mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | ||||||
|---|---|---|---|---|---|---|
| evidence | position | mutation | freq | annotation | gene | description |
| RA | 9,907 | A→C | 6.3% | intergenic (+14/+21) | mog → / ← satP | molybdochelatase incorporating molybdenum into molybdopterin/succinate‑acetate transporter |
| RA | 9,908 | G→T | 6.3% | intergenic (+15/+20) | mog → / ← satP | molybdochelatase incorporating molybdenum into molybdopterin/succinate‑acetate transporter |
| RA | 15,318 | G→A | 8.3% | intergenic (+20/‑127) | dnaJ → / → insL1 | chaperone Hsp40, DnaK co‑chaperone/IS186 transposase |
| RA | 15,319 | T→C | 7.6% | intergenic (+21/‑126) | dnaJ → / → insL1 | chaperone Hsp40, DnaK co‑chaperone/IS186 transposase |
| RA | 16,923 | T→G | 6.3% | K13T (AAG→ACG) | mokC ← | regulatory protein for HokC, overlaps CDS of hokC |
| RA | 16,926 | C→A | 6.2% | R12L (CGT→CTT) | mokC ← | regulatory protein for HokC, overlaps CDS of hokC |
| RA | 17,527 | G→C | 5.5% | S13S (TCG→TCC) | nhaA → | sodium‑proton antiporter |
| RA | 17,528 | G→C | 5.5% | G14R (GGA→CGA) | nhaA → | sodium‑proton antiporter |
| RA | 52,787 | C→T | 5.1% | P210P (CCG→CCA) | pdxA ← | 4‑hydroxy‑L‑threonine phosphate dehydrogenase, NAD‑dependent |
| RA | 53,275 | C→A | 5.6% | A48S (GCG→TCG) | pdxA ← | 4‑hydroxy‑L‑threonine phosphate dehydrogenase, NAD‑dependent |
| RA | 53,376 | G→A | 5.7% | P14L (CCC→CTC) | pdxA ← | 4‑hydroxy‑L‑threonine phosphate dehydrogenase, NAD‑dependent |
| RA | 53,379 | T→C | 5.3% | E13G (GAG→GGG) | pdxA ← | 4‑hydroxy‑L‑threonine phosphate dehydrogenase, NAD‑dependent |
| RA | 78,830 | T→A | 8.9% | intergenic (+31/+18) | setA → / ← leuD | broad specificity sugar efflux system/3‑isopropylmalate dehydratase small subunit |
| RA | 78,831 | T→A | 8.1% | intergenic (+32/+17) | setA → / ← leuD | broad specificity sugar efflux system/3‑isopropylmalate dehydratase small subunit |
| RA | 83,587 | A→C | 10.2% | intergenic (‑58/+35) | leuA ← / ← leuL | 2‑isopropylmalate synthase/leu operon leader peptide |
| RA | 83,590 | G→T | 10.0% | intergenic (‑61/+32) | leuA ← / ← leuL | 2‑isopropylmalate synthase/leu operon leader peptide |
| RA | 87,881 | A→G | 5.3% | intergenic (+33/‑147) | ilvH → / → cra | acetolactate synthase 3, small subunit, valine‑sensitive/transcriptional repressor‑activator for carbon metabolism |
| RA | 87,884 | T→A | 5.4% | intergenic (+36/‑144) | ilvH → / → cra | acetolactate synthase 3, small subunit, valine‑sensitive/transcriptional repressor‑activator for carbon metabolism |
| RA | 87,887 | C→T | 5.0% | intergenic (+39/‑141) | ilvH → / → cra | acetolactate synthase 3, small subunit, valine‑sensitive/transcriptional repressor‑activator for carbon metabolism |
| RA | 111,013 | G→A | 8.0% | intergenic (+29/‑31) | secA → / → mutT | preprotein translocase subunit, ATPase/dGTP‑preferring nucleoside triphosphate pyrophosphohydrolase |
| RA | 111,016 | T→C | 6.9% | intergenic (+32/‑28) | secA → / → mutT | preprotein translocase subunit, ATPase/dGTP‑preferring nucleoside triphosphate pyrophosphohydrolase |
| RA | 130,289 | A→G | 6.5% | G324G (GGT→GGC) ‡ | yacH ← | DUF3300 family protein |
| RA | 130,291 | C→G | 6.4% | G324R (GGT→CGT) ‡ | yacH ← | DUF3300 family protein |
| RA | 130,293 | C→T | 6.5% | G323D (GGC→GAC) | yacH ← | DUF3300 family protein |
| RA | 164,557 | G→C | 6.5% | intergenic (+23/‑173) | hrpB → / → mrcB | putative ATP‑dependent helicase/fused glycosyl transferase and transpeptidase |
| RA | 164,558 | T→A | 6.6% | intergenic (+24/‑172) | hrpB → / → mrcB | putative ATP‑dependent helicase/fused glycosyl transferase and transpeptidase |
| RA | 169,748 | T→A | 10.1% | intergenic (+21/‑30) | fhuA → / → fhuC | ferrichrome outer membrane transporter/iron(3+)‑hydroxamate import ABC transporter ATPase |
| RA | 169,749 | T→A | 10.1% | intergenic (+22/‑29) | fhuA → / → fhuC | ferrichrome outer membrane transporter/iron(3+)‑hydroxamate import ABC transporter ATPase |
