mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.29.0 revision 8f9c342918e4
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| RA | 24,819 | A→G | D810G (GAC→GGC) | ileS → | isoleucyl‑tRNA synthetase |
| RA | 33,755 | T→C | V980A (GTG→GCG) | carB → | carbamoyl‑phosphate synthase large subunit |
| RA | 34,120 | (T)9→8 | intergenic (+82/‑180) | carB → / → caiF | carbamoyl‑phosphate synthase large subunit/cai operon transcriptional activator |
| RA | 39,079 | C→T | A13T (GCC→ACC) | caiB ← | crotonobetainyl CoA:carnitine CoA transferase |
| RA | 51,996 | C→T | V145V (GTG→GTA) | rsmA ← | 16S rRNA m(6)A1518, m(6)A1519 dimethyltransferase, SAM‑dependent |
| RA | 124,759 | A→G | A581A (GCA→GCG) | aceE → | pyruvate dehydrogenase, decarboxylase component E1, thiamine triphosphate‑binding |
| RA | 158,411 | T→C | N239S (AAC→AGC) | pcnB ← | poly(A) polymerase |
| RA | 158,903 | C→T | G75D (GGC→GAC) | pcnB ← | poly(A) polymerase |
| RA | 216,672 | A→G | V111A (GTC→GCC) | yaeF ← | putative lipoprotein |
| RA | 231,852 | T→C | V244A (GTA→GCA) | yafD → | endo/exonuclease/phosphatase family protein |
| RA | 250,026 | A→G | pseudogene (45/1713 nt) | lfhA ← | pseudogene, flagellar system protein, promoterless fragment; flagellar biosynthesis |
| MC JC | 257,908 | Δ776 bp | [crl] | [crl] | |
| RA | 267,378 | A→G | W210R (TGG→CGG) | yafZ ← | CP4‑6 prophage; conserved protein |
| RA | 268,643 | C→T | A106A (GCG→GCA) | ykfA ← | CP4‑6 prophage; putative GTP‑binding protein |
| RA | 276,808 | T→C | C32R (TGT→CGT) | mmuM → | CP4‑6 prophage; S‑methylmethionine:homocysteine methyltransferase |
| RA | 282,361 | C→T | G28G (GGC→GGT) | yagE → | 2‑keto‑3‑deoxy gluconate (KDG) aldolase; CP4‑6 prophage |
| RA | 304,787 | G→A | P140L (CCG→CTG) | ecpE ← | ECP production pilus chaperone |
| RA | 356,227 | Δ1 bp | coding (57/1284 nt) | codA → | cytosine/isoguanine deaminase |
| RA | 380,022 | (G)10→11 | intergenic (‑141/+47) | frmR ← / ← yaiO | regulator protein that represses frmRAB operon/outer membrane protein |
| RA | 384,316 | C→G | A101P (GCC→CCC) | yaiS ← | putative PIG‑L family deacetylase |
| RA | 393,298 | T→C | pseudogene (329/1449 nt) | yaiT → | pseudogene, autotransporter family;putative structure; Not classified; interrupted by IS3; putative flagellin structural protein |
| RA | 409,043 | T→C | intergenic (+93/+65) | ykiA → / ← rdgC | pseudogene/nucleoid‑associated ssDNA and dsDNA binding protein; competitive inhibitor of RecA function |
| RA | 411,433 | A→G | L350P (CTG→CCG) | araJ ← | L‑arabinose‑inducible putative transporter, MFS family |
| RA | 415,168 | C→T | A196T (GCC→ACC) | sbcC ← | exonuclease, dsDNA, ATP‑dependent |
| RA | 447,954 | A→G | I31I (ATT→ATC) | cyoD ← | cytochrome o ubiquinol oxidase subunit IV |
| RA | 448,605 | T→C | H19R (CAC→CGC) | cyoC ← | cytochrome o ubiquinol oxidase subunit III |
| RA | 459,446 | T→C | S187P (TCC→CCC) | lon → | DNA‑binding ATP‑dependent protease La |
| RA | 471,711 | A→G | N359S (AAC→AGC) | mdlB → | putative multidrug ABC transporter ATPase |
| RA | 547,005 | A→G | D109G (GAC→GGC) | fdrA → | putative NAD(P)‑binding acyl‑CoA synthetase |
| RA | 551,295 | C→T | T286M (ACG→ATG) | ybcF → | putative carbonate kinase |
