mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | AM260479 | 160,041 | G→C | G102A (GGG→GCG) | h16_A0146 → | conserved hypothetical protein |
| RA | AM260479 | 160,043 | G→C | V103L (GTA→CTA) | h16_A0146 → | conserved hypothetical protein |
| RA | AM260479 | 208,932 | A→C | H322Q (CAT→CAG) | h16_A0195 ← | Putative GTPase (G3E family) |
| RA | AM260479 | 208,953 | A→C | V315V (GTT→GTG) | h16_A0195 ← | Putative GTPase (G3E family) |
| RA | AM260479 | 245,288 | T→G | L247V (TTG→GTG) | betA2 → | choline dehydrogenase |
| RA | AM260479 | 275,969 | +C | coding (268/558 nt) | h16_A0264 ← | Hypothetical protein |
| RA | AM260479 | 342,407 | T→C | L180L (TTG→CTG) | amtB → | ammonium transporter |
| RA | AM260479 | 406,488 | G→T | L70I (CTC→ATC) | h16_A0388 ← | ABC‑type transporter, ATPase component: HAAT family |
| RA | AM260479 | 452,997 | Δ1 bp | intergenic (‑22/+116) | h16_A0432 ← / ← coxF | Uncharacterized MobA‑related protein/xanthine and CO dehydrogenase, maturation factor |
| RA | AM260479 | 500,512 | G→A | W23* (TGG→TAG) | h16_A0473 → | ABC‑type transporter, permease component: PAAT family |
| RA | AM260479 | 518,612 | G→C | intergenic (+17/‑48) | h16_A0492 → / → pgam2 | Phospholipid‑binding protein/phosphoglycerate mutase 2 protein |
| RA | AM260479 | 547,818 | +C | intergenic (‑10/+27) | glyS ← / ← h16_A0522 | Glycyl‑tRNA synthetase beta subunit/conserved hypothetical protein |
| RA | AM260479 | 547,839 | Δ1 bp | intergenic (‑31/+6) | glyS ← / ← h16_A0522 | Glycyl‑tRNA synthetase beta subunit/conserved hypothetical protein |
| RA | AM260479 | 547,879 | 2 bp→GA | coding (595‑596/630 nt) | h16_A0522 ← | conserved hypothetical protein |
| RA | AM260479 | 561,006 | +G | intergenic (+9/+38) | h16_A0532 → / ← h16_A0533 | conserved hypothetical protein/universal stress protein, UspA family |
| RA | AM260479 | 564,366 | C→G | P73A (CCC→GCC) | h16_A0537 → | Uncharacterized protein conserved in bacteria |
| RA | AM260479 | 581,821 | +C | coding (117/1734 nt) | h16_A0555 → | zinc metalloprotease |
| RA | AM260479 | 582,589 | T→G | H295Q (CAT→CAG) | h16_A0555 → | zinc metalloprotease |
| RA | AM260479 | 582,759 | G→T | C352F (TGT→TTT) | h16_A0555 → | zinc metalloprotease |
| RA | AM260479 | 619,859 | G→T | H108N (CAC→AAC) | acrA1 ← | Cation/multidrug efflux system, mebrane‑fusion component |
| RA | AM260479 | 628,642 | Δ1 bp | coding (756/1206 nt) | h16_A0595 ← | Uncharacterized Fe‑S protein |
| RA | AM260479 | 628,654 | +C | coding (744/1206 nt) | h16_A0595 ← | Uncharacterized Fe‑S protein |
| RA | AM260479 | 637,111 | +G | intergenic (‑164/+218) | adk ← / ← kdsB | adenylate kinase/3‑Deoxy‑manno‑octulosonate cytidylyltransferase |
| RA | AM260479 | 724,768 | +C | coding (82/669 nt) | lysE → | lysine efflux permease |
| RA | AM260479 | 735,524 | +G | intergenic (‑409/+175) | h16_A0685 ← / ← h16_A0686 | hypothetical membrane spanning protein/Predictedpermease/CBS‑domain‑containing membrane protein |
| RA | AM260479 | 782,330 | +G | intergenic (‑680/‑42) | h16_A0723 ← / → h16_A0724 | hypothetical membrane protein/hypothetical membrane protein |
| RA | AM260479 | 782,333 | +A | intergenic (‑683/‑39) | h16_A0723 ← / → h16_A0724 | hypothetical membrane protein/hypothetical membrane protein |
| RA | AM260479 | 787,769 | +T | intergenic (‑549/+743) | h16_A0728 ← / ← h16_A0729 | response regulator containing CheY‑like receiver, AAA‑type ATPase, and DNA‑binding domains/transcriptional regulator, LysR‑family |
| RA | AM260479 | 787,882 | +T | intergenic (‑662/+630) | h16_A0728 ← / ← h16_A0729 | response regulator containing CheY‑like receiver, AAA‑type ATPase, and DNA‑binding domains/transcriptional regulator, LysR‑family |
| RA | AM260479 | 916,512 | T→C | V341A (GTG→GCG) | h16_A0836 → | predicted exporter of the RND superfamily |
| MC JC | AM260479 | 973,838 | Δ1,320 bp | [h16_A0881]–h16_A0882 | [h16_A0881], h16_A0882 | |
| RA | AM260479 | 1,042,407 | T→G | K131N (AAA→AAC) | h16_A0947 ← | Coproporphyrinogen III oxidase, Fe‑S oxidoreductase |
| RA | AM260479 | 1,056,947 | +G | intergenic (+211/‑15) | h16_A0964 → / → h16_A0965 | conserved hypothetical protein/conserved hypothetical protein |