| RA | 175,144 | Δ1 bp | 5.9% | coding (38/1422 nt) | clcA → | H(+)/Cl(‑) exchange transporter |
| RA | 175,149:1 | +G | 6.0% | coding (43/1422 nt) | clcA → | H(+)/Cl(‑) exchange transporter |
| RA | 192,579 | A→T | 5.0% | *242L (TAA→TTA) | pyrH → | uridylate kinase |
| RA | 242,344 | C→G | 7.9% | P320P (CCG→CCC) | fadE ← | acyl coenzyme A dehydrogenase |
| RA | 252,589 | G→C | 8.5% | A97P (GCA→CCA) | yafO → | mRNA interferase toxin of the YafO‑YafN toxin‑antitoxin system |
| RA | 252,594 | G→C | 8.2% | W98C (TGG→TGC) | yafO → | mRNA interferase toxin of the YafO‑YafN toxin‑antitoxin system |
| RA | 256,449 | T→C | 12.2% | intergenic (+14/‑78) | gpt → / → frsA | xanthine phosphoribosyltransferase; xanthine‑guanine phosphoribosyltransferase/fermentation‑respiration switch protein; PTS Enzyme IIA(Glc)‑binding protein; pNP‑butyrate esterase activity |
| RA | 256,454 | C→G | 13.2% | intergenic (+19/‑73) | gpt → / → frsA | xanthine phosphoribosyltransferase; xanthine‑guanine phosphoribosyltransferase/fermentation‑respiration switch protein; PTS Enzyme IIA(Glc)‑binding protein; pNP‑butyrate esterase activity |
| RA | 256,459 | G→A | 13.7% | intergenic (+24/‑68) | gpt → / → frsA | xanthine phosphoribosyltransferase; xanthine‑guanine phosphoribosyltransferase/fermentation‑respiration switch protein; PTS Enzyme IIA(Glc)‑binding protein; pNP‑butyrate esterase activity |
| MC JC | 257,908 | Δ776 bp | 100% | [crl] | [crl] | |
| RA | 272,330:1 | +G | 5.8% | intergenic (+141/‑250) | insN → / → eyeA | pseudogene, IS911 transposase A;IS, phage, Tn; Transposon‑related functions; extrachromosomal; transposon related/novel sRNA, function unknown, CP4‑6 propahge |
| RA | 283,516 | A→C | 6.9% | N106H (AAT→CAT) | yagF → | CP4‑6 prophage; dehydratase family protein |
| RA | 283,519 | G→T | 6.8% | G107C (GGC→TGC) | yagF → | CP4‑6 prophage; dehydratase family protein |
| RA | 285,887 | C→A | 5.1% | L165M (CTG→ATG) | yagG → | CP4‑6 prophage; putative sugar transporter |
| RA | 292,302 | C→G | 11.1% | intergenic (+71/+20) | yagJ → / ← yagK | CP4‑6 prophage; uncharacterized protein;Phage or Prophage Related/CP4‑6 prophage; conserved protein |
| RA | 314,255 | T→C | 5.7% | intergenic (‑450/‑102) | ykgP ← / → eaeH | pseudogene, oxidoreductase family/pseudogene, attaching and effacing protein homology;factor; Not classified |
| RA | 314,258 | G→A | 5.7% | intergenic (‑453/‑99) | ykgP ← / → eaeH | pseudogene, oxidoreductase family/pseudogene, attaching and effacing protein homology;factor; Not classified |
| RA | 361,901 | T→G | 5.6% | intergenic (‑41/+25) | lacA ← / ← lacY | thiogalactoside acetyltransferase/lactose permease |
| RA | 361,902 | C→A | 5.6% | intergenic (‑42/+24) | lacA ← / ← lacY | thiogalactoside acetyltransferase/lactose permease |
| RA | 361,908 | G→T | 6.5% | intergenic (‑48/+18) | lacA ← / ← lacY | thiogalactoside acetyltransferase/lactose permease |
| RA | 361,909 | C→T | 5.8% | intergenic (‑49/+17) | lacA ← / ← lacY | thiogalactoside acetyltransferase/lactose permease |
| RA | 454,853 | T→C | 7.1% | intergenic (+64/‑280) | bolA → / → tig | stationary‑phase morphogene, transcriptional repressor for mreB; also regulator for dacA, dacC, and ampC/peptidyl‑prolyl cis/trans isomerase (trigger factor) |
| RA | 454,856 | G→A | 7.4% | intergenic (+67/‑277) | bolA → / → tig | stationary‑phase morphogene, transcriptional repressor for mreB; also regulator for dacA, dacC, and ampC/peptidyl‑prolyl cis/trans isomerase (trigger factor) |
| RA | 464,354 | C→A | 7.5% | intergenic (+46/‑48) | ybaV → / → fadM | putative competence‑suppressing periplasmic helix‑hairpin‑helix DNA‑binding protein/long‑chain acyl‑CoA thioesterase III |
| RA | 464,356 | A→T | 7.5% | intergenic (+48/‑46) | ybaV → / → fadM | putative competence‑suppressing periplasmic helix‑hairpin‑helix DNA‑binding protein/long‑chain acyl‑CoA thioesterase III |
