mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | ||||||
|---|---|---|---|---|---|---|
| evidence | position | mutation | freq | annotation | gene | description |
| RA | 44,575 | T→C | 5.4% | D132D (GAT→GAC) | fixC → | putative oxidoreductase |
| RA | 83,587 | A→C | 5.6% | intergenic (‑58/+35) | leuA ← / ← leuL | 2‑isopropylmalate synthase/leu operon leader peptide |
| RA | 164,581 | A→C | 36.4% | intergenic (+47/‑149) | hrpB → / → mrcB | putative ATP‑dependent helicase/fused glycosyl transferase and transpeptidase |
| RA | 222,958 | Δ1 bp | 100% | coding (126/576 nt) | gmhB → | D,D‑heptose 1,7‑bisphosphate phosphatase |
| MC JC | 257,908 | Δ776 bp | 100% | [crl] | [crl] | |
| RA | 349,717 | T→C | 9.3% | intergenic (+145/‑295) | prpB → / → prpC | 2‑methylisocitrate lyase/2‑methylcitrate synthase |
| RA | 357,775 | A→T | 6.6% | intergenic (+321/+16) | codA → / ← cynR | cytosine/isoguanine deaminase/transcriptional activator of cyn operon; autorepressor |
| RA | 357,778 | C→T | 5.5% | intergenic (+324/+13) | codA → / ← cynR | cytosine/isoguanine deaminase/transcriptional activator of cyn operon; autorepressor |
| RA | 360,266 | T→G | 5.2% | L92R (CTT→CGT) | cynX → | putative cyanate transporter |
| RA | 543,091 | G→C | 7.9% | intergenic (+58/+170) | glxK → / ← allE | glycerate kinase II/S‑ureidoglycine aminohydrolase |
| RA | 543,094 | G→C | 7.1% | intergenic (+61/+167) | glxK → / ← allE | glycerate kinase II/S‑ureidoglycine aminohydrolase |
| RA | 551,488 | A→G | 5.2% | intergenic (+156/+39) | ybcF → / ← purK | putative carbonate kinase/N5‑carboxyaminoimidazole ribonucleotide synthase |
| RA | 551,489 | A→C | 5.3% | intergenic (+157/+38) | ybcF → / ← purK | putative carbonate kinase/N5‑carboxyaminoimidazole ribonucleotide synthase |
| RA | 551,495 | T→A | 5.4% | intergenic (+163/+32) | ybcF → / ← purK | putative carbonate kinase/N5‑carboxyaminoimidazole ribonucleotide synthase |
| RA | 551,496 | T→A | 5.4% | intergenic (+164/+31) | ybcF → / ← purK | putative carbonate kinase/N5‑carboxyaminoimidazole ribonucleotide synthase |
| RA | 631,504 | G→A | 5.5% | V537V (GTG→GTA) | cstA → | carbon starvation protein involved in peptide utilization; APC peptide transporter family protein |
| RA | 644,030 | A→G | 6.6% | intergenic (‑63/+167) | rnk ← / ← rna | regulator of nucleoside diphosphate kinase/ribonuclease I |
| RA | 644,034 | T→C | 7.2% | intergenic (‑67/+163) | rnk ← / ← rna | regulator of nucleoside diphosphate kinase/ribonuclease I |
| RA | 644,036 | A→T | 6.8% | intergenic (‑69/+161) | rnk ← / ← rna | regulator of nucleoside diphosphate kinase/ribonuclease I |
| RA | 644,038 | G→A | 5.7% | intergenic (‑71/+159) | rnk ← / ← rna | regulator of nucleoside diphosphate kinase/ribonuclease I |
| RA | 644,042 | C→T | 6.9% | intergenic (‑75/+155) | rnk ← / ← rna | regulator of nucleoside diphosphate kinase/ribonuclease I |
| RA | 695,024 | A→T | 5.5% | intergenic (‑69/‑77) | miaB ← / → ubiF | tRNA‑i(6)A37 methylthiotransferase/2‑octaprenyl‑3‑methyl‑6‑methoxy‑1,4‑benzoquinol oxygenase |
| RA | 749,648 | A→T | 5.7% | A20A (GCT→GCA) | ybgP ← | putative periplasmic pilin chaperone |
| RA | 758,491 | A→G | 6.1% | intergenic (+86/‑215) | sdhB → / → sucA | succinate dehydrogenase, FeS subunit/2‑oxoglutarate decarboxylase, thiamine triphosphate‑binding |
