mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | BS168_reference_genome | 23,520 | Δ1 bp | 6.2% | coding (250/624 nt) | dgk ← | deoxyguanosine kinase |
| RA | BS168_reference_genome | 56,607 | G→A | 9.5% | A86T (GCA→ACA) | glmU → | bifunctional glucosamine‑1‑phosphate N‑acetyltransferase/UDP‑N‑acetylglucosamine pyrophosphorylase |
| RA | BS168_reference_genome | 77,835 | A→G | 6.7% | L284L (CTA→CTG) | ftsH → | ATP‑dependent cytoplasmic membrane protease |
| RA | BS168_reference_genome | 89,128 | T→A | 5.7% | V134V (GTT→GTA) | lysS → | lysyl‑tRNA synthetase |
| RA | BS168_reference_genome | 96,240 | G→A | 7.6% | intergenic (+19/‑152) | trnJ‑Ala → / → rrnW‑16S | tRNA‑Ala/ribosomal RNA‑16S |
| RA | BS168_reference_genome | 143,659 | C→T | 100% | S100F (TCT→TTT) | rpsE → | ribosomal protein S5 |
| RA | BS168_reference_genome | 165,749 | Δ1 bp | 100% | intergenic (+42/‑5) | rrnI‑5S → / → trnI‑Asn | ribosomal RNA‑5S/tRNA‑Asn |
| RA | BS168_reference_genome | 165,751 | Δ1 bp | 100% | intergenic (+44/‑3) | rrnI‑5S → / → trnI‑Asn | ribosomal RNA‑5S/tRNA‑Asn |
| RA | BS168_reference_genome | 165,825:1 | +C | 100% | noncoding (72/72 nt) | trnI‑Asn → | tRNA‑Asn |
| RA | BS168_reference_genome | 166,037:1 | +T | 100% | intergenic (+4/‑27) | trnI‑Gly → / → trnI‑Arg | tRNA‑Gly/tRNA‑Arg |
| RA | BS168_reference_genome | 166,344 | Δ1 bp | 100% | intergenic (+16/‑156) | trnI‑Ala → / → rrnH‑16S | tRNA‑Ala/ribosomal RNA‑16S |
| RA | BS168_reference_genome | 182,667 | A→T | 8.0% | D219E (GAT→GAA) | feuA ← | ferri‑bacillibactin‑binding lipoprotein |
| RA | BS168_reference_genome | 233,974 | T→C | 7.5% | intergenic (‑79/+20) | glpQA ← / ← glpT | secreted glycerophosphoryl diester phosphodiesterase/sn‑glycerol‑3‑phosphate permease |
| RA | BS168_reference_genome | 335,553 | T→A | 8.3% | L75L (CTT→CTA) | ycgG → | conserved protein of unknown function (similar to phage protein) |
| RA | BS168_reference_genome | 376,018 | Δ1 bp | 100% | intergenic (‑220/‑14) | hxlA ← / → hxlR | 3‑hexulose‑6‑phosphate synthase (HPS)/positive regulator of hxlAB expression (formaldehyde sensing) |
| RA | BS168_reference_genome | 378,514 | T→G | 16.0% | V516G (GTT→GGT) | srfAA → | surfactin synthetase |
| RA | BS168_reference_genome | 557,865:1 | +T | 100% | intergenic (+416/‑8) | yddT → / → ydzN | putative exported phage protein/hypothetical protein |
| RA | BS168_reference_genome | 608,164 | C→A | 29.5% | intergenic (‑89/+82) | ydgF ← / ← dinB | putative amino acid permease/nuclease inhibitor |
| RA | BS168_reference_genome | 608,185 | G→T | 43.1% | intergenic (‑110/+61) | ydgF ← / ← dinB | putative amino acid permease/nuclease inhibitor |
| RA | BS168_reference_genome | 682,074 | C→T | 8.3% | A97T (GCT→ACT) | ydjP ← | putative aminoacrylate hydrolase |
| RA | BS168_reference_genome | 770,241 | G→T | 7.7% | R3M (AGG→ATG) | rhgW → | rhamnogalacturonan endolyase |
| RA | BS168_reference_genome | 771,300 | C→T | 100% | A356V (GCG→GTG) | rhgW → | rhamnogalacturonan endolyase |
| RA | BS168_reference_genome | 892,022 | A→T | 100% | N196I (AAT→ATT) | malR → | transcriptional activator of the Mal operon |