| RA | 464,358 | T→G | 7.3% | intergenic (+50/‑44) | ybaV → / → fadM | putative competence‑suppressing periplasmic helix‑hairpin‑helix DNA‑binding protein/long‑chain acyl‑CoA thioesterase III |
| RA | 475,971 | C→G | 11.8% | intergenic (+20/+11) | ybaY → / ← ybaZ | outer membrane lipoprotein/excision repair protein, alkyltransferase‑like protein ATL |
| RA | 475,972 | C→G | 12.0% | intergenic (+21/+10) | ybaY → / ← ybaZ | outer membrane lipoprotein/excision repair protein, alkyltransferase‑like protein ATL |
| RA | 481,225 | T→G | 9.3% | intergenic (‑517/+29) | tomB ← / ← acrB | Hha toxicity attenuator; conjugation‑related protein/multidrug efflux system protein |
| RA | 481,228 | C→A | 9.6% | intergenic (‑520/+26) | tomB ← / ← acrB | Hha toxicity attenuator; conjugation‑related protein/multidrug efflux system protein |
| JC JC | 564,107 | IS2 (+) +5 bp | 50.4% | coding (370‑374/633 nt) | sfmZ ← | response regulator family protein |
| RA | 569,160 | G→T | 5.0% | D87Y (GAC→TAC) ‡ | ybcK → | DLP12 prophage; putative recombinase |
| RA | 569,161 | A→C | 5.1% | D87A (GAC→GCC) ‡ | ybcK → | DLP12 prophage; putative recombinase |
| RA | 594,946 | C→A | 5.3% | Q166H (CAG→CAT) ‡ | cusR ← | response regulator in two‑component regulatory system with CusS |
| RA | 594,948 | G→C | 5.2% | Q166E (CAG→GAG) ‡ | cusR ← | response regulator in two‑component regulatory system with CusS |
| RA | 594,950 | T→G | 5.3% | H165P (CAT→CCT) | cusR ← | response regulator in two‑component regulatory system with CusS |
| RA | 644,030 | A→G | 5.3% | intergenic (‑63/+167) | rnk ← / ← rna | regulator of nucleoside diphosphate kinase/ribonuclease I |
| RA | 644,038 | G→A | 5.0% | intergenic (‑71/+159) | rnk ← / ← rna | regulator of nucleoside diphosphate kinase/ribonuclease I |
| RA | 647,575 | A→C | 5.2% | V154G (GTC→GGC) | citX ← | apo‑citrate lyase phosphoribosyl‑dephospho‑CoA transferase |
| RA | 657,531 | T→G | 6.3% | intergenic (+30/+24) | cspE → / ← flc | constitutive cold shock family transcription antitermination protein; negative regulator of cspA transcription; RNA melting protein; ssDNA‑binding protein/fluoride efflux channel, dual topology membrane protein |
| RA | 657,533 | A→T | 6.3% | intergenic (+32/+22) | cspE → / ← flc | constitutive cold shock family transcription antitermination protein; negative regulator of cspA transcription; RNA melting protein; ssDNA‑binding protein/fluoride efflux channel, dual topology membrane protein |
| RA | 657,535 | C→A | 6.2% | intergenic (+34/+20) | cspE → / ← flc | constitutive cold shock family transcription antitermination protein; negative regulator of cspA transcription; RNA melting protein; ssDNA‑binding protein/fluoride efflux channel, dual topology membrane protein |
| RA | 699,556 | C→T | 5.6% | intergenic (‑379/+18) | asnB ← / ← umpH | asparagine synthetase B/UMP phosphatase |
| RA | 699,559 | A→G | 5.1% | intergenic (‑382/+15) | asnB ← / ← umpH | asparagine synthetase B/UMP phosphatase |
| RA | 770,679 | G→T | 7.5% | intergenic (+68/‑779) | mngB → / → cydA | alpha‑mannosidase/cytochrome d terminal oxidase, subunit I |
| RA | 770,682 | A→C | 7.6% | intergenic (+71/‑776) | mngB → / → cydA | alpha‑mannosidase/cytochrome d terminal oxidase, subunit I |
| RA | 774,356 | C→G | 7.4% | P16P (CCC→CCG) | ybgE → | putative inner membrane protein in cydABX‑ybgE operon |
| RA | 774,358 | T→A | 7.2% | L17Q (CTG→CAG) | ybgE → | putative inner membrane protein in cydABX‑ybgE operon |
| RA | 784,012 | T→A | 6.1% | Q271L (CAG→CTG) | zitB ← | zinc efflux system |
| RA | 787,780 | A→G | 5.4% | intergenic (‑185/+17) | gpmA ← / ← galM | phosphoglyceromutase 1/aldose 1‑epimerase; type‑1 mutarotase; galactose mutarotase |
| RA | 805,312 | G→T | 7.8% | E604* (GAG→TAG) ‡ | ybhJ → | aconitase family protein |
| RA | 805,313 | A→C | 8.2% | E604A (GAG→GCG) ‡ | ybhJ → | aconitase family protein |