| RA | 781,254 | A→T | 6.7% | intergenic (+32/‑115) | lysY → / → lysZ | tRNA‑Lys/tRNA‑Lys |
| RA | 782,800 | C→T | 5.9% | A239V (GCG→GTG) | nadA → | quinolinate synthase, subunit A |
| RA | 786,506 | G→A | 5.5% | G292S (GGC→AGC) | aroG → | 3‑deoxy‑D‑arabino‑heptulosonate‑7‑phosphate synthase, phenylalanine repressible |
| RA | 830,388 | C→T | 7.2% | A86T (GCG→ACG) | ybiH ← | DUF1956 domain‑containing tetR family putative transcriptional regulator |
| RA | 871,315 | G→A | 6.9% | G117R (GGA→AGA) ‡ | gsiC → | glutathione ABC transporter permease |
| RA | 871,316 | G→T | 6.5% | G117V (GGA→GTA) ‡ | gsiC → | glutathione ABC transporter permease |
| RA | 871,321 | A→C | 7.3% | I119L (ATC→CTC) ‡ | gsiC → | glutathione ABC transporter permease |
| RA | 871,322 | T→C | 7.3% | I119T (ATC→ACC) ‡ | gsiC → | glutathione ABC transporter permease |
| RA | 929,684 | A→T | 7.8% | W427R (TGG→AGG) | cydD ← | glutathione/cysteine ABC transporter export permease/ATPase |
| RA | 963,761 | T→C | 6.5% | intergenic (+93/‑67) | rpsA → / → ihfB | 30S ribosomal subunit protein S1/integration host factor (IHF), DNA‑binding protein, beta subunit |
| RA | 963,762 | A→G | 6.5% | intergenic (+94/‑66) | rpsA → / → ihfB | 30S ribosomal subunit protein S1/integration host factor (IHF), DNA‑binding protein, beta subunit |
| RA | 963,763 | C→T | 6.5% | intergenic (+95/‑65) | rpsA → / → ihfB | 30S ribosomal subunit protein S1/integration host factor (IHF), DNA‑binding protein, beta subunit |
| RA | 963,764 | G→A | 6.6% | intergenic (+96/‑64) | rpsA → / → ihfB | 30S ribosomal subunit protein S1/integration host factor (IHF), DNA‑binding protein, beta subunit |
| RA | 1,087,867 | G→A | 5.1% | S664L (TCA→TTA) | pgaB ← | poly‑beta‑1,6‑N‑acetyl‑D‑glucosamine (PGA) N‑deacetylase outer membrane export lipoprotein |
| RA | 1,147,583 | G→T | 5.7% | intergenic (+43/‑38) | rpmF → / → plsX | 50S ribosomal subunit protein L32/putative phosphate acyltransferase |
| RA | 1,147,584 | C→T | 5.1% | intergenic (+44/‑37) | rpmF → / → plsX | 50S ribosomal subunit protein L32/putative phosphate acyltransferase |
| RA | 1,147,585 | A→G | 5.0% | intergenic (+45/‑36) | rpmF → / → plsX | 50S ribosomal subunit protein L32/putative phosphate acyltransferase |
| RA | 1,147,586 | A→C | 7.5% | intergenic (+46/‑35) | rpmF → / → plsX | 50S ribosomal subunit protein L32/putative phosphate acyltransferase |
| RA | 1,182,051 | G→A | 5.7% | A260V (GCG→GTG) | potD ← | spermidine/putrescine ABC transporter periplasmic binding protein |
| RA | 1,219,312 | T→C | 7.8% | intergenic (+111/‑289) | ymgF → / → ycgH | inner membrane division septum protein/pseudogene; putative ATP‑binding component of a transport system |
| RA | 1,286,965 | A→T | 18.3% | intergenic (+439/+101) | narI → / ← rttR | nitrate reductase 1, gamma (cytochrome b(NR)) subunit/rtT sRNA, processed from tyrT transcript |
| RA | 1,292,472 | G→A | 7.9% | intergenic (+107/+37) | galU → / ← hns | glucose‑1‑phosphate uridylyltransferase/global DNA‑binding transcriptional dual regulator H‑NS |
| RA | 1,292,473 | C→G | 7.9% | intergenic (+108/+36) | galU → / ← hns | glucose‑1‑phosphate uridylyltransferase/global DNA‑binding transcriptional dual regulator H‑NS |
