCC→GCT) | mobB ← | molybdopterin‑guanine dinucleotide biosynthesis protein B |
| RA | 4,049,986 | G→T | 5.5% | noncoding (88/109 nt) | spf → | Spot 42 sRNA antisense regulator of galK translation, Hfq‑dependent |
| RA | 4,049,989 | A→C | 5.4% | noncoding (91/109 nt) | spf → | Spot 42 sRNA antisense regulator of galK translation, Hfq‑dependent |
| RA | 4,060,261 | G→T | 6.9% | intergenic (+31/‑186) | typA → / → yihL | GTP‑binding protein/putative DNA‑binding transcriptional regulator |
| RA | 4,060,264 | A→C | 6.4% | intergenic (+34/‑183) | typA → / → yihL | GTP‑binding protein/putative DNA‑binding transcriptional regulator |
| RA | 4,082,696 | G→C | 8.7% | Q22E (CAG→GAG) | fdoH ← | formate dehydrogenase‑O, Fe‑S subunit |
| RA | 4,117,005 | T→A | 5.5% | D73V (GAT→GTT) | glpK ← | glycerol kinase |
| RA | 4,117,047 | G→T | 93.7% | S59Y (TCC→TAC) | glpK ← | glycerol kinase |
| RA | 4,184,795 | C→T | 50.0% | T1184M (ACG→ATG) | rpoB → | RNA polymerase, beta subunit |
| RA | 4,213,156 | G→A | 6.6% | noncoding (117/120 nt) | rrfE → | 5S ribosomal RNA of rrnE operon |
| RA | 4,272,361 | C→T | 6.0% | G504D (GGC→GAC) | uvrA ← | ATPase and DNA damage recognition protein of nucleotide excision repair excinuclease UvrABC |
| RA | 4,296,060 | C→T | 20.4% | intergenic (+266/+376) | gltP → / ← yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| RA | 4,296,380:1 | +CG | 100% | intergenic (+586/+56) | gltP → / ← yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| RA | 4,362,528 | G→A | 6.7% | intergenic (‑175/+23) | yjdQ ← / ← pheU | pseudogene, P4‑like integrase remnant/tRNA‑Phe |
| RA | 4,362,529 | T→C | 6.0% | intergenic (‑176/+22) | yjdQ ← / ← pheU | pseudogene, P4‑like integrase remnant/tRNA‑Phe |
| RA | 4,439,845 | T→A | 6.5% | intergenic (+52/+27) | ytfK → / ← ytfL | DUF1107 family protein/UPF0053 family inner membrane protein |
| RA | 4,488,424 | G→T | 10.1% | intergenic (+24/+137) | lptG → / ← yjgR | lipopolysaccharide export ABC permease/DUF853 family protein with NTPase fold |
| RA | 4,488,425 | A→T | 9.1% | intergenic (+25/+136) | lptG → / ← yjgR | lipopolysaccharide export ABC permease/DUF853 family protein with NTPase fold |
| RA | 4,488,426 | A→T | 10.0% | intergenic (+26/+135) | lptG → / ← yjgR | lipopolysaccharide export ABC permease/DUF853 family protein with NTPase fold |
| RA | 4,488,427 | A→C | 10.1% | intergenic (+27/+134) | lptG → / ← yjgR | lipopolysaccharide export ABC permease/DUF853 family protein with NTPase fold |
| RA | 4,551,422 | T→A | 6.4% | intergenic (‑126/‑214) | gntP ← / → uxuA | fructuronate transporter/mannonate hydrolase |
| RA | 4,561,587 | G→T | 6.3% | A363A (GCC→GCA) | yjiJ ← | DUF1228 family putative inner membrane MFS superfamily transporter |
| RA | 4,561,590 | A→C | 6.5% | L362L (CTT→CTG) | yjiJ ← | DUF1228 family putative inner membrane MFS superfamily transporter |
| RA | 4,573,188 | G→A | 6.6% | pseudogene (775/1503 nt) | yjiT → | pseudogene |
| RA | 4,573,189 | T→C | 6.9% | pseudogene (776/1503 nt) | yjiT → | pseudogene |