| RA | 847,213 | A→T | 6.1% | intergenic (‑94/+45) | glnP ← / ← glnH | glutamine transporter subunit/glutamine transporter subunit |
| RA | 847,214 | T→A | 6.0% | intergenic (‑95/+44) | glnP ← / ← glnH | glutamine transporter subunit/glutamine transporter subunit |
| RA | 847,215 | A→T | 5.9% | intergenic (‑96/+43) | glnP ← / ← glnH | glutamine transporter subunit/glutamine transporter subunit |
| RA | 857,576 | T→C | 6.6% | intergenic (+21/+220) | ybiT → / ← ybiU | ABC‑F family putative regulatory ATPase/DUF1479 family protein |
| RA | 857,578 | C→G | 6.7% | intergenic (+23/+218) | ybiT → / ← ybiU | ABC‑F family putative regulatory ATPase/DUF1479 family protein |
| RA | 857,580 | G→A | 6.7% | intergenic (+25/+216) | ybiT → / ← ybiU | ABC‑F family putative regulatory ATPase/DUF1479 family protein |
| RA | 858,924 | T→G | 6.3% | R46R (CGA→CGC) | ybiU ← | DUF1479 family protein |
| RA | 858,927 | C→A | 6.5% | T45T (ACG→ACT) | ybiU ← | DUF1479 family protein |
| RA | 892,455 | G→C | 8.7% | V163V (GTG→GTC) | rimK → | ribosomal protein S6 modification protein |
| RA | 892,457 | T→A | 9.0% | I164N (ATT→AAT) | rimK → | ribosomal protein S6 modification protein |
| RA | 892,459 | G→C | 9.0% | D165H (GAC→CAC) | rimK → | ribosomal protein S6 modification protein |
| RA | 915,080 | G→C | 7.3% | intergenic (‑223/+272) | ybjE ← / ← aqpZ | putative transporter/aquaporin Z |
| RA | 915,081 | G→C | 6.6% | intergenic (‑224/+271) | ybjE ← / ← aqpZ | putative transporter/aquaporin Z |
| RA | 926,168 | C→T | 5.3% | intergenic (‑197/+57) | serW ← / ← infA | tRNA‑Ser/translation initiation factor IF‑1 |
| RA | 926,174 | A→T | 6.7% | intergenic (‑203/+51) | serW ← / ← infA | tRNA‑Ser/translation initiation factor IF‑1 |
| RA | 926,180 | A→G | 6.5% | intergenic (‑209/+45) | serW ← / ← infA | tRNA‑Ser/translation initiation factor IF‑1 |
| RA | 940,751 | T→C | 7.0% | intergenic (+31/‑208) | serS → / → dmsA | seryl‑tRNA synthetase/dimethyl sulfoxide reductase, anaerobic, subunit A |
| RA | 940,754 | G→A | 7.8% | intergenic (+34/‑205) | serS → / → dmsA | seryl‑tRNA synthetase/dimethyl sulfoxide reductase, anaerobic, subunit A |
| RA | 963,761 | T→C | 5.4% | intergenic (+93/‑67) | rpsA → / → ihfB | 30S ribosomal subunit protein S1/integration host factor (IHF), DNA‑binding protein, beta subunit |
| RA | 963,762 | A→G | 5.4% | intergenic (+94/‑66) | rpsA → / → ihfB | 30S ribosomal subunit protein S1/integration host factor (IHF), DNA‑binding protein, beta subunit |
| RA | 963,763 | C→T | 5.4% | intergenic (+95/‑65) | rpsA → / → ihfB | 30S ribosomal subunit protein S1/integration host factor (IHF), DNA‑binding protein, beta subunit |
| RA | 963,764 | G→A | 5.5% | intergenic (+96/‑64) | rpsA → / → ihfB | 30S ribosomal subunit protein S1/integration host factor (IHF), DNA‑binding protein, beta subunit |
| RA | 977,479 | C→T | 5.1% | A385V (GCG→GTG) | mukB → | chromosome condensin MukBEF, ATPase and DNA‑binding subunit |
| RA | 987,560 | G→C | 9.4% | intergenic (‑578/+25) | ompF ← / ← asnS | outer membrane porin 1a (Ia;b;F)/asparaginyl tRNA synthetase |
| RA | 987,561 | G→C | 9.5% | intergenic (‑579/+24) | ompF ← / ← asnS | outer membrane porin 1a (Ia;b;F)/asparaginyl tRNA synthetase |
| RA | 1,015,912 | T→A | 20.8% | intergenic (+30/+40) | rmf → / ← fabA | ribosome modulation factor/beta‑hydroxydecanoyl thioester dehydrase |
| RA | 1,018,983 | A→T | 7.3% | intergenic (+46/+30) | matP → / ← ompA | Ter macrodomain organizer matS‑binding protein/outer membrane protein A (3a;II*;G;d) |
| RA | 1,018,986 | A→T | 7.3% | intergenic (+49/+27) | matP → / ← ompA | Ter macrodomain organizer matS‑binding protein/outer membrane protein A (3a;II*;G;d) |
| RA | 1,052,257 | C→T | 5.8% | intergenic (+17/+32) | gnsA → / ← yccM | putative phosphatidylethanolamine synthesis regulator/putative 4Fe‑4S membrane protein |