| RA | BS168_reference_genome | 961,032:1 | +A | 100% | intergenic (‑46/‑362) | katA ← / → ssuB | vegetative catalase 1/aliphatic sulfonate ABC transporter (ATP‑binding protein) |
| RA | BS168_reference_genome | 1,012,003 | G→T | 7.3% | A419E (GCA→GAA) | lytF ← | gamma‑D‑glutamate‑meso‑diaminopimelate muropeptidase (major autolysin, vegetative) |
| RA | BS168_reference_genome | 1,023,150 | C→A | 34.8% | intergenic (+50/‑200) | yhdF → / → bcaP | putative NAD(P)‑dependent dehydrogenase/branched‑chain amino acid transporter or methylthioribose‑degradation metabolite exporter |
| RA | BS168_reference_genome | 1,029,038 | T→G | 25.1% | T184P (ACC→CCC) | asiMA ← | negative regulator of the activity of sigma‑M |
| RA | BS168_reference_genome | 1,042,924 | C→T | 10.3% | S441S (TCG→TCA) | nhaC ← | Na+/H+ antiporter |
| RA | BS168_reference_genome | 1,126,886 | G→A | 9.1% | F189F (TTC→TTT) | ntdC ← | biosynthesis of neotrehalosadiamine (3,3'‑diamino‑3,3'‑dideoxy‑alpha,beta‑trehalose), glucose‑6‑P 3‑dehydrogenase; kanosamine biosynthesis (recent HGT island) |
| RA | BS168_reference_genome | 1,224,521 | A→G | 100% | E356G (GAA→GGA) | oppD → | oligopeptide ABC transporter (ATP‑binding protein) |
| RA | BS168_reference_genome | 1,306,435 | A→G | 8.7% | H317R (CAT→CGT) | uxuA → | D‑mannonate dehydratase |
| RA | BS168_reference_genome | 1,317,152:1 | +G | 88.7% | intergenic (+23/+5) | phrA → / ← yjpA | secreted inhibitor of the activity of phosphatase RapA (quorum sensing)/putative enzyme |
| RA | BS168_reference_genome | 1,317,152:2 | +T | 84.4% | intergenic (+23/+5) | phrA → / ← yjpA | secreted inhibitor of the activity of phosphatase RapA (quorum sensing)/putative enzyme |
| RA | BS168_reference_genome | 1,317,153:1 | +T | 100% | intergenic (+24/+4) | phrA → / ← yjpA | secreted inhibitor of the activity of phosphatase RapA (quorum sensing)/putative enzyme |
| RA | BS168_reference_genome | 1,320,221 | G→C | 8.4% | A178P (GCA→CCA) | xpdC → | phage PBSX; manganese‑containing peroxidase |
| RA | BS168_reference_genome | 1,323,881 | C→T | 100% | P27L (CCG→CTG) | xkdD → | phage PBSX; conserved hypothetical protein |
| RA | BS168_reference_genome | 1,474,890 | C→T | 100% | L45L (TTG→TTA) | kre ← | regulator of transcription factor ComK function via modulation of mRNA stability |
| RA | BS168_reference_genome | 1,498,659 | T→C | 7.3% | V72A (GTA→GCA) | mobB → | molybdopterin‑guanine dinucleotide biosynthesis protein B |
| RA | BS168_reference_genome | 1,511,930 | G→T | 32.9% | S88* (TCA→TAA) | ykoA ← | putative membrane protein of unknown function |
| RA | BS168_reference_genome | 1,527,317 | G→A | 8.0% | Q29Q (CAG→CAA) | ykyA → | putative lipoprotein |
| RA | BS168_reference_genome | 1,542,428 | G→T | 11.5% | L181L (CTG→CTT) | ylaA → | conserved protein of unknown function |
| RA | BS168_reference_genome | 1,561,301 | C→T | 8.3% | P279L (CCG→CTG) | ctaC → | cytochrome caa3 oxidase (subunit II) |
| RA | BS168_reference_genome | 1,565,793 | G→T | 16.2% | intergenic (‑84/‑56) | ylbA ← / → ylbB | conserved hypothetical protein/putative enzyme |
| RA | BS168_reference_genome | 1,614,239 | A→T | 6.2% | I295F (ATT→TTT) | ileS → | isoleucyl‑tRNA synthetase |