| RA | 1,292,474 | T→C | 7.6% | intergenic (+109/+35) | galU → / ← hns | glucose‑1‑phosphate uridylyltransferase/global DNA‑binding transcriptional dual regulator H‑NS |
| RA | 1,351,228 | G→C | 11.0% | intergenic (‑189/+179) | fabI ← / ← ycjD | enoyl‑[acyl‑carrier‑protein] reductase, NADH‑dependent/DUF559 family endonuclease‑related protein |
| RA | 1,466,336 | C→G | 11.8% | pseudogene (945/2513 nt) | ydbA → | pseudogene, autotransporter homolog; interrupted by IS2 and IS30 |
| RA | 1,466,345 | T→C | 13.4% | pseudogene (954/2513 nt) | ydbA → | pseudogene, autotransporter homolog; interrupted by IS2 and IS30 |
| RA | 1,466,630 | G→C | 16.1% | pseudogene (1239/2513 nt) | ydbA → | pseudogene, autotransporter homolog; interrupted by IS2 and IS30 |
| RA | 1,466,639 | C→T | 16.9% | pseudogene (1248/2513 nt) | ydbA → | pseudogene, autotransporter homolog; interrupted by IS2 and IS30 |
| RA | 1,485,103 | G→C | 5.9% | G681G (GGG→GGC) | hrpA → | putative ATP‑dependent helicase |
| RA | 1,598,527 | T→G | 5.3% | intergenic (‑540/+90) | yneO ← / ← lsrK | pseudogene, AidA homolog/autoinducer‑2 (AI‑2) kinase |
| RA | 1,598,529 | A→T | 5.0% | intergenic (‑542/+88) | yneO ← / ← lsrK | pseudogene, AidA homolog/autoinducer‑2 (AI‑2) kinase |
| RA | 1,599,289 | A→G | 6.2% | A307A (GCT→GCC) | lsrK ← | autoinducer‑2 (AI‑2) kinase |
| RA | 1,708,814 | A→G | 5.3% | A632A (GCA→GCG) | rsxC → | SoxR iron‑sulfur cluster reduction factor component; putative membrane‑associated NADH oxidoreductase of electron transport complex |
| RA | 1,758,834 | C→T | 6.6% | intergenic (‑109/+40) | ldtE ← / ← sufE | murein L,D‑transpeptidase/sulfur acceptor protein |
| RA | 1,787,718 | A→G | 5.3% | I92V (ATC→GTC) | ppsR → | PEP synthase kinase and PEP synthase pyrophosphorylase |
| RA | 1,965,686 | T→C | 5.1% | Q169R (CAG→CGG) | flhB ← | flagellin export apparatus, substrate specificity protein |
| MC JC | 1,978,503 | Δ776 bp | 100% | insB1–insA | insB1, insA | |
| RA | 1,995,364 | A→T | 6.9% | intergenic (‑5/‑454) | uvrY ← / → yecF | response regulator in two‑component regulatory system with BarA/DUF2594 family protein |
| RA | 2,019,460 | G→A | 100% | V359I (GTC→ATC) | fliK → | flagellar hook‑length control protein |
| RA | 2,028,158 | G→C | 7.1% | intergenic (‑141/+30) | yedQ ← / ← yodC | putative membrane‑anchored diguanylate cyclase/uncharacterized protein |
| RA | 2,028,159 | T→A | 7.1% | intergenic (‑142/+29) | yedQ ← / ← yodC | putative membrane‑anchored diguanylate cyclase/uncharacterized protein |
| RA | 2,028,160 | G→C | 7.1% | intergenic (‑143/+28) | yedQ ← / ← yodC | putative membrane‑anchored diguanylate cyclase/uncharacterized protein |
| RA | 2,031,651 | G→A | 8.6% | L223F (CTC→TTC) | dcm ← | DNA cytosine methyltransferase |
| RA | 2,062,354 | T→A | 6.4% | intergenic (+19/+37) | asnV → / ← ldtA | tRNA‑Asn/L,D‑transpeptidase linking Lpp to murein |
| RA | 2,062,355 | T→G | 6.4% | intergenic (+20/+36) | asnV → / ← ldtA | tRNA‑Asn/L,D‑transpeptidase linking Lpp to murein |
| RA | 2,062,356 | C→A | 6.2% | intergenic (+21/+35) | asnV → / ← ldtA | tRNA‑Asn/L,D‑transpeptidase linking Lpp to murein |