| RA | 1,052,260 | T→C | 5.6% | intergenic (+20/+29) | gnsA → / ← yccM | putative phosphatidylethanolamine synthesis regulator/putative 4Fe‑4S membrane protein |
| RA | 1,052,261 | G→A | 5.6% | intergenic (+21/+28) | gnsA → / ← yccM | putative phosphatidylethanolamine synthesis regulator/putative 4Fe‑4S membrane protein |
| RA | 1,052,264 | A→G | 5.6% | intergenic (+24/+25) | gnsA → / ← yccM | putative phosphatidylethanolamine synthesis regulator/putative 4Fe‑4S membrane protein |
| RA | 1,127,799 | C→A | 5.9% | intergenic (+70/‑40) | yceM → / → murJ | putative oxidoreductase/putative lipid II flippase |
| RA | 1,127,800 | T→A | 5.9% | intergenic (+71/‑39) | yceM → / → murJ | putative oxidoreductase/putative lipid II flippase |
| RA | 1,127,801 | T→G | 5.2% | intergenic (+72/‑38) | yceM → / → murJ | putative oxidoreductase/putative lipid II flippase |
| RA | 1,129,394 | G→C | 8.1% | intergenic (+20/+20) | murJ → / ← flgN | putative lipid II flippase/export chaperone for FlgK and FlgL |
| RA | 1,139,787 | C→G | 5.4% | D470E (GAC→GAG) | flgK → | flagellar hook‑filament junction protein 1 |
| RA | 1,139,790 | T→A | 5.3% | A471A (GCT→GCA) | flgK → | flagellar hook‑filament junction protein 1 |
| RA | 1,139,793 | T→A | 5.5% | Y472* (TAT→TAA) | flgK → | flagellar hook‑filament junction protein 1 |
| RA | 1,139,796 | C→G | 5.4% | A473A (GCC→GCG) | flgK → | flagellar hook‑filament junction protein 1 |
| RA | 1,147,548 | T→G | 5.0% | intergenic (+8/‑73) | rpmF → / → plsX | 50S ribosomal subunit protein L32/putative phosphate acyltransferase |
| RA | 1,151,632 | A→T | 13.3% | E6D (GAA→GAT) | acpP → | acyl carrier protein (ACP) |
| RA | 1,151,873 | T→A | 12.7% | intergenic (+22/‑66) | acpP → / → fabF | acyl carrier protein (ACP)/3‑oxoacyl‑[acyl‑carrier‑protein] synthase II |
| RA | 1,151,874 | T→A | 12.7% | intergenic (+23/‑65) | acpP → / → fabF | acyl carrier protein (ACP)/3‑oxoacyl‑[acyl‑carrier‑protein] synthase II |
| RA | 1,151,928 | G→A | 13.3% | intergenic (+77/‑11) | acpP → / → fabF | acyl carrier protein (ACP)/3‑oxoacyl‑[acyl‑carrier‑protein] synthase II |
| RA | 1,153,208 | T→C | 7.2% | intergenic (+28/‑92) | fabF → / → pabC | 3‑oxoacyl‑[acyl‑carrier‑protein] synthase II/4‑amino‑4‑deoxychorismate lyase component of para‑aminobenzoate synthase multienzyme complex |
| RA | 1,153,213 | T→A | 6.7% | intergenic (+33/‑87) | fabF → / → pabC | 3‑oxoacyl‑[acyl‑carrier‑protein] synthase II/4‑amino‑4‑deoxychorismate lyase component of para‑aminobenzoate synthase multienzyme complex |
| RA | 1,153,214 | T→A | 6.5% | intergenic (+34/‑86) | fabF → / → pabC | 3‑oxoacyl‑[acyl‑carrier‑protein] synthase II/4‑amino‑4‑deoxychorismate lyase component of para‑aminobenzoate synthase multienzyme complex |
| RA | 1,153,219 | G→A | 6.9% | intergenic (+39/‑81) | fabF → / → pabC | 3‑oxoacyl‑[acyl‑carrier‑protein] synthase II/4‑amino‑4‑deoxychorismate lyase component of para‑aminobenzoate synthase multienzyme complex |
| RA | 1,174,077 | G→A | 9.8% | intergenic (‑113/+15) | mfd ← / ← ycfT | transcription‑repair coupling factor/inner membrane protein |
| RA | 1,174,080 | T→C | 9.9% | intergenic (‑116/+12) | mfd ← / ← ycfT | transcription‑repair coupling factor/inner membrane protein |
| RA | 1,174,501 | A→T | 5.3% | L222Q (CTG→CAG) | ycfT ← | inner membrane protein |
| RA | 1,196,803 | A→C | 6.0% | intergenic (+430/+64) | icd → / ← ymfD | isocitrate dehydrogenase; e14 prophage attachment site; tellurite reductase/e14 prophage; putative SAM‑dependent methyltransferase |
| RA | 1,196,804 | G→T | 5.9% | intergenic (+431/+63) | icd → / ← ymfD | isocitrate dehydrogenase; e14 prophage attachment site; tellurite reductase/e14 prophage; putative SAM‑dependent methyltransferase |
| RA | 1,202,957 | G→T | 8.2% | intergenic (‑24/‑67) | cohE ← / → croE | e14 prophage; repressor protein phage e14/e14 prophage; putative DNA‑binding transcriptional regulator |
