mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (lowest skew 10 of 111 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 2830738 | 176 (0.920) | 9 (0.050) | 8/144 | NT | 5.0% | coding (1927/2046 nt) | lipA_2 | Lipase 1 |
| ? | USA300TCH1516_ALE | = 2830760 | 184 (1.070) | coding (1905/2046 nt) | lipA_2 | Lipase 1 | |||||
| * | ? | USA300TCH1516_ALE | 2818806 = | 196 (1.030) | 8 (0.050) | 7/142 | NT | 4.8% | intergenic (‑478/+67) | sraP/USA300HOU_RS14425 | Serine‑rich adhesin for platelets/hypothetical protein |
| ? | USA300TCH1516_ALE | 2818849 = | 143 (0.850) | intergenic (‑521/+24) | sraP/USA300HOU_RS14425 | Serine‑rich adhesin for platelets/hypothetical protein | |||||
| * | ? | USA300TCH1516_ALE | = 2719380 | 139 (0.730) | 6 (0.040) | 5/136 | NT | 4.5% | coding (324/705 nt) | cpnA | Cyclopentanol dehydrogenase |
| ? | USA300TCH1516_ALE | = 2719397 | 138 (0.850) | coding (341/705 nt) | cpnA | Cyclopentanol dehydrogenase | |||||
| * | ? | USA300TCH1516_ALE | = 2656579 | 187 (0.980) | 7 (0.040) | 5/146 | NT | 3.7% | intergenic (‑74/+4) | mhqA_3/mhqR | Putative ring‑cleaving dioxygenase MhqA/HTH‑type transcriptional regulator MhqR |
| ? | USA300TCH1516_ALE | = 2656599 | 197 (1.130) | coding (419/435 nt) | mhqR | HTH‑type transcriptional regulator MhqR | |||||
| * | ? | USA300TCH1516_ALE | 2625677 = | 156 (0.820) | 6 (0.040) | 5/144 | NT | 4.3% | coding (724/1335 nt) | sasG | Surface protein G |
| ? | USA300TCH1516_ALE | 2625711 = | 125 (0.730) | coding (690/1335 nt) | sasG | Surface protein G | |||||
| * | ? | USA300TCH1516_ALE | 2552493 = | 205 (1.080) | 8 (0.050) | 8/140 | NT | 4.3% | coding (749/1734 nt) | USA300HOU_RS13150 | putative ABC transporter ATP‑binding protein |
| ? | USA300TCH1516_ALE | 2552527 = | 180 (1.080) | coding (715/1734 nt) | USA300HOU_RS13150 | putative ABC transporter ATP‑binding protein | |||||
| * | ? | USA300TCH1516_ALE | = 2504209 | 189 (0.990) | 8 (0.050) | 7/144 | NT | 4.1% | intergenic (+134/‑131) | ydaG/USA300HOU_RS12890 | General stress protein 26/hypothetical protein |
| ? | USA300TCH1516_ALE | = 2504234 | 209 (1.220) | intergenic (+159/‑106) | ydaG/USA300HOU_RS12890 | General stress protein 26/hypothetical protein | |||||
| * | ? | USA300TCH1516_ALE | = 2494140 | 211 (1.110) | 10 (0.060) | 8/150 | NT | 4.7% | intergenic (‑166/+66) | USA300HOU_RS12835/USA300HOU_RS12845 | Ferredoxin‑‑NADP reductase/hypothetical protein |
| ? | USA300TCH1516_ALE | = 2494178 | 207 (1.160) | intergenic (‑204/+28) | USA300HOU_RS12835/USA300HOU_RS12845 | Ferredoxin‑‑NADP reductase/hypothetical protein | |||||
| * | ? | USA300TCH1516_ALE | = 2476453 | 197 (1.030) | 9 (0.060) | 6/136 | NT | 4.9% | intergenic (‑198/+42) | tcaA/tcaR | Membrane‑associated protein TcaA/HTH‑type transcriptional regulator TcaR |
| ? | USA300TCH1516_ALE | = 2476476 | 180 (1.110) | intergenic (‑221/+19) | tcaA/tcaR | Membrane‑associated protein TcaA/HTH‑type transcriptional regulator TcaR | |||||
| * | ? | USA300TCH1516_ALE | 2422230 = | 212 (1.110) | 8 (0.050) | 7/148 | NT | 4.1% | coding (871/1125 nt) | hpxO | FAD‑dependent urate hydroxylase |
| ? | USA300TCH1516_ALE | 2422269 = | 174 (0.990) | coding (832/1125 nt) | hpxO | FAD‑dependent urate hydroxylase | |||||