| RA | 562,582 | A→G | T83A (ACT→GCT) | sfmH → | FimA homolog, function unknown |
| RA | 602,667 | G→A | D237N (GAT→AAT) | pheP → | phenylalanine transporter |
| RA | 624,671 | A→G | intergenic (‑161/‑214) | fepB ← / → entC | ferrienterobactin ABC transporter periplasmic binding protein/isochorismate synthase 1 |
| RA | 641,704 | A→G | V55A (GTG→GCG) | uspG ← | universal stress protein UP12 |
| RA | 642,942 | C→T | G285G (GGC→GGT) | ybdR → | putative Zn‑dependent NAD(P)‑binding oxidoreductase |
| RA | 648,555 | A→G | R339R (CGT→CGC) | citF ← | citrate lyase, citrate‑ACP transferase (alpha) subunit |
| RA | 649,250 | C→T | V108I (GTA→ATA) | citF ← | citrate lyase, citrate‑ACP transferase (alpha) subunit |
| RA | 649,679 | A→G | V271A (GTG→GCG) | citE ← | citrate lyase, citryl‑ACP lyase (beta) subunit |
| RA | 671,974 | G→A | D71D (GAC→GAT) | lptE ← | LPS assembly OM complex LptDE, lipoprotein component |
| RA | 748,804 | T→C | D60G (GAC→GGC) | ybgO ← | putative fimbrial protein |
| RA | 789,246 | A→G | V245A (GTC→GCC) | galK ← | galactokinase |
| RA | 914,373 | A→G | V162A (GTC→GCC) | ybjE ← | putative transporter |
| JC JC | 944,912 | Δ1 bp :: IS186 (+) +6 bp :: Δ1 bp | intergenic (+16/+14) | dmsC → / ← ycaC | dimethyl sulfoxide reductase, anaerobic, subunit C/putative isochorismatase family hydrolase |
| RA | 953,431 | A→G | S42P (TCC→CCC) | pflB ← | formate C‑acetyltransferase 1, anaerobic; pyruvate formate‑lyase 1 |
| RA | 1,022,355 | A→G | L510S (TTA→TCA) | yccS ← | putative transporter, FUSC superfamily inner membrane protein |
| RA | 1,038,253 | A→G | S172G (AGC→GGC) | cbdA → | cytochrome bd‑II oxidase, subunit I |
| RA | 1,070,398 | A→G | R186R (CGT→CGC) | rutE ← | putative malonic semialdehyde reductase |
| RA | 1,091,158 | T→C | T378A (ACC→GCC) | pgaA ← | biofilm adhesin polysaccharide PGA secretin; OM porin; poly‑beta‑1,6‑N‑acetyl‑D‑glucosamine export protein |
| RA | 1,097,218 | (G)7→8 | intergenic (+389/+347) | ycdU → / ← serX | putative inner membrane protein/tRNA‑Ser |
| RA | 1,109,893 | C→T | R187C (CGC→TGC) | opgG → | OPG biosynthetic periplasmic beta‑1,6 branching glycosyltransferase |
| RA | 1,124,108 | (G)6→7 | intergenic (‑54/+10) | grxB ← / ← mdtH | glutaredoxin 2 (Grx2)/multidrug resistance efflux transporter conferring overexpression resistance to norfloxacin and enoxacin |
| RA | 1,142,200 | C→T | R723H (CGT→CAT) | rne ← | endoribonuclease; RNA‑binding protein;RNA degradosome binding protein |
| RA | 1,232,757 | T→C | T92A (ACC→GCC) | dsbB ← | oxidoreductase that catalyzes reoxidation of DsbA protein disulfide isomerase I |
| RA | 1,257,682 | A→G | V44A (GTA→GCA) | ychF ← | catalase inhibitor protein; ATPase, K+‑dependent, ribosome‑associated |
| RA | 1,274,435 | A→G | T218A (ACA→GCA) | ychO → | putative invasin |
| RA | 1,307,511 | A→G | W379R (TGG→CGG) | clsA ← | cardiolipin synthase 1 |
| RA | 1,356,140 | T→C | N324S (AAC→AGC) | sapA ← | antimicrobial peptide transport ABC transporter periplasmic binding protein |
| JC JC | 1,393,457 | IS186 (–) +5 bp | coding (231‑235/1614 nt) | mppA → | murein tripeptide (L‑ala‑gamma‑D‑glutamyl‑meso‑DAP) transporter subunit |