| RA | 4,637,492 | A→T | 5.9% | E266V (GAG→GTG) | creC → | sensory histidine kinase in two‑component regulatory system with CreB or PhoB |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3423760–3424234 | 3424531–3424238 | 5–772 | 26 [22] | [21] 23 | [rrfD]–[rrlD] | [rrfD],[rrlD] |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 225154 = | NA (NA) | 4 (0.050) | 4/254 | NT | NA | noncoding (1384/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon |
| ? | NC_000913 | 225176 = | NA (NA) | noncoding (1406/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon | |||||
| * | ? | NC_000913 | 265229 = | 72 (0.930) | 4 (0.060) | 4/248 | NT | 5.5% | intergenic (‑23/+75) | yafX/ykfF | CP4‑6 prophage; uncharacterized protein/CP4‑6 prophage; uncharacterized protein |
| ? | NC_000913 | 265252 = | 70 (0.960) | intergenic (‑46/+52) | yafX/ykfF | CP4‑6 prophage; uncharacterized protein/CP4‑6 prophage; uncharacterized protein | |||||
| * | ? | NC_000913 | = 265236 | 73 (0.950) | 7 (0.100) | 7/248 | NT | 9.2% | intergenic (‑30/+68) | yafX/ykfF | CP4‑6 prophage; uncharacterized protein/CP4‑6 prophage; uncharacterized protein |
| ? | NC_000913 | = 265243 | 70 (0.960) | intergenic (‑37/+61) | yafX/ykfF | CP4‑6 prophage; uncharacterized protein/CP4‑6 prophage; uncharacterized protein | |||||
| * | ? | NC_000913 | = 265251 | 72 (0.930) | 7 (0.100) | 5/248 | NT | 8.5% | intergenic (‑45/+53) | yafX/ykfF | CP4‑6 prophage; uncharacterized protein/CP4‑6 prophage; uncharacterized protein |
| ? | NC_000913 | 2775896 = | 84 (1.160) | intergenic (+80/‑23) | ypjI/yfjX | pseudogene, CP4‑57 putative prophage remnant;Phage or Prophage Related/CP4‑57 prophage; putative antirestriction protein | |||||
| * | ? | NC_000913 | = 274681 | NA (NA) | 4 (0.060) | 4/248 | NT | NA | noncoding (469/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | = 274762 | NA (NA) | noncoding (388/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | = 383697 | 74 (0.960) | 4 (0.060) | 3/246 | NT | 5.1% | coding (239/1197 nt) | yaiP | putative family 2 glycosyltransferase |
| ? | NC_000913 | = 383743 | 79 (1.100) | coding (193/1197 nt) | yaiP | putative family 2 glycosyltransferase | |||||
| * | ? | NC_000913 | = 497010 | NA (NA) | 4 (0.060) | 4/238 | NT | NA | noncoding (10/26 nt) | REP44 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP44 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | NC_000913 | = 497016 | NA (NA) | noncoding (16/26 nt) | REP44 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP44 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
| * | ? | NC_000913 | = 609350 | NA (NA) | 5 (0.070) | 5/260 | NT | 7.0% | noncoding (1344/1345 nt) | IS186 | repeat region |
| ? | NC_000913 | 1879829 = | 66 (0.870) | coding (120/360 nt) | yeaR | DUF1971 family protein, nitrate‑inducible | |||||
| * | ? | NC_000913 | 648718 = | 63 (0.820) | 5 (0.070) | 5/256 | NT | 7.6% | coding (854/1533 nt) | citF | citrate lyase, citrate‑ACP transferase (alpha) subunit |