| RA | AM260479 | 1,071,935 | +G | coding (626/627 nt) | h16_A0979 → | Hypothetical protein |
| RA | AM260479 | 1,071,996 | +G | intergenic (+60/‑123) | h16_A0979 → / → h16_A0980 | Hypothetical protein/Hypothetical protein |
| RA | AM260479 | 1,076,499 | C→T | P267L (CCG→CTG) | cpaF3 → | flp pilus assembly ATPase CpaF |
| RA | AM260479 | 1,076,517 | C→T | P273L (CCG→CTG) | cpaF3 → | flp pilus assembly ATPase CpaF |
| RA | AM260479 | 1,081,436 | +C | coding (437/447 nt) | h16_A0989 → | Hypothetical protein |
| RA | AM260479 | 1,081,530 | T→C | L30L (TTG→CTG) | h16_A0990 → | outer membrane protein and related peptidoglycan‑associated (lipo)proteins |
| RA | AM260479 | 1,089,440 | Δ1 bp | intergenic (+115/‑17) | h16_A0996 → / → h16_A0997 | FAD/FMN‑containing dehydrogenase/conserved hypothetical protein |
| RA | AM260479 | 1,112,158 | Δ1 bp | coding (2295/2469 nt) | xdhB1 ← | xanthine dehydrogenase, subunit B |
| RA | AM260479 | 1,167,791 | T→C | intergenic (+238/‑365) | h16_A1070 → / → cyoA1 | acyl dehydratase/bo3‑type quinol oxidase, subunit II |
| RA | AM260479 | 1,191,426 | Δ1 bp | coding (350/390 nt) | h16_A1095 ← | Hypothetical protein |
| RA | AM260479 | 1,191,771 | Δ1 bp | coding (5/390 nt) | h16_A1095 ← | Hypothetical protein |
| RA | AM260479 | 1,231,117 | Δ1 bp | coding (2606/2652 nt) | glnE → | glutamine synthetase adenylyltransferase |
| RA | AM260479 | 1,231,142 | Δ1 bp | coding (2631/2652 nt) | glnE → | glutamine synthetase adenylyltransferase |
| RA | AM260479 | 1,231,143 | C→G | P878A (CCC→GCC) | glnE → | glutamine synthetase adenylyltransferase |
| RA | AM260479 | 1,231,177 | Δ1 bp | intergenic (+14/‑201) | glnE → / → h16_A1128 | glutamine synthetase adenylyltransferase/Membrane protein |
| RA | AM260479 | 1,231,226 | 2 bp→CA | intergenic (+63/‑151) | glnE → / → h16_A1128 | glutamine synthetase adenylyltransferase/Membrane protein |
| RA | AM260479 | 1,240,057 | +T | intergenic (‑57/‑218) | h16_A1136 ← / → grpE | conserved hypothetical protein/molecular chaperone GrpE |
| RA | AM260479 | 1,354,645 | +C | intergenic (+98/‑15) | h16_A1248 → / → h16_A1249 | predicted signal transduction protein containingCHASE, PAS, GGDEF and EAL domains/Hypothetical protein |
| RA | AM260479 | 1,402,540 | C→G | G893A (GGC→GCC) | h16_A1292 ← | ATP‑dependent transcriptional regulator,MalT‑family |
| RA | AM260479 | 1,464,365 | Δ1 bp | coding (49/552 nt) | h16_A1354 → | conserved hypothetical protein |
| RA | AM260479 | 1,464,433 | A→G | Q39Q (CAA→CAG) | h16_A1354 → | conserved hypothetical protein |
| RA | AM260479 | 1,464,435 | T→C | L40P (CTG→CCG) | h16_A1354 → | conserved hypothetical protein |
| RA | AM260479 | 1,464,441 | T→C | V42A (GTG→GCG) | h16_A1354 → | conserved hypothetical protein |
| RA | AM260479 | 1,492,923 | T→C | L191L (TTG→CTG) | pdhB → | dihydrolipoamide acetyltransferase (E2) component of pyruvate dehydrogenase complex |
| RA | AM260479 | 1,492,953 | T→G | S201A (TCA→GCA) | pdhB → | dihydrolipoamide acetyltransferase (E2) component of pyruvate dehydrogenase complex |
| RA | AM260479 | 1,493,307 | T→G | F319V (TTC→GTC) | pdhB → | dihydrolipoamide acetyltransferase (E2) component of pyruvate dehydrogenase complex |
| RA | AM260479 | 1,744,688 | G→C | G211A (GGC→GCC) | h16_A1608 → | conserved hypothetical protein containing von Willebrand factor (vWF) type A |
| RA | AM260479 | 1,841,200 | +G | intergenic (‑2736/‑2680) | h16_A1684 ← / → ycaC | conserved hypothetical protein/YcaC related amidohydrolase |
| RA | AM260479 | 2,016,501 | T→C | V678V (GTT→GTC) | h16_A1857 → | Uncharacterized protein involved in exopolysaccharide biosynthesis |
| RA | AM260479 | 2,111,013 | +G | coding (553/1089 nt) | h16_A1942 → | Hypothetical protein |
| RA | AM260479 | 2,111,023 | +G | coding (563/1089 nt) | h16_A1942 → | Hypothetical protein |
| RA | AM260479 | 2,253,193 | +C | coding (243/258 nt) | h16_A2071 → | Hypothetical protein |
| RA | AM260479 | 2,274,430 | C→G | G565G (GGG→GGC) | h16_A2092 ← | Lysophospholipase, contains weak SAM‑dependent methyltransferase domain |