| RA | 1,400,721 | A→G | F351F (TTT→TTC) | abgT ← | p‑aminobenzoyl‑glutamate transporter; membrane protein |
| RA | 1,405,951 | C→T | intergenic (+302/‑28) | abgR → / → smrA | putative DNA‑binding transcriptional regulator of abgABT operon/DNA endonuclease |
| RA | 1,429,684 | A→G | S212S (TCA→TCG) | stfR → | Rac prophage; putative tail fiber protein |
| RA | 1,496,196 | A→G | R303R (CGA→CGG) | ydcJ → | putative metalloenzyme |
| RA | 1,568,898 | A→G | intergenic (‑75/+56) | yddW ← / ← gadC | liprotein, glycosyl hydrolase homolog/glutamate:gamma‑aminobutyric acid antiporter |
| RA | 1,636,093 | G→A | pseudogene (275/528 nt) | nohQ ← | pseudogene, Qin prophage; Phage DNA packaging protein Nu1 family;Phage or Prophage Related; DNA packaging protein NU1 homolog from lambdoid prophage Qin |
| RA | 1,670,120 | T→C | V141A (GTG→GCG) | ynfM → | putative arabinose efflux transporter |
| RA | 1,686,077 | A→G | L171P (CTG→CCG) | fumC ← | fumarate hydratase (fumarase C),aerobic Class II |
| RA | 1,696,856 | T→C | D66G (GAC→GGC) | uidR ← | transcriptional repressor |
| RA | 1,756,709 | G→A | V338M (GTG→ATG) | pykF → | pyruvate kinase I |
| RA | 1,768,945 | A→G | intergenic (‑260/‑129) | ydiJ ← / → ydiK | putative FAD‑linked oxidoreductase/UPF0118 family inner membrane protein |
| RA | 1,787,381 | A→G | intergenic (‑269/‑64) | ppsA ← / → ppsR | phosphoenolpyruvate synthase/PEP synthase kinase and PEP synthase pyrophosphorylase |
| RA | 1,811,829 | T→C | V299A (GTG→GCG) | ydjN → | putative transporter |
| RA | 1,840,491 | A→G | H342R (CAC→CGC) | ynjE → | molybdopterin synthase sulfurtransferase |
| RA | 1,931,374 | A→G | Q165R (CAG→CGG) | purT → | phosphoribosylglycinamide formyltransferase 2 |
| RA | 1,941,604 | G→A | A11V (GCG→GTG) | mepM ← | murein DD‑endopeptidase, space‑maker hydrolase, septation protein |
| RA | 1,951,184 | G→A | R118H (CGC→CAC) | yecD → | isochorismatase family protein |
| RA | 1,969,428 | T→C | A519A (GCA→GCG) | tap ← | methyl‑accepting protein IV |
| MC JC | 1,978,503 | Δ776 bp | insB1–insA | insB1, insA | |
| RA | 2,032,972 | C→T | T36T (ACG→ACA) | yedJ ← | putative HD superfamily phosphohydrolase |
| RA | 2,042,112 | T→C | intergenic (+87/‑256) | zinT → / → yodB | zinc and cadmium binding protein, periplasmic/cytochrome b561 homolog |
| RA | 2,049,656 | T→C | A1573A (GCT→GCC) | yeeJ → | putative adhesin |
| RA | 2,074,695 | A→G | intergenic (+37/‑84) | flu → / → yeeR | CP4‑44 prophage; antigen 43 (Ag43) phase‑variable biofilm formation autotransporter/CP4‑44 prophage; putative membrane protein |
| RA | 2,088,853 | T→C | V92V (GTA→GTG) | yeeZ ← | putative epimerase |
| RA | 2,130,545 | G→A | R112C (CGC→TGC) | wcaD ← | putative colanic acid polymerase |
| RA | 2,150,746 | T→C | G80G (GGA→GGG) | yegI ← | protein kinase‑related putative non‑specific DNA‑binding protein |
| RA | 2,168,019 | G→A | V96V (GTC→GTT) | yegR ← | uncharacterized protein |
| RA | 2,173,363 | Δ2 bp | intergenic (‑1/+1) | gatC ← / ← gatC | pseudogene, galactitol‑specific enzyme IIC component of PTS;transport; Transport of small molecules: Carbohydrates, organic acids, alcohols; PTS system galactitol‑specific enzyme IIC/pseudogene, galactitol‑specific enzyme IIC component of PTS;transport; Transport of small molecules: Carbohydrates, organic acids, alcohols; PTS system galactitol‑specific enzyme IIC |