| ? | NC_000913 | 648741 = | 61 (0.810) | coding (831/1533 nt) | citF | citrate lyase, citrate‑ACP transferase (alpha) subunit | |||||
| * | ? | NC_000913 | 911989 = | 71 (0.920) | 5 (0.070) | 5/254 | NT | 7.2% | coding (162/969 nt) | hcr | HCP oxidoreductase, NADH‑dependent |
| ? | NC_000913 | 912003 = | 61 (0.820) | coding (148/969 nt) | hcr | HCP oxidoreductase, NADH‑dependent | |||||
| * | ? | NC_000913 | 1070920 = | 56 (0.720) | 4 (0.050) | 4/254 | NT | 6.7% | coding (36/591 nt) | rutE | putative malonic semialdehyde reductase |
| ? | NC_000913 | 1070935 = | 58 (0.780) | coding (21/591 nt) | rutE | putative malonic semialdehyde reductase | |||||
| * | ? | NC_000913 | = 1100826 | NA (NA) | 4 (0.050) | 4/252 | NT | NA | noncoding (6/19 nt) | REP96 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP96 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | NC_000913 | = 1100833 | NA (NA) | noncoding (13/19 nt) | REP96 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP96 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
| * | ? | NC_000913 | 1165696 = | NA (NA) | 3 (0.040) | 3/242 | NT | NA | intergenic (+11/‑389) | ycfP/ndh | putative UPF0227 family esterase/respiratory NADH dehydrogenase 2/cupric reductase |
| ? | NC_000913 | 1165728 = | NA (NA) | intergenic (+43/‑357) | ycfP/ndh | putative UPF0227 family esterase/respiratory NADH dehydrogenase 2/cupric reductase | |||||
| * | ? | NC_000913 | 1207790 = | 30 (0.390) | 19 (0.280) | 17/232 | NT | 43.5% | coding (290/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | 1209619 = | 23 (0.340) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | = 1207805 | 27 (0.350) | 27 (0.400) | 25/232 | NT | 53.6% | coding (305/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | = 1209602 | 23 (0.340) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | = 1299498 | 0 (0.000) | 73 (0.970) | 57/256 | NT | 100% | intergenic (+253/‑1684) | ychE/oppA | UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein |
| ? | NC_000913 | 1300698 = | 0 (0.000) | intergenic (+1453/‑484) | ychE/oppA | UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein | |||||
| * | ? | NC_000913 | 1343551 = | 71 (0.920) | 5 (0.070) | 5/240 | NT | 7.2% | intergenic (‑223/+46) | osmB/yciT | osmotically and stress inducible lipoprotein/global regulator of transcription; DeoR family |
| ? | NC_000913 | 1343581 = | 64 (0.910) | intergenic (‑253/+16) | osmB/yciT | osmotically and stress inducible lipoprotein/global regulator of transcription; DeoR family | |||||
| * | ? | NC_000913 | = 1387834 | 49 (0.630) | 5 (0.070) | 5/258 | NT | 9.6% | coding (1115/1542 nt) | tyrR | aromatic amino acid biosynthesis and transport regulon transcriptional regulator; autorepressor; ATPase; phosphatase |
| ? | NC_000913 | = 1387848 | 46 (0.610) | coding (1129/1542 nt) | tyrR | aromatic amino acid biosynthesis and transport regulon transcriptional regulator; autorepressor; ATPase; phosphatase | |||||