| RA | 1,202,959 | T→A | 8.5% | intergenic (‑26/‑65) | cohE ← / → croE | e14 prophage; repressor protein phage e14/e14 prophage; putative DNA‑binding transcriptional regulator |
| RA | 1,202,961 | A→C | 8.4% | intergenic (‑28/‑63) | cohE ← / → croE | e14 prophage; repressor protein phage e14/e14 prophage; putative DNA‑binding transcriptional regulator |
| RA | 1,205,787 | A→T | 6.7% | pseudogene (57/412 nt) | beeE → | pseudogene, portal protein family, e14 prophage;Phage or Prophage Related |
| RA | 1,205,788 | G→C | 6.7% | pseudogene (58/412 nt) | beeE → | pseudogene, portal protein family, e14 prophage;Phage or Prophage Related |
| RA | 1,205,789 | A→T | 6.5% | pseudogene (59/412 nt) | beeE → | pseudogene, portal protein family, e14 prophage;Phage or Prophage Related |
| RA | 1,224,239 | A→T | 7.4% | intergenic (+332/+40) | ycgI → / ← minE | pseudogene/cell division topological specificity factor |
| RA | 1,224,242 | A→T | 7.2% | intergenic (+335/+37) | ycgI → / ← minE | pseudogene/cell division topological specificity factor |
| RA | 1,260,901 | C→T | 10.3% | intergenic (‑98/+27) | dauA ← / ← prs | C4‑dicarboxylic acid transporter/phosphoribosylpyrophosphate synthase |
| RA | 1,260,904 | A→G | 10.2% | intergenic (‑101/+24) | dauA ← / ← prs | C4‑dicarboxylic acid transporter/phosphoribosylpyrophosphate synthase |
| RA | 1,287,122 | T→G | 5.4% | noncoding (115/171 nt) R19R (AGG→CGG) |
rttR ← tpr ← |
rtT sRNA, processed from tyrT transcript protamine‑like protein |
| RA | 1,287,123 | G→C | 6.3% | noncoding (114/171 nt) R18R (CGC→CGG) |
rttR ← tpr ← |
rtT sRNA, processed from tyrT transcript protamine‑like protein |
| RA | 1,292,472 | G→A | 7.8% | intergenic (+107/+37) | galU → / ← hns | glucose‑1‑phosphate uridylyltransferase/global DNA‑binding transcriptional dual regulator H‑NS |
| RA | 1,292,473 | C→G | 7.7% | intergenic (+108/+36) | galU → / ← hns | glucose‑1‑phosphate uridylyltransferase/global DNA‑binding transcriptional dual regulator H‑NS |
| RA | 1,292,474 | T→C | 7.6% | intergenic (+109/+35) | galU → / ← hns | glucose‑1‑phosphate uridylyltransferase/global DNA‑binding transcriptional dual regulator H‑NS |
| JC JC | 1,293,028 | IS1 (–) +9 bp | 31.5% | intergenic (‑106/‑491) | hns ← / → tdk | global DNA‑binding transcriptional dual regulator H‑NS/thymidine kinase/deoxyuridine kinase |
| RA | 1,306,787 | G→A | 9.1% | intergenic (+19/+34) | oppF → / ← yciU | oligopeptide ABC transporter ATPase/UPF0263 family protein |
| RA | 1,306,788 | T→C | 9.2% | intergenic (+20/+33) | oppF → / ← yciU | oligopeptide ABC transporter ATPase/UPF0263 family protein |
| RA | 1,311,830 | A→G | 9.4% | intergenic (+22/+18) | tonB → / ← yciA | membrane spanning protein in TonB‑ExbB‑ExbD transport complex/acyl‑CoA esterase |
| RA | 1,311,831 | C→T | 9.3% | intergenic (+23/+17) | tonB → / ← yciA | membrane spanning protein in TonB‑ExbB‑ExbD transport complex/acyl‑CoA esterase |
| RA | 1,315,796 | A→G | 6.1% | intergenic (‑26/+60) | yciF ← / ← yciG | putative rubrerythrin/ferritin‑like metal‑binding protein/KGG family protein |
| RA | 1,315,800 | A→G | 6.7% | intergenic (‑30/+56) | yciF ← / ← yciG | putative rubrerythrin/ferritin‑like metal‑binding protein/KGG family protein |
| RA | 1,315,803 | C→T | 7.0% | intergenic (‑33/+53) | yciF ← / ← yciG | putative rubrerythrin/ferritin‑like metal‑binding protein/KGG family protein |
| RA | 1,315,807 | C→T | 8.3% | intergenic (‑37/+49) | yciF ← / ← yciG | putative rubrerythrin/ferritin‑like metal‑binding protein/KGG family protein |
| RA | 1,324,837 | A→C | 6.2% | Y31S (TAT→TCT) ‡ | yciQ → | enhancer of membrane protein expression; putative inner membrane protein |
| RA | 1,324,838 | T→A | 5.4% | Y31* (TAT→TAA) ‡ | yciQ → | enhancer of membrane protein expression; putative inner membrane protein |
| RA | 1,324,839 | G→T | 5.6% | E32* (GAA→TAA) | yciQ → | enhancer of membrane protein expression; putative inner membrane protein |