| RA | 2,062,357 | T→A | 6.2% | intergenic (+22/+34) | asnV → / ← ldtA | tRNA‑Asn/L,D‑transpeptidase linking Lpp to murein |
| RA | 2,075,232 | G→A | 5.2% | A152T (GCA→ACA) | yeeR → | CP4‑44 prophage; putative membrane protein |
| RA | 2,173,361 | Δ2 bp | 100% | pseudogene (1‑2/442 nt) | gatC ← | pseudogene, galactitol‑specific enzyme IIC component of PTS;transport; Transport of small molecules: Carbohydrates, organic acids, alcohols; PTS system galactitol‑specific enzyme IIC |
| RA | 2,177,234 | C→A | 17.3% | intergenic (‑30/+278) | gatY ← / ← fbaB | D‑tagatose 1,6‑bisphosphate aldolase 2, catalytic subunit/fructose‑bisphosphate aldolase class I |
| RA | 2,177,245 | G→T | 23.2% | intergenic (‑41/+267) | gatY ← / ← fbaB | D‑tagatose 1,6‑bisphosphate aldolase 2, catalytic subunit/fructose‑bisphosphate aldolase class I |
| RA | 2,177,279 | C→A | 16.3% | intergenic (‑75/+233) | gatY ← / ← fbaB | D‑tagatose 1,6‑bisphosphate aldolase 2, catalytic subunit/fructose‑bisphosphate aldolase class I |
| RA | 2,244,999 | C→G | 5.4% | V591L (GTT→CTT) | cirA ← | colicin IA outer membrane receptor and translocator; ferric iron‑catecholate transporter |
| RA | 2,288,368 | T→C | 5.9% | pseudogene (547/2525 nt) | yejO ← | pseudogene, autotransporter outer membrane homology;putative transport; Not classified; putative ATP‑binding component of a transport system |
| RA | 2,304,649 | C→T | 24.4% | intergenic (+256/+459) | eco → / ← mqo | ecotin, a serine protease inhibitor/malate dehydrogenase, FAD/NAD(P)‑binding domain |
| RA | 2,357,915 | C→T | 5.1% | pseudogene (112/198 nt) | ypaA → | pseudogene, C‑terminal fragment, Transposase_31 family |
| RA | 2,370,895 | C→T | 5.4% | A293V (GCG→GTG) | arnD → | undecaprenyl phosphate‑alpha‑L‑ara4FN deformylase |
| JC JC | 2,375,828 | IS186 (+) +4 bp | 100% | coding (132‑135/963 nt) | menC ← | O‑succinylbenzoyl‑CoA synthase |
| RA | 2,383,956 | A→T | 7.9% | intergenic (+32/+39) | elaD → / ← yfbK | protease, capable of cleaving an AMC‑ubiquitin model substrate/Von Willebrand factor domain putative lipoprotein |
| RA | 2,383,959 | A→T | 6.9% | intergenic (+35/+36) | elaD → / ← yfbK | protease, capable of cleaving an AMC‑ubiquitin model substrate/Von Willebrand factor domain putative lipoprotein |
| RA | 2,414,689 | C→G | 5.4% | intergenic (+17/‑58) | ackA → / → pta | acetate kinase A and propionate kinase 2/phosphate acetyltransferase |
| RA | 2,506,790 | C→T | 5.2% | A369T (GCT→ACT) | fryC ← | putative enzyme IIC component of PTS |
| RA | 2,632,584 | A→T | 5.1% | intergenic (‑49/+20) | guaA ← / ← guaB | GMP synthetase (glutamine aminotransferase)/IMP dehydrogenase |
| RA | 2,632,586 | G→C | 5.2% | intergenic (‑51/+18) | guaA ← / ← guaB | GMP synthetase (glutamine aminotransferase)/IMP dehydrogenase |
| RA | 2,632,588 | A→T | 5.4% | intergenic (‑53/+16) | guaA ← / ← guaB | GMP synthetase (glutamine aminotransferase)/IMP dehydrogenase |
| RA | 2,670,992 | T→C | 5.7% | F29L (TTC→CTC) | hcaC → | 3‑phenylpropionate dioxygenase, ferredoxin subunit |
| RA | 2,691,762 | G→A | 6.3% | P1261L (CCG→CTG) | purL ← | phosphoribosylformyl‑glycineamide synthetase |
| RA | 2,724,095 | C→A | 5.3% | intergenic (+13/‑33) | pssA → / → yfiM | phosphatidylserine synthase; CDP‑diacylglycerol‑serine O‑phosphatidyltransferase/putative lipoprotein |