| RA | AM260479 | 2,303,559 | A→C | S217R (AGT→AGG) | h16_A2116 ← | Putative DNA polymerase bacteriophage‑type,uracil‑DNA glycosylase superfamily |
| RA | AM260479 | 2,517,378 | T→G | P77A (CCA→GCC) | zntA ← | putative heavy metal transporting P‑type ATPase |
| RA | AM260479 | 2,517,380 | G→C | P77A (CCA→GCC) | zntA ← | putative heavy metal transporting P‑type ATPase |
| RA | AM260479 | 2,517,386 | A→G | Y75H (TAT→CAT) | zntA ← | putative heavy metal transporting P‑type ATPase |
| RA | AM260479 | 2,579,212 | G→C | A121A (GCC→GCG) | h16_A2374 ← | Metallopeptidase, M23B subfamily |
| RA | AM260479 | 2,579,243 | A→G | I111T (ATT→ACT) | h16_A2374 ← | Metallopeptidase, M23B subfamily |
| RA | AM260479 | 2,580,039 | A→G | R155R (CGT→CGC) | h16_A2375 ← | Protein‑L‑isoaspartate carboxylmethyltransferase |
| RA | AM260479 | 2,594,082 | T→C | Q124Q (CAA→CAG) | cR ← | Recombinational DNA repair protein (RecF pathway) |
| RA | AM260479 | 2,594,128 | Δ1 bp | coding (326/957 nt) | cR ← | Recombinational DNA repair protein (RecF pathway) |
| RA | AM260479 | 2,616,505 | C→G | A45G (GCC→GGC) | h16_A2404 → | predicted esterase of the alpha‑beta hydrolase superfamily |
| RA | AM260479 | 2,787,923 | +C | intergenic (+165/‑55) | cafA2 → / → moaA1 | Ribonuclease G and E/molybdopterin biosynthesis protein |
| RA | AM260479 | 2,907,305 | 2 bp→AT | coding (181‑182/1221 nt) | h16_A2693 → | conserved hypothetical protein |
| RA | AM260479 | 2,907,313 | Δ1 bp | coding (189/1221 nt) | h16_A2693 → | conserved hypothetical protein |
| RA | AM260479 | 2,907,329 | Δ1 bp | coding (205/1221 nt) | h16_A2693 → | conserved hypothetical protein |
| RA | AM260479 | 2,907,333 | Δ1 bp | coding (209/1221 nt) | h16_A2693 → | conserved hypothetical protein |
| RA | AM260479 | 2,955,197 | Δ1 bp | coding (1034/1071 nt) | h16_A2735 → | phenylpropionate dioxygenase or related ring‑hydroxylating dioxygenase, large terminal subunit |
| RA | AM260479 | 3,247,959 | 2 bp→CA | coding (723‑724/813 nt) | h16_A3001 → | transcriptional regulator, LysR‑family |
| RA | AM260479 | 3,247,987 | Δ1 bp | coding (751/813 nt) | h16_A3001 → | transcriptional regulator, LysR‑family |
| RA | AM260479 | 3,247,992 | Δ1 bp | coding (756/813 nt) | h16_A3001 → | transcriptional regulator, LysR‑family |
| RA | AM260479 | 3,247,999 | Δ1 bp | coding (763/813 nt) | h16_A3001 → | transcriptional regulator, LysR‑family |
| RA | AM260479 | 3,248,007 | Δ1 bp | coding (771/813 nt) | h16_A3001 → | transcriptional regulator, LysR‑family |
| RA | AM260479 | 3,248,010 | C→G | A258A (GCC→GCG) | h16_A3001 → | transcriptional regulator, LysR‑family |
| RA | AM260479 | 3,248,045 | Δ1 bp | coding (809/813 nt) | h16_A3001 → | transcriptional regulator, LysR‑family |
| RA | AM260479 | 3,248,064 | +A | intergenic (+15/‑203) | h16_A3001 → / → hemK1 | transcriptional regulator, LysR‑family/methylase of polypeptide chain release factors |
| RA | AM260479 | 3,248,092 | G→C | intergenic (+43/‑175) | h16_A3001 → / → hemK1 | transcriptional regulator, LysR‑family/methylase of polypeptide chain release factors |
| RA | AM260479 | 3,285,635 | G→C | G181R (GGC→CGC) | nadB → | L‑Aspartate oxidase |
| RA | AM260479 | 3,301,576 | +G | intergenic (+45/‑146) | lspA → / → dfp | lipoprotein signal peptidase II/phosphopantothenoylcysteine synthetase/decarboxylase |
| RA | AM260479 | 3,302,920 | +C | coding (1199/1251 nt) | dfp → | phosphopantothenoylcysteine synthetase/decarboxylase |
| RA | AM260479 | 3,333,763 | +G | coding (5/615 nt) | serB2 → | phosphoserine phosphatase |
| MC JC | AM260479 | 3,399,144 | Δ1,321 bp | [leuS]–h16_A3140 | [leuS], h16_A3140 | |
| RA | AM260479 | 3,461,712 | +G | coding (823/969 nt) | h16_A3204 ← | transcriptional regulator, LysR‑family |
| RA | AM260479 | 3,515,018 | C→G | noncoding (32/75 nt) | tRNA‑Pro (CGG) → | tRNA‑Pro |
| RA | AM260479 | 3,515,314 | Δ1 bp | intergenic (+253/‑570) | tRNA‑Pro (CGG) → / → pilB | tRNA‑Pro/Type IV pilus assembly protein PilB |
| RA | AM260479 | 3,515,428 | +C | intergenic (+367/‑456) | tRNA‑Pro (CGG) → / → pilB | tRNA‑Pro/Type IV pilus assembly protein PilB |