| RA | 2,178,383 | C→T | R61H (CGT→CAT) | fbaB ← | fructose‑bisphosphate aldolase class I |
| RA | 2,197,150 | T→C | pseudogene (677/2847 nt) | yehH → | DUF4132 family pseudogene; defective yehI paralog; molybdate metabolism regulator, first fragment; molybdate metabolism regulator, second fragment 2; yehI' molR mutations have phenotypes and the N‑terminal molR fragment of yehI' may be expressed and may have retained or evolved MolR function |
| RA | 2,209,024 | T→C | L353P (CTG→CCG) | yehP → | VMA domain putative YehL ATPase stimulator |
| RA | 2,221,366 | T→C | K208K (AAA→AAG) | bglX ← | beta‑D‑glucoside glucohydrolase, periplasmic |
| RA | 2,224,823 | A→G | A16A (GCT→GCC) | pbpG ← | D‑alanyl‑D‑alanine endopeptidase |
| RA | 2,232,230 | T→C | C129C (TGT→TGC) | cdd → | cytidine/deoxycytidine deaminase |
| RA | 2,306,693 | G→A | A21V (GCG→GTG) | mqo ← | malate dehydrogenase, FAD/NAD(P)‑binding domain |
| RA | 2,346,802 | G→A | A646A (GCG→GCA) | nrdA → | ribonucleoside‑diphosphate reductase 1, alpha subunit |
| RA | 2,366,486 | G→A | A187T (GCT→ACT) | arnB → | uridine 5'‑(beta‑1‑threo‑pentapyranosyl‑4‑ulose diphosphate) aminotransferase, PLP‑dependent |
| RA | 2,376,592 | A→G | G76G (GGT→GGC) | menB ← | dihydroxynaphthoic acid synthetase |
| RA | 2,380,055 | T→C | T197A (ACT→GCT) | menF ← | isochorismate synthase 2 |
| RA | 2,386,502 | T→C | S215P (TCC→CCC) | yfbL → | putative M28A family peptidase |
| RA | 2,438,860 | A→G | D304G (GAC→GGC) | flk → | putative flagella assembly protein |
| RA | 2,448,157 | T→C | N95S (AAC→AGC) | prmB ← | N5‑glutamine methyltransferase |
| RA | 2,474,212 | A→G | T61A (ACT→GCT) | yfdQ → | CPS‑53 (KpLE1) prophage; uncharacterized protein |
| RA | 2,503,689 | A→G | I266T (ATT→ACT) | fryA ← | putative PTS enzyme: Hpr, enzyme I and IIA components |
| RA | 2,511,901 | A→G | V269A (GTT→GCT) | mntH ← | manganese/divalent cation transporter |
| RA | 2,559,936 | T→C | V360A (GTC→GCC) | intZ → | CPZ‑55 prophage; putative phage integrase |
| RA | 2,704,016 | A→G | T16T (ACT→ACC) | rnc ← | RNase III |
| RA | 2,715,479 | G→A | T19T (ACG→ACA) | eamB → | cysteine and O‑acetylserine exporter |
| RA | 2,720,149 | T→C | L66S (TTG→TCG) | pka → | protein lysine acetyltransferase |
| RA | 2,762,176 | C→T | V455V (GTG→GTA) | yfjK ← | radiation resistance protein; DEAD/H helicase‑like protein; CP4‑57 putative defective prophage |
| RA | 2,786,205 | T→C | intergenic (‑368/‑192) | ileY ← / → ygaQ | tRNA‑Ile/uncharacterized protein; putative enzyme |
| RA | 2,794,796 | G→A | E182K (GAA→AAA) | gabP → | gamma‑aminobutyrate transporter |
| RA | 2,799,269 | A→G | M36V (ATG→GTG) | alaE → | alanine exporter, alanine‑inducible, stress‑responsive |
| RA | 2,809,774 | (T)7→6 | coding (158/738 nt) | ygaZ → | putative L‑valine exporter, norvaline resistance protein |
| RA | 2,894,005 | G→A | R29R (CGG→CGA) | ygcO → | putative 4Fe‑4S cluster‑containing protein |
| RA | 2,912,885 | A→G | I256T (ATC→ACC) | relA ← | (p)ppGpp synthetase I/GTP pyrophosphokinase |
| RA | 2,935,849 | G→A | C89Y (TGC→TAC) | fucI → | L‑fucose isomerase |
