mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | AM260479 | 453,151 | 0 | T | C | 38.5% | 5.6 / 10.4 | 13 | T334A (ACC→GCC) | coxF | xanthine and CO dehydrogenase, maturation factor |
| * | AM260479 | 453,152 | 0 | G | A | 38.5% | 4.4 / 10.7 | 13 | G333G (GGC→GGT) | coxF | xanthine and CO dehydrogenase, maturation factor |
| * | AM260480 | 1,017,068 | 0 | A | T | 28.0% | 38.9 / 18.2 | 25 | L171Q (CTG→CAG) | kdpB | potassium transport system ATPase chain B |
| Marginal new junction evidence (lowest skew 10 of 50 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AM260480 | 1930349 = | 40 (1.360) | 8 (0.310) | 8/186 | 1.2 | 19.3% | coding (2771/2817 nt) | fdwA | Tungsten‑containing formate dehydrogenase alpha subunit |
| ? | AM260480 | 1930363 = | 32 (1.250) | coding (2757/2817 nt) | fdwA | Tungsten‑containing formate dehydrogenase alpha subunit | |||||
| * | ? | AM260479 | = 642122 | 27 (1.010) | 6 (0.240) | 6/198 | 1.5 | 18.8% | coding (433/1431 nt) | xseA | Exodeoxyribonuclease VII, large subunit |
| ? | AM260479 | = 642135 | 27 (1.100) | coding (446/1431 nt) | xseA | Exodeoxyribonuclease VII, large subunit | |||||
| * | ? | AM260480 | 2577612 = | 53 (1.800) | 6 (0.230) | 5/192 | 1.8 | 13.4% | coding (827/1665 nt) | nirS | cytochrome cd1 nitrite reductase (NirS) |
| ? | AM260480 | 2577663 = | 30 (1.130) | coding (878/1665 nt) | nirS | cytochrome cd1 nitrite reductase (NirS) | |||||
| * | ? | AM260479 | = 2312179 | 24 (0.900) | 4 (0.170) | 4/194 | 1.9 | 19.6% | coding (54/1551 nt) | bla1 | Beta‑lactamase class C |
| ? | AM260479 | = 2312226 | 11 (0.460) | coding (101/1551 nt) | bla1 | Beta‑lactamase class C | |||||
| * | ? | AM260479 | = 1465426 | 18 (0.680) | 4 (0.170) | 4/194 | 1.9 | 17.3% | coding (4779/4857 nt) | gudB | NAD‑specific glutamate dehydrogenase |
| ? | AM260479 | = 1465451 | 22 (0.910) | coding (4754/4857 nt) | gudB | NAD‑specific glutamate dehydrogenase | |||||
| * | ? | AM260480 | = 540111 | 42 (1.420) | 4 (0.160) | 4/182 | 2.0 | 10.0% | coding (1227/1293 nt) | h16_B0478 | 7‑Keto‑8‑aminopelargonate synthetase and relatedenzymes |
| ? | AM260480 | = 540095 | 36 (1.430) | coding (1243/1293 nt) | h16_B0478 | 7‑Keto‑8‑aminopelargonate synthetase and relatedenzymes | |||||
| * | ? | AM260479 | = 3384911 | 31 (1.160) | 4 (0.160) | 4/200 | 2.0 | 12.5% | coding (409/1086 nt) | trmU | tRNA (5‑methylaminomethyl‑2‑thiouridylate)‑methyltransferase |
| ? | AM260479 | = 3384940 | 27 (1.080) | coding (380/1086 nt) | trmU | tRNA (5‑methylaminomethyl‑2‑thiouridylate)‑methyltransferase | |||||
| * | ? | AM260479 | 2297609 = | 19 (0.710) | 4 (0.160) | 4/200 | 2.0 | 16.1% | coding (130/681 nt) | h16_A2111 | Ribosomal‑protein‑alanine acetyltransferase |
| ? | AM260479 | 2297698 = | 24 (0.960) | coding (41/681 nt) | h16_A2111 | Ribosomal‑protein‑alanine acetyltransferase | |||||
| * | ? | AM260479 | = 1033846 | 23 (0.860) | 4 (0.160) | 4/204 | 2.0 | 17.1% | coding (881/1563 nt) | h16_A0938 | ABC‑type transporter, ATPase component: CUT2 family |
| ? | AM260479 | 1033877 = | 17 (0.670) | coding (850/1563 nt) | h16_A0938 | ABC‑type transporter, ATPase component: CUT2 family | |||||
| * | ? | AM260480 | = 2652271 | 35 (1.190) | 4 (0.150) | 4/196 | 2.1 | 10.4% | coding (1131/1194 nt) | h16_B2343 | conserved hypothetical protein |
| ? | AM260480 | = 2652302 | 37 (1.370) | coding (1100/1194 nt) | h16_B2343 | conserved hypothetical protein | |||||