| RA | AM260479 | 3,529,526 | +G | intergenic (‑40/‑264) | secA ← / → h16_A3265 | preprotein translocase subunit SecA/Hypothetical protein |
| RA | AM260479 | 3,529,607 | +C | intergenic (‑121/‑183) | secA ← / → h16_A3265 | preprotein translocase subunit SecA/Hypothetical protein |
| RA | AM260479 | 3,602,642 | +A | intergenic (‑39/+87) | h16_A3328 ← / ← h16_A3329 | conserved hypothetical membrane protein/unassigned peptidase, M61 subfamily (glycyl aminopeptidase) |
| RA | AM260479 | 3,602,688 | (G)6→5 | intergenic (‑85/+41) | h16_A3328 ← / ← h16_A3329 | conserved hypothetical membrane protein/unassigned peptidase, M61 subfamily (glycyl aminopeptidase) |
| RA | AM260479 | 3,615,716 | +C | intergenic (+42/‑147) | prfA → / → h16_A3341 | protein chain release factor A (RF‑1)/Hypothetical protein |
| RA | AM260479 | 3,615,722 | +A | intergenic (+48/‑141) | prfA → / → h16_A3341 | protein chain release factor A (RF‑1)/Hypothetical protein |
| RA | AM260479 | 3,720,402 | G→T | D170Y (GAC→TAC) | h16_A3441 → | periplasmic multimodular transpeptidase/transglycosylase |
| RA | AM260479 | 3,905,524 | G→C | A1285G (GCC→GGC) | putA ← | bifunctional proline dehydrogenase and proline oxidase |
| RA | AM260479 | 3,972,184 | +C | intergenic (‑136/‑395) | h16_A3682 ← / → h16_A3683 | putative methyltransferase/Hypothetical protein |
| RA | AM260479 | 3,983,831 | C→T | D23N (GAC→AAC) | ntrX ← | response regulator containing a Fis‑type DNA‑binding domain, NtrX |
| RA | AM260479 | 3,998,635 | +C | intergenic (‑221/+527) | h16_A3705 ← / ← h16_A3706 | transcriptional regulator, LysR‑family/conserved hypothetical protein |
| RA | AM260480 | 69,908 | +G | intergenic (+89/‑184) | h16_B0060 → / → h16_B0061 | conserved hypothetical membrane protein/ABC‑type transporter, periplasmic component |
| RA | AM260480 | 153,689 | +G | intergenic (‑67/+93) | h16_B0133 ← / ← h16_B0134 | conserved hypothetical protein/outer membrane protein (porin) |
| RA | AM260480 | 157,096 | +G | intergenic (‑26/+41) | h16_B0136 ← / ← h16_B0137 | cysteine desulfurase/conserved hypothetical membrane protein |
| RA | AM260480 | 159,381 | +G | intergenic (‑13/‑342) | h16_B0138 ← / → h16_B0139 | transcriptional regulator, IclR‑family/conserved hypothetical transmembrane protein |
| RA | AM260480 | 159,389 | +G | intergenic (‑21/‑334) | h16_B0138 ← / → h16_B0139 | transcriptional regulator, IclR‑family/conserved hypothetical transmembrane protein |
| RA | AM260480 | 164,760 | C→T | A15V (GCC→GTC) | acoR → | transcriptional regulator of acetoin catabolism,PspF‑family |
| RA | AM260480 | 274,470 | (G)10→9 | intergenic (+18/‑626) | h16_B0246 → / → fhaB | Hypothetical protein/filamentous hemagglutinin / adhesin |
| RA | AM260480 | 293,407 | T→A | Y759N (TAC→AAC) | flhF → | Flagellar GTP‑binding protein |
| RA | AM260480 | 433,189 | A→C | R133R (CGA→CGC) | h16_B0381 → | Acetyl‑CoA acetyltransferase |
| RA | AM260480 | 507,425 | +A | coding (27/564 nt) | h16_B0448 → | fragment of ABC‑type transport system,periplasmic component: APC family |
| RA | AM260480 | 635,877 | T→C | E259E (GAA→GAG) | fliM ← | flagellar motor switch protein |
| RA | AM260480 | 753,133 | T→C | K37E (AAG→GAG) | h16_B0675 ← | Acyl‑CoA dehydrogenase,short‑chain specific |
| RA | AM260480 | 919,006 | T→G | C159G (TGC→GGC) | h16_B0812 → | hydrolase or acyltransferase (alpha/beta hydrolase superfamily) |
| RA | AM260480 | 951,073 | +G | intergenic (‑29/+230) | h16_B0838 ← / ← h16_B0839 | conserved hypothetical protein/transcriptional regulator, CRP‑family |
| RA | AM260480 | 963,917 | Δ1 bp | intergenic (+84/‑3) | h16_B0849 → / → h16_B0850 | Acyl‑CoA dehydrogenase/Acyl‑CoA dehydrogenase, short‑chain specific |
| RA | AM260480 | 978,518 | A→G | S117G (AGC→GGC) | h16_B0862 → | cytosine deaminase or related metal‑dependent hydrolase |
| RA | AM260480 | 1,166,676 | +G | intergenic (+150/‑109) | h16_B1032 → / → h16_B1033 | conserved hypothetical protein/probable extra‑cytoplasmic solute receptor |
| RA | AM260480 | 1,192,562 | +C | coding (163/594 nt) | cccA → | cytochrome c, mono‑or diheme variant |
