mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP006881 | 30,182 | C→T | 100% | intergenic (+147/‑96) | U712_00120 → / → U712_20865 | Sigma‑K factor‑processing regulatory protein BofA/16S ribosomal RNA |
| RA | CP006881 | 125,619 | C→T | 100% | R21C (CGT→TGT) | U712_00560 → | DNA‑directed RNA polymerase subunit beta' |
| RA | CP006881 | 229,047 | A→C | 13.6% | V104G (GTC→GGC) | U712_01060 ← | putative beta‑lactamase ybxI |
| RA | CP006881 | 287,287 | A→G | 7.5% | F47L (TTT→CTT) | U712_01365 ← | Pyrrolidone‑carboxylate peptidase |
| RA | CP006881 | 304,812 | G→A | 5.4% | E126E (GAG→GAA) | U712_01455 → | Response regulator aspartate phosphatase J |
| RA | CP006881 | 455,890 | T→G | 14.9% | intergenic (+160/‑170) | U712_02095 → / → U712_02100 | Hypothetical Protein/Uncharacterized protein YcsE |
| RA | CP006881 | 489,102 | A→C | 18.4% | G136G (GGA→GGC) | U712_02295 → | Putative acyl‑CoA dehydrogenase YdbM |
| RA | CP006881 | 549,847 | T→G | 13.8% | K86N (AAA→AAC) | U712_02665 ← | Uncharacterized protein ydfG |
| RA | CP006881 | 790,348 | T→G | 19.2% | intergenic (‑103/‑141) | U712_03825 ← / → U712_03830 | Uncharacterized protein yfmB/General stress protein 17M |
| RA | CP006881 | 804,403 | T→G | 30.1% | C238W (TGT→TGG) | U712_03910 → | PTS system N‑acetylglucosamine‑specific EIICB component |
| RA | CP006881 | 824,073 | A→G | 12.1% | F152S (TTT→TCT) | U712_03980 ← | putative MFS‑type transporter yfkL |
| RA | CP006881 | 832,829 | C→A | 8.2% | G79G (GGC→GGA) | U712_04045 → | putative polysaccharide deacetylase pdaA |
| RA | CP006881 | 856,396 | C→T | 7.8% | T383I (ACA→ATA) | U712_04155 → | PTS system maltose‑specific EIICB component |
| RA | CP006881 | 868,570 | A→G | 6.0% | K176R (AAA→AGA) | U712_04210 → | putative transcriptional regulatory protein yfiK |
| RA | CP006881 | 868,838 | G→T | 16.7% | E46* (GAG→TAG) | U712_04215 → | Hypothetical Protein |
| RA | CP006881 | 892,866 | T→C | 6.0% | P36P (CCT→CCC) | U712_04365 → | AB hydrolase superfamily protein yfhM |
| RA | CP006881 | 923,139 | G→T | 5.2% | R294R (CGC→CGA) | U712_04490 ← | Vegetative catalase |
| RA | CP006881 | 924,066:1 | +A | 100% | intergenic (‑46/‑233) | U712_04490 ← / → U712_04495 | Vegetative catalase/Aliphatic sulfonates import ATP‑binding protein SsuB |
| RA | CP006881 | 967,097 | A→G | 5.5% | G240G (GGA→GGG) | U712_04730 → | Glycerol kinase |
| RA | CP006881 | 1,011,322 | T→G | 20.8% | V406G (GTT→GGT) | U712_04945 → | putative multidrug resistance ABC transporter ATP‑binding/permease protein YheH |
| RA | CP006881 | 1,069,797 | T→G | 28.9% | R80R (CGT→CGG) | U712_05265 → | Putative quinone oxidoreductase YhfP |
| RA | CP006881 | 1,118,384 | A→G | 5.7% | K521R (AAA→AGA) | U712_05510 → | Cell wall‑associated protease |
| RA | CP006881 | 1,426,283 | T→A | 7.0% | V83V (GTA→GTT) | U712_07325 ← | putative N‑acetyltransferase YkwB |
| RA | CP006881 | 1,483,465 | G→C | 7.1% | E265Q (GAA→CAA) | U712_07615 → | Putative gamma‑glutamylcyclotransferase ykqA |
| RA | CP006881 | 1,528,836 | C→A | 23.0% | intergenic (‑89/‑51) | U712_07870 ← / → U712_07875 | Uncharacterized protein ylbA/Uncharacterized protein ylbB |
| RA | CP006881 | 1,529,894 | A→T | 7.8% | N175Y (AAT→TAT) | U712_07880 → | putative membrane protein ylbC |
| RA | CP006881 | 1,590,014 | C→T | 6.0% | S10F (TCT→TTT) | U712_08180 → | Dihydroorotate dehydrogenase B (NAD(+)), electron transfer subunit |