| RA | 2,724,097 | T→A | 5.3% | intergenic (+15/‑31) | pssA → / → yfiM | phosphatidylserine synthase; CDP‑diacylglycerol‑serine O‑phosphatidyltransferase/putative lipoprotein |
| RA | 2,724,099 | T→G | 5.3% | intergenic (+17/‑29) | pssA → / → yfiM | phosphatidylserine synthase; CDP‑diacylglycerol‑serine O‑phosphatidyltransferase/putative lipoprotein |
| RA | 2,787,375 | T→A | 7.3% | pseudogene (979/2253 nt) | ygaQ → | uncharacterized protein; putative enzyme |
| RA | 2,881,055 | G→A | 5.1% | A363V (GCG→GTG) | casC ← | CRISP RNA (crRNA) containing Cascade antiviral complex protein |
| RA | 2,904,212 | G→A | 100% | intergenic (+838/+535) | ygcE → / ← queE | putative kinase/7‑carboxy‑7‑deazaguanine synthase; queosine biosynthesis |
| RA | 3,035,652 | G→A | 6.2% | G210G (GGC→GGT) | prfB ← | peptide chain release factor RF‑2 |
| RA | 3,096,379 | C→T | 5.5% | A187V (GCG→GTG) | yggT → | putative inner membrane protein; compensates for loss in K+ uptake |
| RA | 3,136,632 | C→A | 6.7% | intergenic (‑261/+31) | pitB ← / ← gss | phosphate transporter/glutathionylspermidine amidase and glutathionylspermidine synthetase |
| RA | 3,156,591 | T→G | 5.3% | intergenic (+73/‑32) | yqhD → / → dkgA | aldehyde reductase, NADPH‑dependent/2,5‑diketo‑D‑gluconate reductase A |
| RA | 3,269,969 | A→C | 7.2% | intergenic (+367/+247) | yhaC → / ← rnpB | pentapetide repeats‑related protein/RNase P, M1 RNA component |
| RA | 3,270,082 | A→C | 5.2% | intergenic (+480/+134) | yhaC → / ← rnpB | pentapetide repeats‑related protein/RNase P, M1 RNA component |
| RA | 3,437,908 | T→A | 5.3% | intergenic (+14/‑116) | trkA → / → mscL | NAD‑binding component of TrK potassium transporter/mechanosensitive channel protein, high conductance |
| RA | 3,437,909 | A→T | 5.3% | intergenic (+15/‑115) | trkA → / → mscL | NAD‑binding component of TrK potassium transporter/mechanosensitive channel protein, high conductance |
| RA | 3,437,910 | A→T | 5.3% | intergenic (+16/‑114) | trkA → / → mscL | NAD‑binding component of TrK potassium transporter/mechanosensitive channel protein, high conductance |
| RA | 3,437,911 | T→A | 5.8% | intergenic (+17/‑113) | trkA → / → mscL | NAD‑binding component of TrK potassium transporter/mechanosensitive channel protein, high conductance |
| RA | 3,439,963 | T→C | 7.7% | N13D (AAC→GAC) | rplQ ← | 50S ribosomal subunit protein L17 |
| RA | 3,504,873 | T→A | 20.2% | intergenic (+90/+62) | frlR → / ← yhfS | putative DNA‑binding transcriptional regulator/FNR‑regulated pyridoxal phosphate‑dependent aminotransferase family protein |
| RA | 3,560,455:1 | +G | 100% | intergenic (‑2/+1) | glpR ← / ← glpR | pseudogene, DNA‑binding transcriptional repressor;regulator; Energy metabolism, carbon: Anaerobic respiration; repressor of the glp operon/pseudogene, DNA‑binding transcriptional repressor;regulator; Energy metabolism, carbon: Anaerobic respiration; repressor of the glp operon |
| RA | 3,710,531 | C→T | 5.3% | intergenic (‑56/+268) | eptB ← / ← yhjX | KDO phosphoethanolamine transferase, Ca(2+)‑inducible/pyruvate‑inducible inner membrane protein, putative transporter |