| RA | AM260480 | 1,326,746 | +G | intergenic (+47/‑123) | h16_B1172 → / → h16_B1173 | Amidase/MFS transporter |
| RA | AM260480 | 1,326,751 | +G | intergenic (+52/‑118) | h16_B1172 → / → h16_B1173 | Amidase/MFS transporter |
| RA | AM260480 | 1,326,761 | +G | intergenic (+62/‑108) | h16_B1172 → / → h16_B1173 | Amidase/MFS transporter |
| RA | AM260480 | 2,018,102 | +C | intergenic (+111/+98) | h16_B1778 → / ← h16_B1779 | putative peptidase/putative peptidase, S33 family |
| RA | AM260480 | 2,135,859 | +C | intergenic (‑237/‑97) | h16_B1889 ← / → h16_B1890 | transcriptional regulator, IclR‑family/APC transporter, AAT family |
| RA | AM260480 | 2,295,879 | T→A | Q603L (CAG→CTG) | h16_B2042 ← | Hypothetical protein |
| RA | AM260480 | 2,308,233 | (C)5→4 | intergenic (+176/‑161) | h16_B2050 → / → h16_B2051 | response regulator containing a GGDEF effector domain/conserved hypothetical protein |
| RA | AM260480 | 2,431,093 | Δ1 bp | coding (2380/2469 nt) | h16_B2148 → | membrane carboxypeptidase |
| RA | AM260480 | 2,737,499 | A→G | intergenic (‑216/+28) | h16_B2423 ← / ← h16_B2424 | periplasmic solute binding protein/Hypothetical protein |
| RA | AM260480 | 2,737,505 | Δ1 bp | intergenic (‑222/+22) | h16_B2423 ← / ← h16_B2424 | periplasmic solute binding protein/Hypothetical protein |
| RA | AM260480 | 2,737,510 | T→G | intergenic (‑227/+17) | h16_B2423 ← / ← h16_B2424 | periplasmic solute binding protein/Hypothetical protein |
| RA | AM260480 | 2,843,580 | +G | intergenic (‑1/+68) | pip ← / ← h16_B2516 | prolyl aminopeptidase/transcriptional regulator, LysR‑family |
| MC JC | AM260480 | 2,912,452 | Δ39 bp | intergenic (+243/–) | h16_B2579 → / – | cold shock protein, DNA‑binding/– |
| RA | AY305378 | 682 | C→A | P190T (CCG→ACG) | hoxK → | membrane‑bound [NiFe] hydrogenase small subunit |
| JC JC | AY305378 | 84,810 | ISAE1 (+) +8 bp | [hoxW] | [hoxW] | |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | AM260479 | 24065 | 24083 | 19 | 3 [1] | [0] 2 | h16_A0015 | conserved hypothetical protein |
| * | * | ÷ | AM260479 | 55287 | 55326 | 40 | 5 [1] | [0] 2 | h16_A0040 | predicted membrane protein |
| * | * | ÷ | AM260479 | 156371 | 156440 | 70 | 2 [0] | [1] 5 | [h16_A0142] | [h16_A0142] |
| * | * | ÷ | AM260479 | 381495 | 381639 | 145 | 2 [1] | [0] 2 | ftsY | signal recognition particle receptor FtsY |
| * | * | ÷ | AM260479 | 442932 | 443001 | 70 | 2 [1] | [0] 2 | h16_A0423 | multidrug resistance efflux pump |
| * | * | ÷ | AM260479 | 522675 | 522685 | 11 | 2 [0] | [0] 2 | ruvB | holliday junction resolvasome, helicase subunit RuvB |
| * | * | ÷ | AM260479 | 570430 | 570516 | 87 | 2 [1] | [1] 2 | h16_A0542/h16_A0543 | signal transduction histidine kinase/response regulator, OmpR‑family |
| * | * | ÷ | AM260479 | 602913 | 602962 | 50 | 3 [1] | [1] 5 | [sua] | [sua] |
| * | * | ÷ | AM260479 | 625248 | 625286 | 39 | 2 [1] | [1] 3 | [h16_A0591] | [h16_A0591] |
| * | * | ÷ | AM260479 | 663334 | 663376 | 43 | 4 [0] | [0] 2 | h16_A0625 | outer membrane protein (porin) |
| * | * | ÷ | AM260479 | 718129 | 718167 | 39 | 2 [0] | [0] 4 | h16_A0667 | Sodium:sulfate symporter transmembrane region |
| * | * | ÷ | AM260479 | 791374 | 791394 | 21 | 5 [1] | [0] 2 | [h16_A0732] | [h16_A0732] |
| * | * | ÷ | AM260479 | 791431 | 791528 | 98 | 2 [0] | [1] 4 | h16_A0732 | Beta‑propeller domains of methanol dehydrogenase‑type (homolog) |
| * | * | ÷ | AM260479 | 805394 | 805414 | 21 | 2 [0] | [0] 3 | h16_A0741 | conserved hypothetical protein |
| * | * | ÷ | AM260479 | 922796 | 922819 | 24 | 2 [0] | [0] 2 | paaJ | 3‑Ketoacyl‑CoA‑thiolase P‑44/SCP2 |
| * | * | ÷ | AM260479 | 1017300 | 1017334 | 35 | 2 [0] | [0] 2 | h16_A0921 | Aerobic‑type carbon monoxide dehydrogenase homolog, small subunit |
| * | * | ÷ | AM260479 | 1109813 | 1109875 | 63 | 3 [1] | [0] 2 | [add] | [add] |
| * | * | ÷ | AM260479 | 1129299 | 1129380 | 82 | 2 [1] | [0] 2 | [h16_A1031] | [h16_A1031] |
| * | * | ÷ | AM260479 | 1228098 | 1228119 | 22 | 2 [0] | [0] 3 | [h16_A1126] | [h16_A1126] |
| * | * | ÷ | AM260479 | 1381183 | 1381246 | 64 | 3 [1] | [1] 2 | h16_A1272 | conserved hypothetical protein |