| RA | 1,335,681 | T→C | 5.2% | intergenic (+223/‑150) | yciX → / → acnA | uncharacterized protein/aconitate hydratase 1; aconitase A |
| RA | 1,335,684 | G→A | 5.3% | intergenic (+226/‑147) | yciX → / → acnA | uncharacterized protein/aconitate hydratase 1; aconitase A |
| RA | 1,354,220 | C→A | 5.1% | G100V (GGT→GTT) | sapC ← | antimicrobial peptide transport ABC transporter permease |
| RA | 1,354,223 | A→G | 5.1% | V99A (GTG→GCG) | sapC ← | antimicrobial peptide transport ABC transporter permease |
| RA | 1,354,227 | T→G | 5.0% | T98P (ACC→CCC) | sapC ← | antimicrobial peptide transport ABC transporter permease |
| RA | 1,441,833 | G→C | 7.0% | intergenic (‑90/+21) | hslJ ← / ← ldhA | heat‑inducible lipoprotein involved in novobiocin resistance/fermentative D‑lactate dehydrogenase, NAD‑dependent |
| RA | 1,441,835 | A→T | 6.9% | intergenic (‑92/+19) | hslJ ← / ← ldhA | heat‑inducible lipoprotein involved in novobiocin resistance/fermentative D‑lactate dehydrogenase, NAD‑dependent |
| RA | 1,441,837 | G→C | 7.2% | intergenic (‑94/+17) | hslJ ← / ← ldhA | heat‑inducible lipoprotein involved in novobiocin resistance/fermentative D‑lactate dehydrogenase, NAD‑dependent |
| RA | 1,449,050 | T→A | 6.4% | intergenic (+32/+26) | feaB → / ← tynA | phenylacetaldehyde dehydrogenase/tyramine oxidase, copper‑requiring |
| RA | 1,462,028 | G→A | 7.6% | G379D (GGT→GAT) ‡ | paaJ → | 3‑oxoadipyl‑CoA/3‑oxo‑5,6‑dehydrosuberyl‑CoA thiolase |
| RA | 1,462,029 | T→C | 7.3% | G379G (GGT→GGC) ‡ | paaJ → | 3‑oxoadipyl‑CoA/3‑oxo‑5,6‑dehydrosuberyl‑CoA thiolase |
| RA | 1,498,892 | A→T | 9.9% | intergenic (+17/‑46) | ydcH → / → rimL | DUF465 family protein/ribosomal‑protein‑L7/L12‑serine acetyltransferase |
| RA | 1,498,894 | C→G | 11.0% | intergenic (+19/‑44) | ydcH → / → rimL | DUF465 family protein/ribosomal‑protein‑L7/L12‑serine acetyltransferase |
| RA | 1,498,896 | A→T | 10.0% | intergenic (+21/‑42) | ydcH → / → rimL | DUF465 family protein/ribosomal‑protein‑L7/L12‑serine acetyltransferase |
| RA | 1,517,481 | C→G | 8.3% | R31R (CGC→CGG) | ydcX → | DUF2566 family protein |
| RA | 1,517,484 | C→G | 8.3% | I32M (ATC→ATG) | ydcX → | DUF2566 family protein |
| RA | 1,522,716 | T→A | 6.1% | D117V (GAC→GTC) | yncD ← | putative iron outer membrane transporter |
| RA | 1,541,077 | G→C | 8.1% | A505G (GCC→GGC) | narZ ← | nitrate reductase 2 (NRZ), alpha subunit |
| RA | 1,572,928 | C→G | 6.1% | A759P (GCA→CCA) | pqqL ← | putative periplasmic M16 family zinc metalloendopeptidase |
| RA | 1,597,272 | T→A | 12.9% | pseudogene (716/3861 nt) | yneO ← | pseudogene, AidA homolog |
| RA | 1,620,224 | C→G | 5.9% | intergenic (+17/+14) | marB → / ← eamA | periplasmic mar operon regulator/cysteine and O‑acetyl‑L‑serine efflux system |
| RA | 1,620,227 | C→G | 5.9% | intergenic (+20/+11) | marB → / ← eamA | periplasmic mar operon regulator/cysteine and O‑acetyl‑L‑serine efflux system |
| RA | 1,642,370 | C→G | 6.8% | intergenic (+303/+119) | cspF → / ← quuQ | Qin prophage; cold shock protein/Qin prophage; putative antitermination protein Q |
| RA | 1,642,373 | C→G | 6.8% | intergenic (+306/+116) | cspF → / ← quuQ | Qin prophage; cold shock protein/Qin prophage; putative antitermination protein Q |
| RA | 1,660,194 | A→C | 7.7% | K709T (AAG→ACG) | ynfE → | putative selenate reductase, periplasmic |
| RA | 1,660,198 | T→A | 7.5% | A710A (GCT→GCA) | ynfE → | putative selenate reductase, periplasmic |
| RA | 1,660,200 | C→G | 7.5% | A711G (GCC→GGC) | ynfE → | putative selenate reductase, periplasmic |
| RA | 1,660,202 | T→A | 7.5% | C712S (TGC→AGC) | ynfE → | putative selenate reductase, periplasmic |
| RA | 1,660,206 | G→T | 7.2% | R713L (CGT→CTT) | ynfE → | putative selenate reductase, periplasmic |
| RA | 1,660,438 | A→G | 6.2% | S790S (TCA→TCG) | ynfE → | putative selenate reductase, periplasmic |