| RA | 3,803,395 | A→G | 5.7% | L248S (TTG→TCG) | waaB ← | lipopolysaccharide 1,6‑galactosyltransferase; UDP‑D‑galactose:(glucosyl)lipopolysaccharide‑1, 6‑D‑galactosyltransferase |
| RA | 3,807,555 | G→T | 5.4% | Q182K (CAG→AAG) | waaQ ← | lipopolysaccharide core biosynthesis protein |
| JC JC | 3,890,075 | IS5 (–) +4 bp | 100% | coding (1346‑1349/1416 nt) | tnaA → | tryptophanase/L‑cysteine desulfhydrase, PLP‑dependent |
| RA | 3,908,507 | T→G | 5.1% | intergenic (‑141/+42) | pstB ← / ← pstA | phosphate ABC transporter ATPase/phosphate ABC transporter permease |
| RA | 3,921,150 | C→T | 5.6% | A14T (GCT→ACT) | atpE ← | F0 sector of membrane‑bound ATP synthase, subunit c |
| RA | 3,927,123 | A→T | 5.1% | intergenic (‑120/‑32) | asnC ← / → asnA | transcriptional activator of asnA; autorepressor/asparagine synthetase A |
| RA | 4,041,216 | T→C | 9.9% | Q73R (CAG→CGG) ‡ | mobB ← | molybdopterin‑guanine dinucleotide biosynthesis protein B |
| RA | 4,041,217 | G→A | 9.9% | Q73* (CAG→TAG) ‡ | mobB ← | molybdopterin‑guanine dinucleotide biosynthesis protein B |
| RA | 4,041,220 | T→C | 9.9% | S72G (AGC→GGC) | mobB ← | molybdopterin‑guanine dinucleotide biosynthesis protein B |
| RA | 4,041,221 | G→A | 9.9% | A71A (GCC→GCT) | mobB ← | molybdopterin‑guanine dinucleotide biosynthesis protein B |
| RA | 4,103,518 | A→G | 5.2% | intergenic (+22/+84) | yiiM → / ← cpxA | 6‑N‑hydroxylaminopurine resistance protein/sensory histidine kinase in two‑component regulatory system with CpxR |
| RA | 4,103,519 | A→C | 5.2% | intergenic (+23/+83) | yiiM → / ← cpxA | 6‑N‑hydroxylaminopurine resistance protein/sensory histidine kinase in two‑component regulatory system with CpxR |
| RA | 4,296,060 | C→T | 26.3% | intergenic (+266/+376) | gltP → / ← yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| RA | 4,296,380:1 | +CG | 100% | intergenic (+586/+56) | gltP → / ← yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| RA | 4,406,129 | T→C | 100% | intergenic (+144/‑61) | purA → / → nsrR | adenylosuccinate synthetase/nitric oxide‑sensitive repressor for NO regulon |
| RA | 4,479,012 | A→T | 5.6% | intergenic (+123/+22) | rraB → / ← yjgM | protein inhibitor of RNase E/GNAT family putative N‑acetyltransferase |
| RA | 4,479,016 | G→C | 5.3% | intergenic (+127/+18) | rraB → / ← yjgM | protein inhibitor of RNase E/GNAT family putative N‑acetyltransferase |
| RA | 4,479,020 | A→T | 5.5% | intergenic (+131/+14) | rraB → / ← yjgM | protein inhibitor of RNase E/GNAT family putative N‑acetyltransferase |
| RA | 4,614,580 | G→A | 9.3% | intergenic (+320/+100) | yjjV → / ← yjjW | putative DNase/putative pyruvate formate lyase activating enzyme |
| JC JC | 4,640,551 | IS1 (–) +9 bp | 100% | intergenic (+9/‑383) | yjjY → / → yjtD | uncharacterized protein/putative methyltransferase |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 772987 | 774214 | 1228 | 48 [47] | [47] 49 | [cydA]–[cydX] | [cydA],cydB,[cydX] |
| * | * | ÷ | NC_000913 | 1037691 | 1039338 | 1648 | 52 [47] | [44] 50 | cbdA–[cbdB] | cbdA,[cbdB] |
| * | * | ÷ | NC_000913 | 1165995 | 1167435 | 1441 | 48 [47] | [47] 48 | ndh | ndh |