| * | * | ÷ | AM260479 | 1639401 | 1639403 | 3 | 2 [0] | [0] 4 | gatA3/h16_A1510 | Glutamyl/Aspartyl‑tRNA(Gln/Asp) amidotransferasesubunit A/predicted transcription regulator, contains HTH domain (MarR family) |
| * | * | ÷ | AM260479 | 1646997 | 1647056 | 60 | 5 [1] | [0] 2 | [h16_A1515]–[ispZ] | [h16_A1515],[ispZ] |
| * | * | ÷ | AM260479 | 1723450 | 1723519 | 70 | 3 [1] | [1] 2 | [h16_A1589] | [h16_A1589] |
| * | * | ÷ | AM260479 | 1741042 | 1741064 | 23 | 2 [0] | [0] 2 | h16_A1604 | MoxR‑like ATPase |
| * | * | ÷ | AM260479 | 2154180 | 2154194 | 15 | 2 [0] | [0] 2 | h16_A1978/h16_A1979 | conserved hypothetical protein/conserved hypothetical protein |
| * | * | ÷ | AM260479 | 2158457 | 2158464 | 8 | 2 [0] | [0] 2 | h16_A1984 | Hypothetical protein |
| * | * | ÷ | AM260479 | 2208795 | 2208832 | 38 | 2 [0] | [1] 2 | h16_A2032 | hypothetical membrane associated protein |
| * | * | ÷ | AM260479 | 2253282 | 2253359 | 78 | 3 [1] | [1] 4 | h16_A2072 | predicted permease |
| * | * | ÷ | AM260479 | 2426137 | 2426150 | 14 | 2 [0] | [1] 2 | [lytT] | [lytT] |
| * | * | ÷ | AM260479 | 2449856 | 2449876 | 21 | 2 [0] | [1] 2 | h16_A2254 | ABC‑type transporter, permease component |
| * | * | ÷ | AM260479 | 2463471 | 2463536 | 66 | 6 [1] | [1] 2 | h16_A2268/h16_A2269 | uncharacterized conserved protein/bacterioferritin comigratory protein |
| * | * | ÷ | AM260479 | 2546034 | 2546153 | 120 | 2 [0] | [1] 4 | argAB | acetylglutamate kinase and acetyltransferase |
| * | * | ÷ | AM260479 | 2651960 | 2652002 | 43 | 6 [0] | [0] 6 | ppk1 | polyphosphate kinase |
| * | * | ÷ | AM260479 | 2685658 | 2685658 | 1 | 2 [0] | [0] 2 | gloB2 | hydroxyacylglutathione hydrolase |
| * | * | ÷ | AM260479 | 2723559 | 2723624 | 66 | 2 [0] | [1] 2 | h16_A2508 | Glycerol‑3‑phosphate dehydrogenase |
| * | * | ÷ | AM260479 | 3026541 | 3026587 | 47 | 2 [1] | [1] 2 | [asmA] | [asmA] |
| * | * | ÷ | AM260479 | 3032753 | 3032777 | 25 | 2 [1] | [1] 3 | h16_A2804 | conserved hypothetical protein |
| * | * | ÷ | AM260479 | 3041920 | 3041920 | 1 | 2 [0] | [0] 2 | h16_A2814 | predicted metal‑dependent hydrolase/Putative cyclase |
| * | * | ÷ | AM260479 | 3341373 | 3341417 | 45 | 3 [1] | [0] 2 | [h16_A3087] | [h16_A3087] |
| * | * | ÷ | AM260479 | 3360881 | 3360917 | 37 | 2 [0] | [0] 2 | h16_A3107 | 4‑Hydroxybenzoate octaprenyltransferase |
| * | * | ÷ | AM260479 | 3365812 | 3365835 | 24 | 2 [1] | [0] 2 | cG | ATP‑dependent DNA helicase |
| * | * | ÷ | AM260479 | 3452013 | 3452031 | 19 | 2 [1] | [0] 2 | [h16_A3193] | [h16_A3193] |
| * | * | ÷ | AM260479 | 3462503 | 3462557 | 55 | 3 [1] | [0] 2 | [h16_A3204] | [h16_A3204] |
| * | * | ÷ | AM260479 | 3472992 | 3473005 | 14 | 2 [0] | [0] 2 | h16_A3218/h16_A3219 | transcriptional regulator, TetR/AcrR‑family/Hypothetical protein |
| * | * | ÷ | AM260479 | 3482494 | 3482519 | 26 | 2 [0] | [0] 4 | h16_A3225/h16_A3226 | ABC‑type transporter, ATPase and permease components/Hypothetical protein |
| * | * | ÷ | AM260479 | 3548181 | 3548215 | 35 | 3 [0] | [0] 2 | [ftsI1]–[ftsL] | [ftsI1],[ftsL] |
| * | * | ÷ | AM260479 | 3554446 | 3554532 | 87 | 2 [1] | [1] 6 | h16_A3287 | Hypothetical protein |
| * | * | ÷ | AM260479 | 3609115 | 3609186 | 72 | 3 [1] | [1] 3 | [h16_A3334] | [h16_A3334] |
| * | * | ÷ | AM260479 | 3671716 | 3671761 | 46 | 2 [0] | [1] 2 | h16_A3390/h16_A3391 | signal transduction histidine kinase/Hypothetical protein related to helicases |
| * | * | ÷ | AM260479 | 3722896 | 3722979 | 84 | 4 [1] | [0] 2 | h16_A3442/lysA2 | protein implicated in iron transport, frataxin homolog/diaminopimelate decarboxylase |
| * | * | ÷ | AM260479 | 3857089 | 3857160 | 72 | 3 [1] | [1] 2 | h16_A3590 | C4‑dicarboxylate transport protein |
| * | * | ÷ | AM260479 | 3871540 | 3871608 | 69 | 2 [0] | [1] 2 | [h16_A3603] | [h16_A3603] |
| * | * | ÷ | AM260479 | 3910001 | 3910038 | 38 | 2 [0] | [0] 2 | priA | Primosomal protein N' |
| * | * | ÷ | AM260479 | 4004528 | 4004553 | 26 | 2 [0] | [1] 3 | h16_A3710 | response regulator, NarL‑family |
| * | * | ÷ | AM260480 | 81706 | 81725 | 20 | 6 [1] | [1] 4 | fmdA1/h16_B0073 | Formamidase/ABC‑type transporter |