| * | ? | NC_000913 | 1530096 = | 36 (0.470) | 3 (0.040) | 3/248 | NT | 8.2% | coding (175/483 nt) | ydcD | putative immunity protein for RhsE |
| ? | NC_000913 | 1530130 = | 33 (0.450) | coding (209/483 nt) | ydcD | putative immunity protein for RhsE | |||||
| * | ? | NC_000913 | 1539119 = | 46 (0.600) | 3 (0.040) | 3/252 | NT | 6.3% | coding (3472/3741 nt) | narZ | nitrate reductase 2 (NRZ), alpha subunit |
| ? | NC_000913 | 1539157 = | 46 (0.620) | coding (3434/3741 nt) | narZ | nitrate reductase 2 (NRZ), alpha subunit | |||||
| * | ? | NC_000913 | = 1553950 | 58 (0.750) | 3 (0.040) | 3/246 | NT | 5.2% | intergenic (‑112/+22) | adhP/maeA | ethanol‑active dehydrogenase/acetaldehyde‑active reductase/malate dehydrogenase, decarboxylating, NAD‑requiring; malic enzyme |
| ? | NC_000913 | = 1553956 | 55 (0.760) | intergenic (‑118/+16) | adhP/maeA | ethanol‑active dehydrogenase/acetaldehyde‑active reductase/malate dehydrogenase, decarboxylating, NAD‑requiring; malic enzyme | |||||
| * | ? | NC_000913 | 1672789 = | 46 (0.600) | 5 (0.070) | 4/244 | NT | 11.4% | intergenic (+8/+31) | ydgD/mdtI | putative peptidase/multidrug efflux system transporter |
| ? | NC_000913 | 1672815 = | 35 (0.490) | intergenic (+34/+5) | ydgD/mdtI | putative peptidase/multidrug efflux system transporter | |||||
| * | ? | NC_000913 | = 1717325 | 56 (0.720) | 3 (0.040) | 3/246 | NT | 6.5% | intergenic (‑103/+26) | tyrS/pdxH | tyrosyl‑tRNA synthetase/pyridoxine 5'‑phosphate oxidase |
| ? | NC_000913 | = 1717390 | 34 (0.470) | coding (618/657 nt) | pdxH | pyridoxine 5'‑phosphate oxidase | |||||
| * | ? | NC_000913 | 1786798 = | 36 (0.470) | 5 (0.070) | 5/250 | NT | 13.0% | coding (315/2379 nt) | ppsA | phosphoenolpyruvate synthase |
| ? | NC_000913 | 1786816 = | 33 (0.450) | coding (297/2379 nt) | ppsA | phosphoenolpyruvate synthase | |||||
| * | ? | NC_000913 | 1813391 = | 60 (0.780) | 3 (0.040) | 3/250 | NT | 5.2% | intergenic (‑259/+30) | ydjO/cedA | uncharacterized protein/cell division modulator |
| ? | NC_000913 | 1813410 = | 53 (0.720) | intergenic (‑278/+11) | ydjO/cedA | uncharacterized protein/cell division modulator | |||||
| * | ? | NC_000913 | = 1920160 | 58 (0.750) | 4 (0.060) | 4/246 | NT | 6.8% | intergenic (+17/‑63) | yebT/rsmF | MCE domain protein/16S rRNA m(5)C1407 methyltransferase, SAM‑dependent |
| ? | NC_000913 | = 1920166 | 55 (0.760) | intergenic (+23/‑57) | yebT/rsmF | MCE domain protein/16S rRNA m(5)C1407 methyltransferase, SAM‑dependent | |||||
| * | ? | NC_000913 | 1948662 = | 61 (0.790) | 4 (0.050) | 4/252 | NT | 6.3% | intergenic (‑30/+88) | nudB/aspS | dihydroneopterin triphosphate pyrophosphatase/aspartyl‑tRNA synthetase |
| ? | NC_000913 | 1948694 = | 60 (0.810) | intergenic (‑62/+56) | nudB/aspS | dihydroneopterin triphosphate pyrophosphatase/aspartyl‑tRNA synthetase | |||||
| * | ? | NC_000913 | 1971453 = | 48 (0.620) | 4 (0.060) | 4/248 | NT | 7.9% | coding (1239/1662 nt) | tar | methyl‑accepting chemotaxis protein II |