| RA | BS168_reference_genome | 1,616,570 | C→A | 15.5% | Q102K (CAA→AAA) | ylyA → | sporulation‑related RNA polymerase‑binding factor |
| RA | BS168_reference_genome | 1,690,759 | G→A | 100% | R214H (CGT→CAT) | codY → | transcriptional regulator, GTP and BCAA‑dependent |
| RA | BS168_reference_genome | 1,999,145 | A→T | 30.1% | I224K (ATA→AAA) | dacC ← | D‑alanyl‑D‑alanine carboxypeptidase |
| RA | BS168_reference_genome | 2,048,992 | A→G | 9.9% | I154V (ATC→GTC) | penP → | beta‑lactamase precursor (putative hydrolase) |
| RA | BS168_reference_genome | 2,067,071 | A→T | 7.0% | F653L (TTT→TTA) | yobI ← | putative phage repair NTPase with transmembrane helices; putative defective prophage 6 |
| RA | BS168_reference_genome | 2,097,080:1 | +A | 100% | intergenic (‑104/+46) | azoJ ← / ← yocK | FMN‑dependent NADH‑azoreductase/putative general stress protein |
| RA | BS168_reference_genome | 2,165,244 | A→T | 8.3% | V124E (GTG→GAG) | nrdEB ← | SPbeta phage ribonucleoside reductase alpha (large) subunit |
| RA | BS168_reference_genome | 2,190,712 | A→T | 6.6% | V25D (GTC→GAC) | pghZ ← | gamma‑polyglutamate hydrolase; phage SPbeta |
| RA | BS168_reference_genome | 2,198,642 | C→T | 10.5% | A42T (GCT→ACT) | yoqH ← | conserved hypothetical protein; phage SPbeta |
| RA | BS168_reference_genome | 2,271,424 | T→C | 100% | R78R (AGA→AGG) | uvrX ← | lesion bypass phage DNA polymerase; phage SPbeta |
| RA | BS168_reference_genome | 2,271,505 | C→T | 100% | V51V (GTG→GTA) | uvrX ← | lesion bypass phage DNA polymerase; phage SPbeta |
| RA | BS168_reference_genome | 2,271,523 | A→C | 100% | D45E (GAT→GAG) | uvrX ← | lesion bypass phage DNA polymerase; phage SPbeta |
| RA | BS168_reference_genome | 2,298,184 | C→A | 9.0% | G112C (GGT→TGT) | ypjQ ← | putative phosphatidylglycerophosphatase |
| RA | BS168_reference_genome | 2,308,345 | C→T | 9.4% | intergenic (‑6/‑150) | degR ← / → ypzA | activator of degradative enzymes (aprE, nprE, sacB) production or activity/putative spore coat protein |
| RA | BS168_reference_genome | 2,323,088 | G→A | 9.5% | A171V (GCC→GTC) | kdgA ← | 2‑keto‑3‑deoxygluconate‑6‑phosphate aldolase |
| RA | BS168_reference_genome | 2,332,900 | T→A | 7.9% | T38S (ACA→TCA) | cotD ← | spore coat protein (inner) |
| RA | BS168_reference_genome | 2,345,064 | C→T | 6.1% | G117G (GGG→GGA) | nth ← | endonuclease III, apurinic apyrimidic DNA lyase |
| RA | BS168_reference_genome | 2,366,434 | C→T | 5.5% | P395P (CCG→CCA) | ypiA ← | conserved protein of unknown function |
| RA | BS168_reference_genome | 2,387,878:1 | +A | 100% | coding (711/735 nt) | yphF ← | putative lipoprotein of unknown function |
| RA | BS168_reference_genome | 2,408,513 | T→G | 25.4% | K317N (AAA→AAC) | gmmB ← | subunit of the platform for genome maintenance machinery |
| RA | BS168_reference_genome | 2,418,340 | T→C | 7.8% | I274V (ATC→GTC) | resC ← | factor required for cytochrome c synthesis |
| RA | BS168_reference_genome | 2,439,190 | C→T | 6.6% | E222K (GAG→AAG) | spoVAF ← | stage V sporulation protein AF |
| RA | BS168_reference_genome | 2,480,646 | 2 bp→AT | 100% | intergenic (+21/+103) | zwf → / ← gndA | glucose‑6‑phosphate 1‑dehydrogenase (NADP‑dependent)/NADP+‑dependent 6‑P‑gluconate dehydrogenase |