| * | * | ÷ | AM260480 | 174665–175127 | 179995–175130 | 4–5331 | 3 [2] | [1] 4 | rrsD–[rrfD] | rrsD,tRNA‑Ile (GAT),tRNA‑Ala (TGC),rrlD,[rrfD] |
| * | * | ÷ | AM260480 | 193566 | 193615 | 50 | 4 [2] | [1] 5 | h16_B0168 | putative multidrug resistance protein |
| * | * | ÷ | AM260480 | 237928 | 237954 | 27 | 4 [2] | [1] 3 | [h16_B0211] | [h16_B0211] |
| * | * | ÷ | AM260480 | 334552 | 334605 | 54 | 4 [2] | [2] 4 | h16_B0298/h16_B0299 | transcriptional regulator, LysR‑family/putative glucose/sorbosone dehydrogenase |
| * | * | ÷ | AM260480 | 496899 | 496920 | 22 | 4 [0] | [2] 3 | [nhaA] | [nhaA] |
| * | * | ÷ | AM260480 | 545502 | 545541 | 40 | 3 [2] | [2] 3 | [h16_B0481]–[h16_B0482] | [h16_B0481],[h16_B0482] |
| * | * | ÷ | AM260480 | 571266 | 571296 | 31 | 6 [0] | [0] 8 | h16_B0507 | Hypothetical protein |
| * | * | ÷ | AM260480 | 665349 | 665360 | 12 | 4 [2] | [1] 4 | h16_B0592 | conserved hypothetical protein |
| * | * | ÷ | AM260480 | 751998 | 752045 | 48 | 3 [1] | [2] 3 | h16_B0674/h16_B0675 | conserved hypothetical protein/Acyl‑CoA dehydrogenase,short‑chain specific |
| * | * | ÷ | AM260480 | 757301 | 757350 | 50 | 3 [1] | [1] 3 | [h16_B0678] | [h16_B0678] |
| * | * | ÷ | AM260480 | 867731–872735 | 872735 | 1–5005 | 4 [2] | [2] 4 | [rrsE]–[rrfE] | [rrsE],tRNA‑Ile (GAT),tRNA‑Ala (TGC),rrlE,[rrfE] |
| * | * | ÷ | AM260480 | 1152682 | 1152731 | 50 | 3 [2] | [2] 3 | h16_B1021 | Glycine‑rich protein |
| * | * | ÷ | AM260480 | 1201096 | 1201165 | 70 | 8 [2] | [2] 4 | dnaE2 | DNA polymerase III alpha subunit |
| * | * | ÷ | AM260480 | 1208494 | 1208527 | 34 | 3 [0] | [2] 4 | h16_B1068 | conserved hypothetical protein |
| * | * | ÷ | AM260480 | 1222279 | 1222299 | 21 | 5 [0] | [1] 23 | h16_B1080/tyrB2 | Hypothetical protein/tyrosine aminotransferase |
| * | * | ÷ | AM260480 | 1319239 | 1319264 | 26 | 3 [1] | [2] 3 | h16_B1167/h16_B1168 | Hypothetical protein/conserved hypothetical protein |
| * | * | ÷ | AM260480 | 1434783 | 1434858 | 76 | 3 [1] | [2] 4 | h16_B1277 | hypothetical membrane associated protein |
| * | * | ÷ | AM260480 | 1465490 | 1465533 | 44 | 3 [2] | [2] 3 | h16_B1311 | Hypothetical protein |
| * | * | ÷ | AM260480 | 1482266 | 1482295 | 30 | 3 [2] | [1] 5 | h16_B1335 | Acyl‑CoA synthetase (AMP‑forming)/AMP‑acid ligase II |
| * | * | ÷ | AM260480 | 1632945 | 1633020 | 76 | 3 [2] | [2] 4 | [h16_B1458] | [h16_B1458] |
| * | * | ÷ | AM260480 | 1861305 | 1861354 | 50 | 4 [2] | [2] 3 | h16_B1648 | Hypothetical protein |
| * | * | ÷ | AM260480 | 2226939 | 2226959 | 21 | 3 [2] | [1] 6 | h16_B1971 | Sensor protein rcsC |
| * | * | ÷ | AM260480 | 2459863 | 2459903 | 41 | 4 [2] | [2] 3 | h16_B2171 | Glycosyltransferase, probably involved in cell wall biogenesis |
| * | * | ÷ | AM260480 | 2476820 | 2476867 | 48 | 3 [2] | [2] 3 | copS | signal transduction histidine kinase, copper sensor |
| * | * | ÷ | AM260480 | 2532171 | 2532212 | 42 | 4 [2] | [1] 3 | bkdA1 | 2‑Oxoisovalerate dehydrogenase E1 component,alpha subunit |
| * | * | ÷ | AM260480 | 2608826 | 2608872 | 47 | 5 [2] | [2] 4 | [h16_B2307] | [h16_B2307] |
| * | * | ÷ | AM260480 | 2647116 | 2647170 | 55 | 5 [2] | [2] 3 | h16_B2337 | conserved hypothetical protein |
| * | * | ÷ | AM260480 | 2866443 | 2866463 | 21 | 4 [2] | [0] 3 | h16_B2539 | conserved hypothetical protein |
| * | * | ÷ | AY305378 | 85326 | 85346 | 21 | 2 [0] | [1] 4 | [hoxI] | [hoxI] |
| * | * | ÷ | AY305378 | 100104 | 100226 | 123 | 3 [1] | [1] 3 | kfrA1 | putative KfrA protein |
| * | * | ÷ | AY305378 | 145727 | 145748 | 22 | 2 [0] | [0] 2 | PHG148/PHG149 | conserved hypothetical protein/hypothetical protein |
| * | * | ÷ | AY305378 | 151827 | 151896 | 70 | 2 [0] | [0] 3 | [PHG153] | [PHG153] |
| * | * | ÷ | AY305378 | 155981 | 156001 | 21 | 2 [1] | [0] 2 | PHG154/PHG155 | hypothetical protein/hypothetical protein |
| * | * | ÷ | AY305378 | 156558 | 156626 | 69 | 2 [0] | [0] 2 | kfrA2 | putative KfrA‑like protein |
| * | * | ÷ | AY305378 | 156828 | 156838 | 11 | 3 [1] | [0] 2 | PHG157 | conserved hypothetical protein |
| * | * | ÷ | AY305378 | 235078 | 235093 | 16 | 3 [1] | [0] 9 | ccmF | cytochrome C‑type biogenesis protein |