| * | * | ÷ | NC_000913 | 3423711–3424234 | 3424551–3424238 | 5–841 | 48 [47] | [47] 49 | [rrfD]–[rrlD] | [rrfD],[rrlD] |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 274695 | NA (NA) | 5 (0.050) | 5/270 | NT | NA | noncoding (455/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | = 274727 | NA (NA) | noncoding (423/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | 1097287 = | 13 (0.130) | 4 (0.040) | 3/262 | NT | 22.7% | intergenic (+458/+278) | ycdU/serX | putative inner membrane protein/tRNA‑Ser |
| ? | NC_000913 | 1097464 = | 15 (0.160) | intergenic (+635/+101) | ycdU/serX | putative inner membrane protein/tRNA‑Ser | |||||
| * | ? | NC_000913 | 1207790 = | 72 (0.710) | 35 (0.390) | 25/246 | NT | 39.0% | coding (290/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | 1209619 = | 46 (0.510) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | = 1207805 | 75 (0.730) | 45 (0.500) | 27/246 | NT | 44.5% | coding (305/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | = 1209602 | 46 (0.510) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | = 1299498 | 0 (0.000) | 87 (0.880) | 54/270 | NT | 100% | intergenic (+253/‑1684) | ychE/oppA | UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein |
| ? | NC_000913 | 1300698 = | 0 (0.000) | intergenic (+1453/‑484) | ychE/oppA | UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein | |||||
| * | ? | NC_000913 | 3046003 = | 86 (0.840) | 6 (0.060) | 3/260 | NT | 7.1% | intergenic (‑102/+165) | ygfF/gcvP | putative NAD(P)‑dependent oxidoreductase/glycine decarboxylase, PLP‑dependent, subunit P of glycine cleavage complex |
| ? | NC_000913 | 3046074 = | 76 (0.800) | intergenic (‑173/+94) | ygfF/gcvP | putative NAD(P)‑dependent oxidoreductase/glycine decarboxylase, PLP‑dependent, subunit P of glycine cleavage complex | |||||
| * | ? | NC_000913 | 3423373 = | 53 (0.520) | 5 (0.050) +ATGT |
3/270 | NT | 8.9% | intergenic (+179/+50) | yhdZ/rrfF | putative amino acid ABC transporter ATPase/5S ribosomal RNA of rrnD operon |
| ? | NC_000913 | 3423672 = | NA (NA) | noncoding (116/120 nt) | rrfD | 5S ribosomal RNA of rrnD operon | |||||
| * | ? | NC_000913 | 3589239 = | 83 (0.810) | 4 (0.040) | 3/262 | NT | 5.3% | coding (789/846 nt) | ugpE | sn‑glycerol‑3‑phosphate ABC transporter permease |
| ? | NC_000913 | 3589345 = | 64 (0.670) | coding (683/846 nt) | ugpE | sn‑glycerol‑3‑phosphate ABC transporter permease | |||||
| * | ? | NC_000913 | = 4040686 | 70 (0.690) | 15 (0.150) +ATGT |
5/270 | NT | 14.6% | intergenic (+50/+220) | rrfA/mobB | 5S ribosomal RNA of rrnA operon/molybdopterin‑guanine dinucleotide biosynthesis protein B |
| ? | NC_000913 | = 4213155 | 110 (1.080) | noncoding (116/120 nt) | rrfE | 5S ribosomal RNA of rrnE operon | |||||
| * | ? | NC_000913 | = 4094350 | 89 (0.870) | 10 (0.140) | 8/196 | NT | 9.9% | noncoding (35/402 nt) | REP299 (repetitive extragenic palindromic) element; contains 9 REP sequences | REP299 (repetitive extragenic palindromic) element; contains 9 REP sequences |
| ? | NC_000913 | 4094719 = | 119 (1.660) | intergenic (‑447/+4) | rhaD/rhaA | rhamnulose‑1‑phosphate aldolase/L‑rhamnose isomerase | |||||
| * | ? | NC_000913 | 4542682 = | 70 (0.690) | 5 (0.050) | 4/260 | NT | 6.3% | intergenic (+49/‑433) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913 | 4542996 = | 83 (0.870) | intergenic (+363/‑119) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||