| ? | NC_000913 | 1971514 = | 48 (0.660) | coding (1178/1662 nt) | tar | methyl‑accepting chemotaxis protein II | |||||
| * | ? | NC_000913 | = 2117671 | 61 (0.790) | 3 (0.040) | 3/248 | NT | 5.0% | coding (734/1281 nt) | wcaK | colanic acid biosynthesis protein |
| ? | NC_000913 | = 2117693 | 56 (0.770) | coding (712/1281 nt) | wcaK | colanic acid biosynthesis protein | |||||
| * | ? | NC_000913 | = 2252869 | NA (NA) | 4 (0.050) | 3/250 | NT | NA | noncoding (74/91 nt) | RIP157 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP157 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
| ? | NC_000913 | = 2252879 | NA (NA) | noncoding (84/91 nt) | RIP157 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP157 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | |||||
| * | ? | NC_000913 | 2543796 = | 69 (0.890) | 4 (0.050) | 4/250 | NT | 6.0% | intergenic (‑268/+36) | cysP/ucpA | thiosulfate‑binding protein/furfural resistance protein, putative short‑chain oxidoreductase |
| ? | NC_000913 | 2543820 = | 59 (0.810) | intergenic (‑292/+12) | cysP/ucpA | thiosulfate‑binding protein/furfural resistance protein, putative short‑chain oxidoreductase | |||||
| * | ? | NC_000913 | 2590715 = | 68 (0.880) | 4 (0.060) | 3/240 | NT | 6.0% | intergenic (+7/+92) | acrD/ypfM | aminoglycoside/multidrug efflux system/stress‑induced small enterobacterial protein |
| ? | NC_000913 | 2590747 = | 64 (0.910) | intergenic (+39/+60) | acrD/ypfM | aminoglycoside/multidrug efflux system/stress‑induced small enterobacterial protein | |||||
| * | ? | NC_000913 | = 2613393 | 58 (0.750) | 5 (0.070) | 3/250 | NT | 8.1% | coding (1494/2013 nt) | hyfR | hydrogenase‑4 transcriptional activator |
| ? | NC_000913 | = 2613403 | 58 (0.790) | coding (1504/2013 nt) | hyfR | hydrogenase‑4 transcriptional activator | |||||
| * | ? | NC_000913 | 2635831 = | 81 (1.050) | 6 (0.090) | 5/238 | NT | 7.7% | intergenic (‑17/+53) | yfgJ/der | DUF1407 family protein/GTPase; multicopy suppressor of ftsJ |
| ? | NC_000913 | 2635863 = | 70 (1.010) | intergenic (‑49/+21) | yfgJ/der | DUF1407 family protein/GTPase; multicopy suppressor of ftsJ | |||||
| * | ? | NC_000913 | 2894838 = | NA (NA) | 5 (0.070) | 4/250 | NT | 5.2% | noncoding (31/67 nt) | REP201 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP201 (repetitive extragenic palindromic) element; contains 2 REP sequences |
| ? | NC_000913 | = 4229379 | 91 (1.240) | noncoding (4/70 nt) | REP312 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP312 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
| * | ? | NC_000913 | = 3194840 | 76 (0.980) | 5 (0.070) | 4/254 | NT | 6.3% | noncoding (26/143 nt) | sibD | sRNA antisense regulator of toxic IbsD protein |
| ? | NC_000913 | = 3194852 | 76 (1.020) | noncoding (14/143 nt) | sibD | sRNA antisense regulator of toxic IbsD protein | |||||
| * | ? | NC_000913 | = 3222473 | 68 (0.880) | 4 (0.060) | 4/238 | NT | 6.0% | intergenic (+24/‑160) | ebgR/ebgA | transcriptional repressor/evolved beta‑D‑galactosidase, alpha subunit |