| * | * | ÷ | AY305378 | 451823 | 451867 | 45 | 2 [0] | [0] 2 | cbbLp/– | ribulose‑1,5‑bisphosphate carboxylase/oxygenase large subunit/– |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AM260479 | = 433107 | 16 (0.600) | 4 (0.160) | 4/198 | 2.0 | 21.7% | coding (285/624 nt) | pilV3 | Type IV pilus assembly protein PilV |
| ? | AM260479 | 433120 = | 14 (0.570) | coding (298/624 nt) | pilV3 | Type IV pilus assembly protein PilV | |||||
| * | ? | AM260479 | 553951 = | 12 (0.450) | 4 (0.160) | 4/206 | 2.0 | 27.1% | coding (444/999 nt) | phoH | phosphate starvation‑inducible protein PhoH,predicted ATPase |
| ? | AM260479 | 553972 = | 10 (0.390) | coding (423/999 nt) | phoH | phosphate starvation‑inducible protein PhoH,predicted ATPase | |||||
| * | ? | AM260479 | 1230588 = | 14 (0.530) | 5 (0.200) | 5/198 | 1.7 | 29.4% | coding (2077/2652 nt) | glnE | glutamine synthetase adenylyltransferase |
| ? | AM260479 | 1230615 = | 11 (0.450) | coding (2104/2652 nt) | glnE | glutamine synthetase adenylyltransferase | |||||
| * | ? | AM260479 | 3395698 = | 24 (0.900) | 7 (0.310) | 6/182 | 1.4 | 24.8% | coding (138/1059 nt) | holA | DNA polymerase III delta subunit |
| ? | AM260479 | 3395714 = | 22 (0.970) | coding (122/1059 nt) | holA | DNA polymerase III delta subunit | |||||
| * | ? | AM260479 | = 3612016 | 15 (0.560) | 4 (0.160) | 4/198 | 2.0 | 23.6% | coding (133/828 nt) | pfs | 5‑Methylthioadenosine nucleosidase |
| ? | AM260479 | = 3612064 | 12 (0.490) | coding (181/828 nt) | pfs | 5‑Methylthioadenosine nucleosidase | |||||
| * | ? | AM260479 | = 3875155 | 11 (0.410) | 3 (0.120) | 3/194 | 2.2 | 24.0% | coding (2277/3144 nt) | acrB11 | Cation/multidrug efflux pump |
| ? | AM260479 | = 3875215 | 9 (0.370) | coding (2337/3144 nt) | acrB11 | Cation/multidrug efflux pump | |||||
| * | ? | AM260479 | = 4014119 | 20 (0.750) | 7 (0.280) | 7/198 | 1.3 | 23.9% | coding (2400/3198 nt) | acrB7a | Cation/multidrug efflux pump |
| ? | AM260479 | = 4014127 | 26 (1.060) | coding (2408/3198 nt) | acrB7a | Cation/multidrug efflux pump | |||||
| * | ? | AM260480 | 203141 = | 23 (0.780) | 5 (0.180) | 5/204 | 2.0 | 21.8% | coding (1119/1413 nt) | h16_B0179 | Hemagglutinin‑related transmembrane protein |
| ? | AM260480 | 203228 = | 14 (0.500) | coding (1032/1413 nt) | h16_B0179 | Hemagglutinin‑related transmembrane protein | |||||
| * | ? | AM260480 | = 344621 | 35 (1.190) | 9 (0.370) | 8/178 | 1.2 | 25.7% | coding (922/984 nt) | h16_B0308 | transcriptional regulator, AraC‑family |
| ? | AM260480 | = 344603 | 23 (0.940) | coding (904/984 nt) | h16_B0308 | transcriptional regulator, AraC‑family | |||||
| * | ? | AM260480 | = 1885521 | 22 (0.750) | 8 (0.290) | 7/198 | 1.5 | 31.2% | coding (74/1026 nt) | h16_B1674 | hypothetical membrane spanning protein |
| ? | AM260480 | = 1885547 | 15 (0.550) | coding (100/1026 nt) | h16_B1674 | hypothetical membrane spanning protein | |||||
| * | ? | AM260480 | = 2007887 | 17 (0.580) | 6 (0.210) +GC |
4/210 | 2.3 | 20.6% | coding (105/918 nt) | h16_B1766 | transcriptional regulator, LysR‑family |
| ? | AM260480 | 2007935 = | 30 (1.020) | coding (57/918 nt) | h16_B1766 | transcriptional regulator, LysR‑family | |||||
| * | ? | AM260480 | 2658131 = | 16 (0.540) | 4 (0.150) | 4/198 | 2.2 | 20.6% | intergenic (‑101/‑256) | h16_B2348/h16_B2349 | response regulator containing sigma54 activator and Fis‑type DNA‑binding domains/response regulator‑like protein containing sigma54 activator and Fis‑type DNA‑binding domains |
| ? | AM260480 | 2658157 = | 16 (0.590) | intergenic (‑127/‑230) | h16_B2348/h16_B2349 | response regulator containing sigma54 activator and Fis‑type DNA‑binding domains/response regulator‑like protein containing sigma54 activator and Fis‑type DNA‑binding domains | |||||
| * | ? | AY305378 | = 449275 | 13 (0.690) | 4 (0.230) | 4/200 | 1.4 | 25.7% | coding (1249/1461 nt) | cbbLp | ribulose‑1,5‑bisphosphate carboxylase/oxygenase large subunit |
| ? | AY305378 | = 449286 | 11 (0.620) | coding (1238/1461 nt) | cbbLp | ribulose‑1,5‑bisphosphate carboxylase/oxygenase large subunit | |||||