| RA | CP006881 | 1,653,382 | A→C | 11.9% | T76P (ACG→CCG) | U712_08495 → | GTP‑sensing transcriptional pleiotropic repressor CodY |
| RA | CP006881 | 1,653,773 | T→G | 10.7% | I206S (ATT→AGT) | U712_08495 → | GTP‑sensing transcriptional pleiotropic repressor CodY |
| RA | CP006881 | 1,663,565 | G→A | 100% | G116R (GGG→AGG) | U712_08555 → | Flagellar basal‑body rod protein flgG |
| RA | CP006881 | 1,672,787 | G→T | 30.4% | M1M (ATG→ATT) † | U712_08615 → | Flagellar biosynthesis protein flhF |
| RA | CP006881 | 1,737,597 | G→A | 7.4% | E63K (GAA→AAA) | U712_08920 → | Uncharacterized protein ymcA |
| RA | CP006881 | 1,743,542 | Δ1 bp | 5.1% | intergenic (+285/+113) | U712_08935 → / ← U712_08940 | DNA mismatch repair protein mutL/Uncharacterized protein ymzD |
| RA | CP006881 | 1,986,559 | G→A | 5.0% | T90I (ACA→ATA) | U712_09815 ← | UPF0700 transmembrane protein yoaK |
| RA | CP006881 | 2,071,625 | G→T | 32.3% | intergenic (‑252/‑23) | U712_10240 ← / → U712_10245 | Uncharacterized protein yojJ/putative multidrug resistance protein norM |
| RA | CP006881 | 2,181,354 | A→T | 11.8% | L124L (CTT→CTA) | U712_10920 ← | Menaquinol‑cytochrome c reductase cytochrome b/c subunit |
| RA | CP006881 | 2,181,363 | C→A | 12.2% | A121A (GCG→GCT) | U712_10920 ← | Menaquinol‑cytochrome c reductase cytochrome b/c subunit |
| RA | CP006881 | 2,181,378 | G→C | 12.2% | G116G (GGC→GGG) | U712_10920 ← | Menaquinol‑cytochrome c reductase cytochrome b/c subunit |
| RA | CP006881 | 2,181,390 | T→A | 12.4% | G112G (GGA→GGT) | U712_10920 ← | Menaquinol‑cytochrome c reductase cytochrome b/c subunit |
| RA | CP006881 | 2,181,393 | C→T | 13.8% | P111P (CCG→CCA) | U712_10920 ← | Menaquinol‑cytochrome c reductase cytochrome b/c subunit |
| RA | CP006881 | 2,248,812 | T→C | 5.2% | N134D (AAT→GAT) | U712_11310 ← | Riboflavin biosynthesis protein RibD |
| RA | CP006881 | 2,260,497 | A→C | 24.0% | G22G (GGT→GGG) | U712_11390 ← | Stage V sporulation protein AB |
| RA | CP006881 | 2,364,158 | T→C | 6.8% | K195K (AAA→AAG) | U712_11985 ← | putative glycine dehydrogenase [decarboxylating] subunit 2 |
| RA | CP006881 | 2,413,763 | C→G | 6.5% | L77V (CTC→GTC) | U712_12290 → | Uncharacterized protein yqfQ |
| RA | CP006881 | 2,472,546 | G→A | 7.7% | A26V (GCA→GTA) | U712_12615 ← | Putative DNA recombinase |
| RA | CP006881 | 2,501,854 | A→T | 7.0% | I48N (ATT→AAT) | U712_12795 ← | Uncharacterized protein yqbE |
| RA | CP006881 | 2,644,470 | T→G | 14.1% | N43H (AAC→CAC) | U712_13605 ← | Uncharacterized protein yrvC |
| RA | CP006881 | 2,704,500 | C→T | 6.0% | R315H (CGC→CAC) | U712_13925 ← | Trigger factor |
| RA | CP006881 | 2,729,168 | A→G | 10.2% | F525F (TTT→TTC) | U712_14070 ← | UvrABC system protein C |
| RA | CP006881 | 2,733,420 | A→G | 9.1% | T259T (ACT→ACC) | U712_14100 ← | Electron transfer flavoprotein subunit alpha |
| RA | CP006881 | 2,759,964 | A→T | 7.6% | I289N (ATT→AAT) | U712_14220 ← | putative arabinose‑binding protein |
| RA | CP006881 | 2,801,996 | G→A | 100% | A327T (GCC→ACC) | U712_14440 → | UPF0118 membrane protein ytvI |
| RA | CP006881 | 2,911,596 | A→G | 6.3% | S317P (TCC→CCC) | U712_15005 ← | L‑Lysine‑8‑amino‑7‑oxononanoate aminotransferase |
| RA | CP006881 | 2,919,672 | A→T | 5.9% | R313* (AGA→TGA) | U712_15040 → | Alpha‑galactosidase |
| RA | CP006881 | 3,002,212 | T→C | 5.2% | I241V (ATC→GTC) | U712_15425 ← | Alcohol dehydrogenase |