| ? | NC_000913 | = 3222479 | 64 (0.920) | intergenic (+30/‑154) | ebgR/ebgA | transcriptional repressor/evolved beta‑D‑galactosidase, alpha subunit | |||||
| * | ? | NC_000913 | 3225107 = | 51 (0.660) | 5 (0.070) | 5/254 | NT | 9.1% | coding (2475/3093 nt) | ebgA | evolved beta‑D‑galactosidase, alpha subunit |
| ? | NC_000913 | 3225132 = | 51 (0.690) | coding (2500/3093 nt) | ebgA | evolved beta‑D‑galactosidase, alpha subunit | |||||
| * | ? | NC_000913 | = 3252144 | NA (NA) | 3 (0.040) | 3/252 | NT | NA | noncoding (80/98 nt) | RIP234 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP234 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
| ? | NC_000913 | = 3252155 | NA (NA) | noncoding (91/98 nt) | RIP234 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP234 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | |||||
| * | ? | NC_000913 | 3311373 = | 82 (1.060) | 8 (0.110) | 6/248 | NT | 9.6% | noncoding (149/174 nt) | psrO | novel sRNA, function unknown |
| ? | NC_000913 | 3311399 = | 74 (1.020) | intergenic (+1/+16) | psrO/rpsO | novel sRNA, function unknown/30S ribosomal subunit protein S15 | |||||
| * | ? | NC_000913 | 3423376 = | 72 (0.930) | 9 (0.120) | 5/260 | NT | 10.4% | intergenic (+182/+47) | yhdZ/rrfF | putative amino acid ABC transporter ATPase/5S ribosomal RNA of rrnD operon |
| ? | NC_000913 | = 4213162 | 85 (1.120) | intergenic (+3/‑72) | rrfE/yjaA | 5S ribosomal RNA of rrnE operon/stress‑induced protein | |||||
| * | ? | NC_000913 | 3470277 = | NA (NA) | 3 (0.040) | 3/250 | NT | NA | coding (1053/1185 nt) | tufA | translation elongation factor EF‑Tu 1 |
| ? | NC_000913 | 3470311 = | NA (NA) | coding (1019/1185 nt) | tufA | translation elongation factor EF‑Tu 1 | |||||
| * | ? | NC_000913 | = 3538406 | 65 (0.840) | 4 (0.050) | 4/250 | NT | 5.7% | coding (1022/2322 nt) | yhgF | putative transcriptional accessory protein |
| ? | NC_000913 | = 3538453 | 70 (0.960) | coding (1069/2322 nt) | yhgF | putative transcriptional accessory protein | |||||
| * | ? | NC_000913 | = 3573634 | 81 (1.050) | 5 (0.070) | 5/254 | NT | 5.8% | intergenic (‑132/+141) | glgB/asd | 1,4‑alpha‑glucan branching enzyme/aspartate‑semialdehyde dehydrogenase, NAD(P)‑binding |
| ? | NC_000913 | = 3573650 | 84 (1.130) | intergenic (‑148/+125) | glgB/asd | 1,4‑alpha‑glucan branching enzyme/aspartate‑semialdehyde dehydrogenase, NAD(P)‑binding | |||||
| * | ? | NC_000913 | 3587430 = | 92 (1.190) | 5 (0.070) | 4/244 | NT | 5.4% | coding (684/744 nt) | ugpQ | glycerophosphodiester phosphodiesterase, cytosolic |
| ? | NC_000913 | 3587464 = | 90 (1.260) | coding (650/744 nt) | ugpQ | glycerophosphodiester phosphodiesterase, cytosolic | |||||
| * | ? | NC_000913 | 3721045 = | 123 (1.590) | 195 (2.540) | 109/262 | NT | 64.2% | noncoding (413/1443 nt) | IS150 | repeat region |
| ? | NC_000913 | = 3839774 | 95 (1.240) | coding (220/819 nt) | nlpA | cytoplasmic membrane lipoprotein‑28 | |||||