| RA | 3,005,111 | A→G | S226P (TCA→CCA) | ygeV ← | putative sigma‑54‑interacting transcriptional activator |
| RA | 3,009,378 | A→G | E205E (GAA→GAG) | ygeY → | putative peptidase |
| RA | 3,061,828 | G→A | E327K (GAA→AAA) | scpA → | methylmalonyl‑CoA mutase |
| RA | 3,062,799 | G→A | T650T (ACG→ACA) | scpA → | methylmalonyl‑CoA mutase |
| RA | 3,101,039 | (C)7→8 | coding (585/720 nt) | yggN ← | DUF2884 family putative periplasmic protein |
| RA | 3,157,770 | A→G | T41A (ACT→GCT) | yqhG → | DUF3828 family putative periplasmic protein |
| RA | 3,264,789 | C→T | G77S (GGC→AGC) | tdcC ← | L‑threonine/L‑serine transporter |
| RA | 3,280,131 | A→G | E406E (GAA→GAG) | kbaZ → | tagatose 6‑phosphate aldolase 1, kbaZ subunit |
| RA | 3,335,436 | A→G | I353I (ATT→ATC) | murA ← | UDP‑N‑acetylglucosamine 1‑carboxyvinyltransferase |
| RA | 3,339,346 | T→C | V240V (GTA→GTG) | mlaF ← | ABC transporter maintaining OM lipid asymmetry, ATP‑binding protein |
| RA | 3,343,858 | T→C | V160A (GTA→GCA) | lptA → | lipopolysaccharide export ABC transporter periplasmic binding protein; Lipid A binding protein; LPS export and assembly protein |
| RA | 3,373,078 | T→C | T167A (ACC→GCC) | nanA ← | N‑acetylneuraminate lyase |
| RA | 3,376,927 | A→G | L165P (CTG→CCG) | sspA ← | stringent starvation protein A, phage P1 late gene activator, RNAP‑associated acid‑resistance protein, inactive glutathione S‑transferase homolog |
| RA | 3,386,861 | A→G | L443P (CTG→CCG) | aaeB ← | p‑hydroxybenzoic acid efflux system component |
| RA | 3,423,401 | A→G | intergenic (+207/+22) | yhdZ → / ← rrfF | putative amino acid ABC transporter ATPase/5S ribosomal RNA of rrnD operon |
| RA | 3,431,635 | G→A | R110W (CGG→TGG) | yrdD ← | ssDNA‑binding protein, function unknown |
| RA | 3,438,469 | (A)6→5 | coding (181/219 nt) | arfA ← | alternate ribosome‑rescue factor A |
| RA | 3,505,488 | A→G | V178A (GTG→GCG) | yhfS ← | FNR‑regulated pyridoxal phosphate‑dependent aminotransferase family protein |
| RA | 3,560,455 | +G | intergenic (‑2/+1) | glpR ← / ← glpR | pseudogene, DNA‑binding transcriptional repressor;regulator; Energy metabolism, carbon: Anaerobic respiration; repressor of the glp operon/pseudogene, DNA‑binding transcriptional repressor;regulator; Energy metabolism, carbon: Anaerobic respiration; repressor of the glp operon |
| RA | 3,575,211 | T→C | A47A (GCT→GCC) | yhgN → | UPF0056 family inner membrane protein |
| RA | 3,592,873 | T→C | T189A (ACT→GCT) | livF ← | branched‑chain amino acid ABC transporter ATPase |
| RA | 3,619,262 | C→T | A24V (GCC→GTC) | rhsB → | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| RA | 3,622,455 | T→C | S1088S (AGT→AGC) | rhsB → | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| RA | 3,623,539 | T→C | G47G (GGT→GGC) | yhhH → | putative NTF2 fold immunity protein for polymorphic toxin RhsB |
| RA | 3,645,539 | G→A | S52N (AGC→AAC) | rlmJ → | 23S rRNA m(6)A2030 methyltransferase, SAM‑dependent |
| RA | 3,783,056 | C→T | A202A (GCG→GCA) | gpsA ← | glycerol‑3‑phosphate dehydrogenase (NAD+) |
| RA | 3,811,334 | A→G | R28R (CGT→CGC) | rpmG ← | 50S ribosomal subunit protein L33 |