| RA | CP006881 | 3,024,644 | A→T | 8.5% | I456I (ATT→ATA) | U712_15530 ← | Methyl‑accepting chemotaxis protein mcpA |
| RA | CP006881 | 3,030,890 | G→A | 9.2% | W149* (TGG→TAG) | U712_15545 → | Protein‑glutamine gamma‑glutamyltransferase |
| RA | CP006881 | 3,151,923 | G→A | 10.7% | R303H (CGC→CAC) | U712_16180 → | Uric acid degradation bifunctional protein PucL |
| RA | CP006881 | 3,159,200 | A→G | 8.9% | L357L (CTT→CTC) | U712_16220 ← | Purine catabolism protein PucG |
| RA | CP006881 | 3,175,196 | T→A | 7.7% | N38I (AAT→ATT) | U712_16305 ← | NifU‑like protein |
| RA | CP006881 | 3,186,703 | T→A | 19.4% | E389V (GAA→GTA) ‡ | U712_16400 ← | 3‑ketoacyl‑CoA thiolase |
| RA | CP006881 | 3,186,704 | C→A | 23.0% | E389* (GAA→TAA) ‡ | U712_16400 ← | 3‑ketoacyl‑CoA thiolase |
| RA | CP006881 | 3,370,333 | C→G | 7.0% | A243P (GCT→CCT) | U712_17315 ← | Maltodextrin transport system permease protein mdxG |
| RA | CP006881 | 3,399,009 | T→A | 5.8% | D270V (GAT→GTT) | U712_17445 ← | Putative uncharacterized protein yvcB |
| RA | CP006881 | 3,437,391 | G→C | 10.5% | D192H (GAC→CAC) ‡ | U712_17650 → | putative MFS‑type transporter yvkA |
| RA | CP006881 | 3,437,392 | A→C | 13.0% | D192A (GAC→GCC) ‡ | U712_17650 → | putative MFS‑type transporter yvkA |
| RA | CP006881 | 3,444,703 | A→C | 19.7% | V43G (GTC→GGC) | U712_17685 ← | UPF0750 membrane protein yvjA |
| RA | CP006881 | 3,538,273 | C→T | 6.3% | G98E (GGA→GAA) | U712_18120 ← | Putative gamma‑glutamyltransferase ywrD |
| RA | CP006881 | 3,578,466 | Δ1 bp | 100% | intergenic (‑59/‑76) | U712_18365 ← / → U712_18370 | Stage II sporulation protein Q/Putative phosphinothricin acetyltransferase YwnH |
| RA | CP006881 | 3,579,785 | Δ1 bp | 100% | coding (73/132 nt) | U712_18380 → | Hypothetical Protein |
| RA | CP006881 | 3,602,030 | T→G | 19.8% | Q404H (CAA→CAC) | U712_18540 ← | ATP synthase subunit alpha |
| RA | CP006881 | 3,610,156 | G→C | 18.4% | intergenic (‑44/+32) | U712_18595 ← / ← U712_18600 | Low molecular weight protein‑tyrosine‑phosphatase ywlE/UPF0059 membrane protein ywlD |
| RA | CP006881 | 3,622,727 | A→T | 6.6% | F2I (TTT→ATT) | U712_18680 ← | Hypothetical Protein |
| RA | CP006881 | 3,723,022 | G→A | 100% | intergenic (‑136/‑165) | U712_19190 ← / → U712_19195 | PTS system sucrose‑specific EIIBC component/putative transporter ywcJ |
| RA | CP006881 | 3,723,045 | T→C | 100% | intergenic (‑159/‑142) | U712_19190 ← / → U712_19195 | PTS system sucrose‑specific EIIBC component/putative transporter ywcJ |
| RA | CP006881 | 3,723,066:1 | +A | 93.6% | intergenic (‑180/‑121) | U712_19190 ← / → U712_19195 | PTS system sucrose‑specific EIIBC component/putative transporter ywcJ |
| RA | CP006881 | 3,723,067 | G→T | 100% | intergenic (‑181/‑120) | U712_19190 ← / → U712_19195 | PTS system sucrose‑specific EIIBC component/putative transporter ywcJ |
| RA | CP006881 | 3,723,091 | A→T | 100% | intergenic (‑205/‑96) | U712_19190 ← / → U712_19195 | PTS system sucrose‑specific EIIBC component/putative transporter ywcJ |
| RA | CP006881 | 3,723,095 | T→A | 100% | intergenic (‑209/‑92) | U712_19190 ← / → U712_19195 | PTS system sucrose‑specific EIIBC component/putative transporter ywcJ |
| RA | CP006881 | 3,723,097 | T→G | 100% | intergenic (‑211/‑90) | U712_19190 ← / → U712_19195 | PTS system sucrose‑specific EIIBC component/putative transporter ywcJ |
| RA | CP006881 | 3,723,118 | C→T | 100% | intergenic (‑232/‑69) | U712_19190 ← / → U712_19195 | PTS system sucrose‑specific EIIBC component/putative transporter ywcJ |
