mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (lowest skew 10 of 48 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 2857675 = | 139 (0.990) | 3 (0.020) | 3/238 | NT | 2.3% | intergenic (+71/‑172) | nixA/nhoA | High‑affinity nickel‑transport protein NixA/N‑hydroxyarylamine O‑acetyltransferase |
| ? | USA300TCH1516_ALE | 2857737 = | 125 (0.970) | intergenic (+133/‑110) | nixA/nhoA | High‑affinity nickel‑transport protein NixA/N‑hydroxyarylamine O‑acetyltransferase | |||||
| * | ? | USA300TCH1516_ALE | = 2850830 | 140 (1.000) | 4 (0.030) | 4/230 | NT | 3.0% | intergenic (+29/+90) | pcp/USA300HOU_RS14605 | Pyrrolidone‑carboxylate peptidase/hypothetical protein |
| ? | USA300TCH1516_ALE | = 2850851 | 137 (1.100) | intergenic (+50/+69) | pcp/USA300HOU_RS14605 | Pyrrolidone‑carboxylate peptidase/hypothetical protein | |||||
| * | ? | USA300TCH1516_ALE | 2830190 = | 143 (1.020) | 3 (0.020) | 3/236 | NT | 2.5% | intergenic (+18/+429) | icaC/lipA_2 | putative poly‑beta‑1,6‑N‑acetyl‑D‑glucosamine export protein/Lipase 1 |
| ? | USA300TCH1516_ALE | 2830247 = | 100 (0.780) | intergenic (+75/+372) | icaC/lipA_2 | putative poly‑beta‑1,6‑N‑acetyl‑D‑glucosamine export protein/Lipase 1 | |||||
| * | ? | USA300TCH1516_ALE | 2793464 = | 180 (1.290) | 3 (0.020) | 3/238 | NT | 1.8% | coding (2179/2982 nt) | yueB | ESX secretion system protein YueB |
| ? | USA300TCH1516_ALE | 2793513 = | 159 (1.230) | coding (2130/2982 nt) | yueB | ESX secretion system protein YueB | |||||
| * | ? | USA300TCH1516_ALE | = 2724829 | 146 (1.040) | 3 (0.020) | 3/246 | NT | 2.1% | coding (466/1107 nt) | USA300HOU_RS14015 | Baeyer‑Villiger flavin‑containing monooxygenase |
| ? | USA300TCH1516_ALE | = 2724865 | 134 (1.010) | coding (430/1107 nt) | USA300HOU_RS14015 | Baeyer‑Villiger flavin‑containing monooxygenase | |||||
| * | ? | USA300TCH1516_ALE | = 2682927 | 160 (1.140) | 4 (0.030) | 3/240 | NT | 2.5% | intergenic (‑106/‑148) | mvaA/mvaS | 3‑hydroxy‑3‑methylglutaryl‑coenzyme A reductase/Hydroxymethylglutaryl‑CoA synthase |
| ? | USA300TCH1516_ALE | = 2682968 | 169 (1.300) | intergenic (‑147/‑107) | mvaA/mvaS | 3‑hydroxy‑3‑methylglutaryl‑coenzyme A reductase/Hydroxymethylglutaryl‑CoA synthase | |||||
| * | ? | USA300TCH1516_ALE | 2679992 = | 127 (0.910) | 4 (0.030) | 4/228 | NT | 3.3% | intergenic (+44/+716) | ssaA2_4/USA300HOU_RS13810 | Staphylococcal secretory antigen ssaA2/hypothetical protein |
| ? | USA300TCH1516_ALE | 2681425 = | 121 (0.980) | intergenic (‑460/+119) | USA300HOU_RS13810/mvaA | hypothetical protein/3‑hydroxy‑3‑methylglutaryl‑coenzyme A reductase | |||||
| * | ? | USA300TCH1516_ALE | = 2670076 | 147 (1.050) | 3 (0.020) | 3/234 | NT | 2.2% | intergenic (+13/+69) | yicL/lipR | putative inner membrane transporter YicL/Putative acetyl‑hydrolase LipR |
| ? | USA300TCH1516_ALE | = 2670127 | 139 (1.100) | intergenic (+64/+18) | yicL/lipR | putative inner membrane transporter YicL/Putative acetyl‑hydrolase LipR | |||||
| * | ? | USA300TCH1516_ALE | 2579488 = | 145 (1.040) | 3 (0.020) | 3/244 | NT | 2.1% | coding (761/1638 nt) | yveA | Aspartate‑proton symporter |
| ? | USA300TCH1516_ALE | 2579549 = | 142 (1.070) | coding (822/1638 nt) | yveA | Aspartate‑proton symporter | |||||
| * | ? | USA300TCH1516_ALE | 2545705 = | 160 (1.140) | 5 (0.040) | 5/234 | NT | 3.6% | intergenic (+6/+46) | hlgB/USA300HOU_RS13110 | Gamma‑hemolysin component B/hypothetical protein |
| ? | USA300TCH1516_ALE | 2545745 = | 122 (0.960) | intergenic (+46/+6) | hlgB/USA300HOU_RS13110 | Gamma‑hemolysin component B/hypothetical protein | |||||