| RA | BS168_reference_genome | 2,480,654 | Δ1 bp | 100% | intergenic (+29/+96) | zwf → / ← gndA | glucose‑6‑phosphate 1‑dehydrogenase (NADP‑dependent)/NADP+‑dependent 6‑P‑gluconate dehydrogenase |
| RA | BS168_reference_genome | 2,480,667 | Δ1 bp | 100% | intergenic (+42/+83) | zwf → / ← gndA | glucose‑6‑phosphate 1‑dehydrogenase (NADP‑dependent)/NADP+‑dependent 6‑P‑gluconate dehydrogenase |
| RA | BS168_reference_genome | 2,497,144 | T→A | 7.0% | T309T (ACA→ACT) | bkdB ← | branched‑chain alpha‑keto acid dehydrogenase E2 subunit (lipoamide acyltransferase) |
| RA | BS168_reference_genome | 2,575,387 | A→G | 7.2% | C112R (TGC→CGC) | yqgM ← | putative glycosyltransferase |
| RA | BS168_reference_genome | 2,581,726:1 | +T | 100% | intergenic (‑109/+45) | pstS ← / ← pbpA | phosphate ABC transporter (phosphate binding lipoprotein)/transpeptidase (penicillin‑binding protein 2A) |
| RA | BS168_reference_genome | 2,652,544 | T→G | 13.1% | D85A (GAC→GCC) | nucB ← | sporulation‑specific matrix degrading exported DNase |
| RA | BS168_reference_genome | 2,805,209 | G→A | 21.4% | G185S (GGC→AGC) | glnP → | glutamine ABC transporter (permease) |
| RA | BS168_reference_genome | 2,820,393 | G→A | 6.6% | A28V (GCA→GTA) | dtd ← | gly‑tRNA(Ala) deacylase / D‑Tyr‑tRNATyr deacylase |
| RA | BS168_reference_genome | 2,865,943 | A→T | 8.2% | F221Y (TTC→TAC) | folC ← | folyl‑polyglutamate synthase |
| RA | BS168_reference_genome | 2,910,929 | A→G | 6.4% | intergenic (‑183/+187) | lysCA ← / ← uvrC | aspartokinase II alpha subunit (aa 1‑>408)/excinuclease ABC (subunit C) |
| RA | BS168_reference_genome | 3,019,150 | C→T | 8.2% | Q103Q (CAG→CAA) | ytfI ← | conserved sporulation‑related protein |
| RA | BS168_reference_genome | 3,019,221 | T→C | 8.8% | S80G (AGC→GGC) | ytfI ← | conserved sporulation‑related protein |
| RA | BS168_reference_genome | 3,099,285 | T→C | 7.1% | S55P (TCA→CCA) | msmF → | carbohydrate ABC transporter (permease) |
| RA | BS168_reference_genome | 3,139,266 | T→C | 79.0% | intergenic (‑40/‑165) | rpmEB ← / → ythA | ribosomal protein L31/putative cytochrome bd menaquinol oxidase subunit I |
| RA | BS168_reference_genome | 3,290,436 | G→A | 7.4% | T350T (ACC→ACT) | dhbC ← | isochorismate synthase (siderophore‑specific) |
| JC | BS168_reference_genome | 3,383,490 | (ATTATAATT)2→1 | 15.0% | intergenic (+15/‑67) | yusZ → / → mrgA | putative short‑chain acyl dehydrogenase/metalloregulation DNA‑binding stress protein |
| RA | BS168_reference_genome | 3,451,374 | G→A | 6.9% | G115G (GGC→GGT) | smpB ← | tmRNA‑binding protein |
| RA | BS168_reference_genome | 3,516,325 | A→C | 26.0% | S187A (TCC→GCC) | epsM ← | putative O‑acetyltransferase involved in biofilm matrix formation |
| RA | BS168_reference_genome | 3,550,926 | C→T | 9.7% | A192A (GCG→GCA) | mdxK ← | maltose phosphorylase |
| RA | BS168_reference_genome | 3,644,663 | C→T | 7.0% | D212N (GAC→AAC) | degU ← | two‑component response regulator |
| RA | BS168_reference_genome | 3,667,987 | Δ1 bp | 7.3% | coding (1925/2703 nt) | ggaB ← | poly(glucosyl N‑acetylgalactosamine 1‑phosphate) glucosyltransferase |