| RA | CP006881 | 3,723,121 | T→A | 100% | intergenic (‑235/‑66) | U712_19190 ← / → U712_19195 | PTS system sucrose‑specific EIIBC component/putative transporter ywcJ |
| RA | CP006881 | 3,723,130 | A→T | 100% | intergenic (‑244/‑57) | U712_19190 ← / → U712_19195 | PTS system sucrose‑specific EIIBC component/putative transporter ywcJ |
| RA | CP006881 | 3,723,162 | C→T | 100% | intergenic (‑276/‑25) | U712_19190 ← / → U712_19195 | PTS system sucrose‑specific EIIBC component/putative transporter ywcJ |
| RA | CP006881 | 3,723,166 | C→G | 100% | intergenic (‑280/‑21) | U712_19190 ← / → U712_19195 | PTS system sucrose‑specific EIIBC component/putative transporter ywcJ |
| RA | CP006881 | 3,723,183 | A→G | 100% | intergenic (‑297/‑4) | U712_19190 ← / → U712_19195 | PTS system sucrose‑specific EIIBC component/putative transporter ywcJ |
| RA | CP006881 | 3,723,204 | G→A | 100% | L6L (TTG→TTA) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,210 | A→G | 100% | K8K (AAA→AAG) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,222 | C→T | 100% | Y12Y (TAC→TAT) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,231 | C→A | 100% | N15K (AAC→AAA) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,236 | T→A | 100% | L17Q (CTA→CAA) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,246 | T→C | 100% | F20F (TTT→TTC) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,248 | T→C | 100% | V21A (GTT→GCT) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,252 | T→A | 100% | S22S (TCT→TCA) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,273 | 2 bp→TC | 100% | coding (87‑88/771 nt) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,276 | A→G | 100% | R30R (AGA→CGG) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,291 | C→T | 100% | S35S (AGC→AGT) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,294 | G→A | 100% | M36I (ATG→ATA) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,300 | C→T | 100% | I38I (ATC→ATT) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,303 | A→T | 100% | G39G (GGA→GGT) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,306 | C→T | 100% | F40F (TTC→TTT) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,336 | T→C | 100% | S50S (AGT→AGC) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,344 | C→T | 100% | S53F (TCT→TTT) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,351 | G→T | 100% | A55A (GCG→GCT) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,366 | T→C | 100% | A60A (GCT→GCC) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,387 | A→T | 100% | T67T (ACA→ACT) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,406 | C→A | 100% | L74M (CTG→ATG) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,438 | T→C | 100% | T84T (ACT→ACC) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,447 | T→C | 100% | T87T (ACT→ACC) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,459 | T→C | 100% | T91T (ACT→ACC) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,474 | A→G | 100% | R96R (CGA→CGG) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,483 | 2 bp→CA | 100% | coding (297‑298/771 nt) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,492 | A→C | 100% | R102R (CGA→CGC) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,501 | G→A | 100% | L105L (CTG→CTA) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,505 | C→T | 100% | L107L (CTG→TTG) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,534 | G→A | 100% | L116L (TTG→TTA) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,549 | A→G | 100% | L121L (CTA→CTG) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,558 | T→C | 100% | I124I (ATT→ATC) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,573 | A→G | 100% | T129T (ACA→ACG) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,576 | G→A | 100% | G130G (GGG→GGA) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,589 | G→C | 100% | A135P (GCT→CCT) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,616 | C→T | 100% | L144L (CTG→TTG) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,642 | C→G | 100% | P152P (CCC→CCG) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,652 | C→T | 100% | L156L (CTG→TTG) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,666 | G→A | 100% | G160G (GGG→GGA) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,717 | T→C | 100% | L177L (CTT→CTC) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,729 | G→A | 100% | G181G (GGG→GGA) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,738 | C→T | 100% | L184L (CTC→CTT) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,771 | C→T | 100% | F195F (TTC→TTT) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,783 | C→T | 100% | F199F (TTC→TTT) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,822 | A→G | 100% | S212S (TCA→TCG) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,853 | G→C | 100% | V223M (GTA→CTG) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,855 | A→G | 100% | V223M (GTA→CTG) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,879 | T→C | 100% | I231I (ATT→ATC) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,888 | A→G | 100% | T234T (ACA→ACG) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,897 | C→T | 100% | N237N (AAC→AAT) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,912 | G→A | 100% | M242I (ATG→ATA) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,915 | C→T | 100% | V243V (GTC→GTT) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,933 | T→C | 100% | Y249Y (TAT→TAC) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,939 | G→A | 100% | T251T (ACG→ACA) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,942 | C→G | 100% | L252L (CTC→CTG) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,948 | C→T | 100% | P254P (CCC→CCT) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,952 | A→C | 100% | K256Q (AAA→CAA) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,724,053 | C→T | 100% | E258E (GAG→GAA) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,078 | C→T | 100% | S250N (AGT→AAT) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,092 | T→C | 100% | A245A (GCA→GCG) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,101 | A→C | 100% | L242L (CTT→CTG) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,119 | A→G | 100% | F236F (TTT→TTC) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,194 | A→G | 100% | S211S (AGT→AGC) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,200 | T→C | 100% | A209A (GCA→GCG) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,208 | T→G | 100% | R207R (AGA→CGA) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,274 | C→T | 100% | E185K (GAA→AAA) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,392 | A→C | 100% | L145L (CTT→CTG) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,446 | G→A | 100% | Y127Y (TAC→TAT) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,467 | T→C | 100% | K120K (AAA→AAG) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,542 | A→G | 100% | S95S (TCT→TCC) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,587 | C→T | 100% | G80G (GGG→GGA) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,623 | A→T | 100% | I68I (ATT→ATA) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,659 | A→G | 100% | F56F (TTT→TTC) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,678 | T→C | 100% | H50R (CAC→CGC) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,719 | G→A | 100% | D36D (GAC→GAT) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,749 | T→C | 100% | P26P (CCA→CCG) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,808 | G→A | 100% | L7L (CTA→TTA) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,831 | C→T | 100% | intergenic (‑5/+35) | U712_19200 ← / ← U712_19205 | SacPA operon antiterminator/Uncharacterized protein ywcI |
| RA | CP006881 | 3,724,849 | A→T | 100% | intergenic (‑23/+17) | U712_19200 ← / ← U712_19205 | SacPA operon antiterminator/Uncharacterized protein ywcI |
| RA | CP006881 | 3,724,902 | A→C | 100% | A89A (GCT→GCG) | U712_19205 ← | Uncharacterized protein ywcI |
| RA | CP006881 | 3,724,977 | T→C | 100% | Q64Q (CAA→CAG) | U712_19205 ← | Uncharacterized protein ywcI |
| RA | CP006881 | 3,724,980 | T→C | 100% | K63K (AAA→AAG) | U712_19205 ← | Uncharacterized protein ywcI |
| RA | CP006881 | 3,725,010 | C→T | 100% | E53E (GAG→GAA) | U712_19205 ← | Uncharacterized protein ywcI |
| RA | CP006881 | 3,725,025 | A→G | 100% | L48L (CTT→CTC) | U712_19205 ← | Uncharacterized protein ywcI |
| RA | CP006881 | 3,725,031 | C→T | 100% | A46A (GCG→GCA) | U712_19205 ← | Uncharacterized protein ywcI |
| RA | CP006881 | 3,725,043 | C→A | 100% | A42A (GCG→GCT) | U712_19205 ← | Uncharacterized protein ywcI |
| RA | CP006881 | 3,725,049 | T→C | 100% | K40K (AAA→AAG) | U712_19205 ← | Uncharacterized protein ywcI |
| RA | CP006881 | 3,725,082 | A→C | 100% | A29A (GCT→GCG) | U712_19205 ← | Uncharacterized protein ywcI |
| RA | CP006881 | 3,725,205:1 | +T | 100% | intergenic (‑37/‑492) | U712_19205 ← / → U712_19210 | Uncharacterized protein ywcI/Minor extracellular protease vpr |
| RA | CP006881 | 3,725,237 | A→G | 100% | intergenic (‑69/‑460) | U712_19205 ← / → U712_19210 | Uncharacterized protein ywcI/Minor extracellular protease vpr |
| RA | CP006881 | 3,725,239 | 2 bp→AA | 100% | intergenic (‑71/‑457) | U712_19205 ← / → U712_19210 | Uncharacterized protein ywcI/Minor extracellular protease vpr |
| RA | CP006881 | 3,788,816 | T→G | 14.4% | intergenic (‑116/‑96) | U712_19550 ← / → U712_19555 | RNA polymerase sigma factor sigY/Putative purine‑cytosine permease yxlA |
| RA | CP006881 | 3,928,748 | T→G | 13.0% | L227R (CTG→CGG) | U712_20250 → | Uncharacterized protein yxaC |
| RA | pSIJ663_pHT315_araE_xy | 111 | T→A | 5.0% | intergenic (–/‑2867) | – / → eryR | –/– |
| RA | pSIJ663_pHT315_araE_xy | 116 | T→A | 5.5% | intergenic (–/‑2862) | – / → eryR | –/– |
| RA | pSIJ663_pHT315_araE_xy | 126 | G→C | 5.7% | intergenic (–/‑2852) | – / → eryR | –/– |
| RA | pSIJ663_pHT315_araE_xy | 131 | G→C | 7.0% | intergenic (–/‑2847) | – / → eryR | –/– |
| RA | pSIJ663_pHT315_araE_xy | 137 | A→C | 5.6% | intergenic (–/‑2841) | – / → eryR | –/– |