| RA | 3,815,808 | (A)8→7 | intergenic (‑40/+26) | pyrE ← / ← rph | orotate phosphoribosyltransferase/ribonuclease PH (defective);enzyme; Degradation of RNA; RNase PH |
| RA | 3,816,407 | G→A | pseudogene (143/669 nt) | rph ← | ribonuclease PH (defective);enzyme; Degradation of RNA; RNase PH |
| RA | 3,819,035 | T→C | Y54Y (TAT→TAC) | yicG → | UPF0126 family inner membrane protein |
| RA | 3,840,839 | A→G | W301R (TGG→CGG) | nepI ← | putative transporter |
| RA | 3,856,193 | G→A | L39F (CTT→TTT) | yidH ← | DUF202 family inner membrane protein |
| RA | 3,899,764 | C→T | G272S (GGC→AGC) | yieL ← | putative xylanase |
| RA | 3,929,378 | A→G | C76R (TGC→CGC) | viaA ← | stimulator of RavA ATPase activity; von Willebrand factor domain protein |
| RA | 3,931,561 | (G)7→8 | coding (246/1869 nt) | kup → | potassium transporter |
| RA | 4,040,701 | A→G | intergenic (+65/+205) | rrfA → / ← mobB | 5S ribosomal RNA of rrnA operon/molybdopterin‑guanine dinucleotide biosynthesis protein B |
| RA | 4,128,197 | T→C | T67A (ACC→GCC) | metJ ← | transcriptional repressor, S‑adenosylmethionine‑binding |
| RA | 4,150,087 | A→G | V60A (GTA→GCA) | eptC ← | LPS heptose I phosphoethanolamine transferase |
| RA | 4,150,739 | A→G | V787A (GTA→GCA) | ppc ← | phosphoenolpyruvate carboxylase |
| RA | 4,223,586 | C→T | V15I (GTT→ATT) | iclR ← | transcriptional repressor |
| RA | 4,254,807 | C→T | D554N (GAT→AAT) | plsB ← | glycerol‑3‑phosphate O‑acyltransferase |
| RA | 4,270,398 | A→G | N54S (AAC→AGC) | yjbQ → | thiamine phosphate synthase |
| RA | 4,296,381 | +GC | intergenic (+587/+55) | gltP → / ← yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| RA | 4,337,788 | A→G | S48P (TCC→CCC) | adiY ← | adi system transcriptional activator |
| RA | 4,390,985 | C→T | E175E (GAG→GAA) | rsgA ← | ribosome small subunit‑dependent GTPase A |
| RA | 4,399,151 | Δ1 bp | coding (1740/1848 nt) | mutL → | methyl‑directed mismatch repair protein |
| RA | 4,408,885 | (A)6→5 | coding (2232/2442 nt) | rnr → | exoribonuclease R, RNase R |
| RA | 4,410,053 | (T)9→8 | intergenic (+47/‑80) | rlmB → / → yjfI | 23S rRNA mG2251 2'‑O‑ribose methyltransferase, SAM‑dependent/DUF2170 family protein |
| RA | 4,431,878 | T→C | T36A (ACG→GCG) | ytfE ← | iron‑sulfur cluster repair protein RIC |
| RA | 4,503,797 | A→G | intergenic (‑366/‑261) | insG ← / → yjhB | IS4 transposase/putative MFS transporter, membrane protein |
| RA | 4,529,852 | A→G | V131A (GTG→GCG) | sgcC ← | putative PTS system EIIC permease component |
| RA | 4,550,829 | C→T | L156L (CTG→CTA) | gntP ← | fructuronate transporter |
| RA | 4,606,215 | (G)8→9 | noncoding (72/87 nt) | leuP ← | tRNA‑Leu |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3423703–3424234 | 3424583–3424238 | 5–881 | 89 [84] | [84] 86 | [rrfD]–[rrlD] | [rrfD], [rrlD] |
| * | * | ÷ | NC_000913 | 3944107–3946170 | 3946170 | 1–2064 | 87 [85] | [85] 87 | rrlC | 23S ribosomal RNA of rrnC operon |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1299498 | 0 (0.000) | 125 (0.920) | 108/290 | 0.1 | 100% | intergenic (+253/‑1684) | ychE/oppA | UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein |
| ? | NC_000913 | 1300698 = | 0 (0.000) | intergenic (+1453/‑484) | ychE/oppA | UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein | |||||