| RA | BS168_reference_genome | 3,728,415 | T→C | 6.3% | N16S (AAC→AGC) | BSU_36215 ← | hypothetical protein |
| RA | BS168_reference_genome | 3,770,058:1 | +A | 100% | intergenic (‑250/+46) | ywzF ← / ← csbD | conserved protein of unknown function/stress response protein |
| RA | BS168_reference_genome | 3,782,538 | G→A | 7.9% | F125F (TTC→TTT) | atpD ← | ATP synthase (subunit beta, component F1) |
| RA | BS168_reference_genome | 3,820,834 | T→C | 6.7% | K216K (AAA→AAG) | ywjA ← | putative ABC lipid transporter (ATP‑binding protein) |
| RA | BS168_reference_genome | 3,863,729 | G→T | 28.7% | Q178K (CAA→AAA) | lipL ← | amidotransferase of the octanoyl moiety from octanoyl‑GcvH to the E2 subunit of pyruvate dehydrogenase |
| RA | BS168_reference_genome | 3,913,926 | C→A | 16.7% | intergenic (‑413/‑83) | rodA ← / → ywcE | glycosyltransferase involved in extension of the lateral walls of the cell/holin‑like protein required for proper spore morphogenesis and germination |
| RA | BS168_reference_genome | 3,935,823 | Δ1 bp | 100% | intergenic (+35/+1) | ywbE → / ← rlmI | conserved protein of unknown function/large subunit ribosomal RNA m5C1962 methyltransferase |
| RA | BS168_reference_genome | 3,958,235 | C→A | 8.5% | A282E (GCG→GAG) | ilvK → | branched‑chain amino acid aminotransferase |
| RA | BS168_reference_genome | 4,011,659 | T→G | 13.5% | L419R (CTT→CGT) | citH → | secondary transporter of divalent metal ions/citrate complexes |
| RA | BS168_reference_genome | 4,031,276 | T→C | 7.8% | R124G (AGA→GGA) | yxxF ← | putative transporter |
| RA | BS168_reference_genome | 4,068,272 | T→A | 6.9% | K89* (AAG→TAG) | yxeA ← | conserved protein of unknown function |
| RA | BS168_reference_genome | 4,084,116 | T→C | 8.0% | I90V (ATT→GTT) | iolA ← | methylmalonate‑semialdehyde dehydrogenase |
| RA | BS168_reference_genome | 4,153,115 | G→T | 100% | L192I (CTT→ATT) | walK ← | two‑component sensor histidine kinase [YycG] |
| RA | BS168_reference_genome | 4,155,390:1 | +A | 100% | intergenic (‑181/+43) | trnY‑Lys ← / ← purA | tRNA‑Lys/adenylosuccinate synthetase |
| RA | BS168_reference_genome | 4,165,287 | T→A | 5.2% | L112F (TTA→TTT) | gdpP ← | phosphodiesterase acting on cyclic dinucleotides |
| RA | BS168_reference_genome | 4,196,097 | T→A | 5.5% | D79V (GAT→GTT) | maa ← | maltose O‑acetyltransferase |
| RA | pSIJ663_pHT315_araE_xy | 121 | G→C | 5.7% | intergenic (–/‑2857) | – / → eryR | –/– |
| RA | pSIJ663_pHT315_araE_xy | 131 | G→C | 6.3% | intergenic (–/‑2847) | – / → eryR | –/– |
| RA | pSIJ663_pHT315_araE_xy | 137 | A→C | 5.4% | intergenic (–/‑2841) | – / → eryR | –/– |
| RA | pSIJ663_pHT315_araE_xy | 2,159 | C→T | 5.1% | intergenic (–/‑819) | – / → eryR | –/– |
| RA | pSIJ663_pHT315_araE_xy | 2,206 | C→A | 9.6% | intergenic (–/‑772) | – / → eryR | –/– |
| JC | pSIJ663_pHT315_araE_xy | 2,210 | +TCTCG | 12.9% | intergenic (–/‑768) | – / → eryR | –/– |
| RA | pSIJ663_pHT315_araE_xy | 2,239 | A→G | 7.4% | intergenic (–/‑739) | – / → eryR | –/– |
| JC | pSIJ663_pHT315_araE_xy | 2,655 | Δ3 bp | 100% | intergenic (–/‑321) | – / → eryR | –/– |
| RA | pSIJ663_pHT315_araE_xy | 3,729 | T→G | 7.2% | intergenic (+14/‑142) | eryR → / → ampR | –/– |