| RA | pSIJ663_pHT315_araE_xy | 2,039 | C→T | 100% | intergenic (–/‑939) | – / → eryR | –/– |
| JC | pSIJ663_pHT315_araE_xy | 2,655 | Δ3 bp | 100% | intergenic (–/‑321) | – / → eryR | –/– |
| RA | pSIJ663_pHT315_araE_xy | 3,729 | T→G | 6.7% | intergenic (+14/‑142) | eryR → / → ampR | –/– |
| RA | pSIJ663_pHT315_araE_xy | 3,735 | A→T | 9.5% | intergenic (+20/‑136) | eryR → / → ampR | –/– |
| RA | pSIJ663_pHT315_araE_xy | 3,741 | G→T | 9.9% | intergenic (+26/‑130) | eryR → / → ampR | –/– |
| RA | pSIJ663_pHT315_araE_xy | 3,743 | A→T | 5.2% | intergenic (+28/‑128) | eryR → / → ampR | –/– |
| RA | pSIJ663_pHT315_araE_xy | 3,783 | G→T | 5.1% | intergenic (+68/‑88) | eryR → / → ampR | –/– |
| JC | pSIJ663_pHT315_araE_xy | 3,843 | Δ5 bp | 100% | intergenic (+128/‑24) | eryR → / → ampR | –/– |
| RA | pSIJ663_pHT315_araE_xy | 4,625 | A→C | 7.3% | K252T (AAG→ACG) | ampR → | |
| RA | pSIJ663_pHT315_araE_xy | 4,649 | A→C | 8.6% | Y260S (TAC→TCC) | ampR → | |
| RA | pSIJ663_pHT315_araE_xy | 5,049 | C→T | 100% | intergenic (+318/–) | ampR → / – | –/– |
| RA | pSIJ663_pHT315_araE_xy | 5,173 | T→G | 6.4% | intergenic (+442/–) | ampR → / – | –/– |
| RA | pSIJ663_pHT315_araE_xy | 5,205 | G→A | 100% | intergenic (+474/–) | ampR → / – | –/– |
| RA | pSIJ663_pHT315_araE_xy | 5,302 | A→C | 5.3% | intergenic (+571/–) | ampR → / – | –/– |
| RA | pSIJ663_pHT315_araE_xy | 5,478 | G→A | 100% | intergenic (+747/–) | ampR → / – | –/– |
| RA | pSIJ663_pHT315_araE_xy | 6,673 | A→C | 6.9% | intergenic (+1942/–) | ampR → / – | –/– |
| RA | pSIJ663_pHT315_araE_xy | 6,676 | T→G | 7.7% | intergenic (+1945/–) | ampR → / – | –/– |
| RA | pSIJ663_pHT315_araE_xy | 6,689 | A→C | 9.7% | intergenic (+1958/–) | ampR → / – | –/– |
| RA | pSIJ663_pHT315_araE_xy | 6,718 | A→C | 11.3% | intergenic (+1987/–) | ampR → / – | –/– |
| RA | pSIJ663_pHT315_araE_xy | 8,621 | T→G | 5.5% | intergenic (+3890/–) | ampR → / – | –/– |
| RA | pSIJ663_pHT315_araE_xy | 8,799 | A→C | 5.2% | intergenic (+4068/–) | ampR → / – | –/– |
| RA | pSIJ663_pHT315_araE_xy | 8,839 | T→A | 5.1% | intergenic (+4108/–) | ampR → / – | –/– |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | CP006881 | 245172 | 246101 | 930 | 16 [13] | [13] 14 | [U712_01140]–[U712_01145] | [U712_01140],[U712_01145] |
| * | * | ÷ | CP006881 | 1067427 | 1068618 | 1192 | 15 [12] | [13] 14 | U712_05250 | U712_05250 |
| * | * | ÷ | CP006881 | 1149048 | 1150715 | 1668 | 17 [13] | [11] 14 | U712_05685 | U712_05685 |
| * | * | ÷ | CP006881 | 1503037 | 1504650 | 1614 | 16 [13] | [13] 18 | [U712_07735]–U712_07740 | [U712_07735],U712_07740 |
| * | * | ÷ | CP006881 | 1562280 | 1566638 | 4359 | 14 [13] | [13] 14 | U712_08060 | U712_08060 |
| * | * | ÷ | CP006881 | 2261287 | 2262052 | 766 | 14 [13] | [11] 14 | [U712_11400] | [U712_11400] |
| * | * | ÷ | CP006881 | 3303194–3303322 | 3304612 | 1291–1419 | 15 [13] | [0] 57 | [U712_16990]–[U712_16995] | [U712_16990],[U712_16995] |
| * | * | ÷ | CP006881 | 3725699 | 3728146 | 2448 | 17 [9] | [12] 14 | [U712_19210] | [U712_19210] |
| * | * | ÷ | CP006881 | 3757680 | 3759662 | 1983 | 15 [13] | [11] 14 | U712_19375 | U712_19375 |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP006881 | 9457 = | 62 (1.070) | 847 (15.350) | 3/220 | NT | 92.9% | coding (2464/2466 nt) | U712_00040 | DNA gyrase subunit A |
| ? | CP006881 | 3301929 = | 71 (1.290) | coding (1392/1395 nt) | U712_16990 | Arabinose‑proton symporter | |||||