| * | ? | NC_000913 | 3743826 = | 267 (3.460) | 14 (0.190) | 5/250 | NT | 5.4% | coding (84/468 nt) | yiaL | DUF386 family protein |
| ? | NC_000913 | 3743864 = | 233 (3.190) | coding (122/468 nt) | yiaL | DUF386 family protein | |||||
| * | ? | NC_000913 | = 3876096 | 98 (1.270) | 5 (0.070) | 5/254 | NT | 5.1% | intergenic (+2/+44) | yidX/yidA | putative lipoprotein/sugar phosphate phosphatase |
| ? | NC_000913 | = 3876137 | 90 (1.210) | intergenic (+43/+3) | yidX/yidA | putative lipoprotein/sugar phosphate phosphatase | |||||
| * | ? | NC_000913 | 4029696 = | 64 (0.830) | 5 (0.070) | 5/250 | NT | 7.6% | coding (1276/2190 nt) | fadB | fused 3‑hydroxybutyryl‑CoA epimerase/delta(3)‑cis‑delta(2)‑trans‑enoyl‑CoA isomerase/enoyl‑CoA hydratase/3‑hydroxyacyl‑CoA dehydrogenase |
| ? | NC_000913 | 4029719 = | 61 (0.830) | coding (1253/2190 nt) | fadB | fused 3‑hydroxybutyryl‑CoA epimerase/delta(3)‑cis‑delta(2)‑trans‑enoyl‑CoA isomerase/enoyl‑CoA hydratase/3‑hydroxyacyl‑CoA dehydrogenase | |||||
| * | ? | NC_000913 | 4168332 = | 48 (0.620) | 4 (0.060) | 4/244 | NT | 9.6% | intergenic (+132/‑40) | rrsB/gltT | 16S ribosomal RNA of rrnB operon/tRNA‑Glu |
| ? | NC_000913 | 4168374 = | 31 (0.430) | noncoding (3/76 nt) | gltT | tRNA‑Glu | |||||
| * | ? | NC_000913 | = 4168341 | 42 (0.540) | 5 (0.070) | 3/244 | NT | 12.5% | intergenic (+141/‑31) | rrsB/gltT | 16S ribosomal RNA of rrnB operon/tRNA‑Glu |
| ? | NC_000913 | = 4168363 | 31 (0.430) | intergenic (+163/‑9) | rrsB/gltT | 16S ribosomal RNA of rrnB operon/tRNA‑Glu | |||||
| * | ? | NC_000913 | 4263218 = | 123 (1.590) | 9 (0.130) | 4/246 | NT | 7.9% | intergenic (+136/+30) | pspG/qorA | phage shock protein G/quinone oxidoreductase, NADPH‑dependent |
| ? | NC_000913 | 4263241 = | 96 (1.330) | intergenic (+159/+7) | pspG/qorA | phage shock protein G/quinone oxidoreductase, NADPH‑dependent | |||||
| * | ? | NC_000913 | 4290086 = | 64 (0.830) | 4 (0.050) | 3/256 | NT | 5.9% | coding (279/672 nt) | nrfC | formate‑dependent nitrite reductase, 4Fe4S subunit |
| ? | NC_000913 | 4290108 = | 65 (0.870) | coding (301/672 nt) | nrfC | formate‑dependent nitrite reductase, 4Fe4S subunit | |||||
| * | ? | NC_000913 | = 4325937 | 84 (1.090) | 6 (0.080) | 4/250 | NT | 7.2% | noncoding (136/583 nt) | REP325 (repetitive extragenic palindromic) element; contains 12 REP sequences | REP325 (repetitive extragenic palindromic) element; contains 12 REP sequences |
| ? | NC_000913 | = 4326005 | 75 (1.030) | noncoding (204/583 nt) | REP325 (repetitive extragenic palindromic) element; contains 12 REP sequences | REP325 (repetitive extragenic palindromic) element; contains 12 REP sequences | |||||
| * | ? | NC_000913 | 4403249 = | 96 (1.240) | 6 (0.080) | 6/256 | NT | 6.0% | coding (1212/1260 nt) | hflK | modulator for HflB protease specific for phage lambda cII repressor |
| ? | NC_000913 | 4403271 = | 94 (1.250) | coding (1234/1260 nt) | hflK | modulator for HflB protease specific for phage lambda cII repressor | |||||