| RA | pSIJ663_pHT315_araE_xy | 3,735 | A→T | 9.9% | intergenic (+20/‑136) | eryR → / → ampR | –/– |
| RA | pSIJ663_pHT315_araE_xy | 3,741 | G→T | 10.1% | intergenic (+26/‑130) | eryR → / → ampR | –/– |
| RA | pSIJ663_pHT315_araE_xy | 3,743 | A→T | 5.6% | intergenic (+28/‑128) | eryR → / → ampR | –/– |
| RA | pSIJ663_pHT315_araE_xy | 3,749 | A→T | 5.8% | intergenic (+34/‑122) | eryR → / → ampR | –/– |
| RA | pSIJ663_pHT315_araE_xy | 3,783 | G→T | 5.7% | intergenic (+68/‑88) | eryR → / → ampR | –/– |
| JC | pSIJ663_pHT315_araE_xy | 3,843 | Δ5 bp | 100% | intergenic (+128/‑24) | eryR → / → ampR | –/– |
| RA | pSIJ663_pHT315_araE_xy | 4,625 | A→C | 7.0% | K252T (AAG→ACG) | ampR → | |
| RA | pSIJ663_pHT315_araE_xy | 4,648 | T→A | 10.6% | Y260N (TAC→AAC) ‡ | ampR → | |
| RA | pSIJ663_pHT315_araE_xy | 4,649 | A→C | 8.3% | Y260S (TAC→TCC) ‡ | ampR → | |
| RA | pSIJ663_pHT315_araE_xy | 5,049 | C→T | 100% | intergenic (+318/–) | ampR → / – | –/– |
| RA | pSIJ663_pHT315_araE_xy | 5,173 | T→G | 6.4% | intergenic (+442/–) | ampR → / – | –/– |
| RA | pSIJ663_pHT315_araE_xy | 5,302 | A→C | 5.1% | intergenic (+571/–) | ampR → / – | –/– |
| RA | pSIJ663_pHT315_araE_xy | 5,464 | T→G | 6.1% | intergenic (+733/–) | ampR → / – | –/– |
| RA | pSIJ663_pHT315_araE_xy | 5,467 | T→G | 6.2% | intergenic (+736/–) | ampR → / – | –/– |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | BS168_reference_genome | 160977–161238 | 165598–164903 | 3666–4622 | 13 [9] | [10] 17 | [rrnI‑16S]–[rrnI‑5S] | [rrnI‑16S],rrnI‑23S,[rrnI‑5S] |
| * | * | ÷ | BS168_reference_genome | 166444–166703 | 171220–170392 | 3690–4777 | 11 [10] | [10] 11 | rrnH‑16S–[rrnH‑5S] | rrnH‑16S,rrnH‑23S,[rrnH‑5S] |
| * | * | ÷ | BS168_reference_genome | 171471–171679 | 176232–172533 | 855–4762 | 12 [10] | [10] 11 | rrnG‑16S–[rrnG‑5S] | rrnG‑16S,rrnG‑23S,[rrnG‑5S] |
| * | * | ÷ | BS168_reference_genome | 3485377–3485468 | 3486758 | 1291–1382 | 13 [7] | [3] 46 | [araE]–[araR] | [araE],[araR] |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | BS168_reference_genome | = 2653333 | 46 (0.960) | 3 (0.070) | 3/222 | NT | 9.7% | pseudogene (341/471 nt) | sigKn | RNA polymerase sporulation‑specific sigma‑K factor precursor (Sigma‑27) (N‑terminal half) |
| ? | BS168_reference_genome | 2701367 = | 12 (0.260) | pseudogene (30/417 nt) | sigKc | RNA polymerase sporulation‑specific sigma‑K factor precursor (Sigma‑27) (C‑terminal fragment) | |||||
| * | ? | BS168_reference_genome | 3486759 = | 3 (0.060) | 20 (0.010) +50 bp |
15/132 | NT | 94.7% | intergenic (+1/+48) | araR/yvbT | transcriptional repressor of the ara regulon (LacI family)/putative alkanal monooxygenase |
| ? | pSIJ663_pHT315_araE_xy | 9781 = | 1 (0.000) | intergenic (+5050/–) | ampR/– | –/– | |||||
| * | ? | pSIJ663_pHT315_araE_xy | = 5551 | 14 (0.000) | 6619 (1.020) | 193/222 | NT | 99.8% | intergenic (+820/–) | ampR/– | –/– |
| ? | pSIJ663_pHT315_araE_xy | 9889 = | NA (NA) | intergenic (+5158/–) | ampR/– | –/– | |||||
| * | ? | pSIJ663_pHT315_araE_xy | = 5614 | 5 (0.000) | 11 (0.000) | 10/226 | NT | 69.0% | intergenic (+883/–) | ampR/– | –/– |
| ? | pSIJ663_pHT315_araE_xy | 9532 = | 5 (0.000) | intergenic (+4801/–) | ampR/– | –/– | |||||