| RA | 1,660,442 | C→G | 6.2% | L792V (CTG→GTG) | ynfE → | putative selenate reductase, periplasmic |
| RA | 1,660,446 | C→T | 5.3% | A793V (GCG→GTG) | ynfE → | putative selenate reductase, periplasmic |
| RA | 1,684,016 | A→G | 8.6% | S379G (AGC→GGC) | rstB → | sensory histidine kinase of RstAB two‑component system |
| RA | 1,684,019 | C→T | 8.4% | R380W (CGG→TGG) | rstB → | sensory histidine kinase of RstAB two‑component system |
| RA | 1,685,527 | A→G | 50.6% | G354G (GGT→GGC) | fumC ← | fumarate hydratase (fumarase C),aerobic Class II |
| RA | 1,698,585 | T→G | 5.8% | E199A (GAA→GCA) | malI ← | transcriptional repressor of Mal regulon |
| RA | 1,698,587 | T→A | 5.0% | A198A (GCA→GCT) | malI ← | transcriptional repressor of Mal regulon |
| RA | 1,757,571 | A→T | 5.6% | M51L (ATG→TTG) | lpp → | murein lipoprotein |
| RA | 1,764,687 | T→C | 8.3% | intergenic (‑301/+26) | sufA ← / ← rydB | Fe‑S cluster assembly protein/novel sRNA, function unknown |
| RA | 1,764,693 | C→T | 5.7% | intergenic (‑307/+20) | sufA ← / ← rydB | Fe‑S cluster assembly protein/novel sRNA, function unknown |
| RA | 1,764,701 | G→A | 6.7% | intergenic (‑315/+12) | sufA ← / ← rydB | Fe‑S cluster assembly protein/novel sRNA, function unknown |
| RA | 1,795,227 | A→T | 10.7% | intergenic (‑75/+26) | btuC ← / ← ihfA | vitamin B12 ABC transporter permease/integration host factor (IHF), DNA‑binding protein, alpha subunit |
| RA | 1,795,228 | G→C | 10.7% | intergenic (‑76/+25) | btuC ← / ← ihfA | vitamin B12 ABC transporter permease/integration host factor (IHF), DNA‑binding protein, alpha subunit |
| RA | 1,795,229 | A→T | 10.8% | intergenic (‑77/+24) | btuC ← / ← ihfA | vitamin B12 ABC transporter permease/integration host factor (IHF), DNA‑binding protein, alpha subunit |
| RA | 1,797,388 | G→T | 6.2% | P186Q (CCG→CAG) | pheT ← | phenylalanine tRNA synthetase, beta subunit |
| RA | 1,797,391 | A→C | 6.5% | L185R (CTG→CGG) | pheT ← | phenylalanine tRNA synthetase, beta subunit |
| RA | 1,799,370 | Δ1 bp | 5.5% | intergenic (‑100/+23) | pheM ← / ← rplT | phenylalanyl‑tRNA synthetase operon leader peptide/50S ribosomal subunit protein L20 |
| RA | 1,799,374:1 | +T | 5.4% | intergenic (‑104/+19) | pheM ← / ← rplT | phenylalanyl‑tRNA synthetase operon leader peptide/50S ribosomal subunit protein L20 |
| RA | 1,856,333 | T→G | 7.6% | E199A (GAG→GCG) ‡ | ydjH ← | putative kinase |
| RA | 1,856,334 | C→A | 8.7% | E199* (GAG→TAG) ‡ | ydjH ← | putative kinase |
| RA | 1,864,758 | G→A | 5.5% | intergenic (+24/+24) | yeaD → / ← yeaE | D‑hexose‑6‑phosphate epimerase‑like protein/aldo‑keto reductase, methylglyoxal to acetol, NADPH‑dependent |
| RA | 1,865,682 | G→C | 6.8% | intergenic (‑46/+44) | yeaE ← / ← mipA | aldo‑keto reductase, methylglyoxal to acetol, NADPH‑dependent/scaffolding protein for murein synthesizing machinery |
| RA | 1,880,851 | T→A | 5.9% | intergenic (‑92/+35) | leuE ← / ← dmlR | leucine efflux protein/transcriptional activator of dmlA |
| RA | 1,880,852 | T→A | 5.8% | intergenic (‑93/+34) | leuE ← / ← dmlR | leucine efflux protein/transcriptional activator of dmlA |
| RA | 1,895,391 | A→T | 6.9% | K196I (AAA→ATA) ‡ | pabB → | aminodeoxychorismate synthase, subunit I |
| RA | 1,895,392 | A→T | 6.9% | K196N (AAA→AAT) ‡ | pabB → | aminodeoxychorismate synthase, subunit I |
| RA | 1,944,233 | G→T | 8.9% | intergenic (+34/+113) | znuB → / ← ruvB | zinc ABC transporter permease/ATP‑dependent DNA helicase, component of RuvABC resolvasome |
| RA | 1,944,240 | T→G | 8.6% | intergenic (+41/+106) | znuB → / ← ruvB | zinc ABC transporter permease/ATP‑dependent DNA helicase, component of RuvABC resolvasome |
| RA | 1,944,241 | T→C | 7.7% | intergenic (+42/+105) | znuB → / ← ruvB | zinc ABC transporter permease/ATP‑dependent DNA helicase, component of RuvABC resolvasome |
| RA | 1,964,425 | G→C | 5.3% | A209G (GCC→GGC) | flhA ← | putative flagellar export pore protein |
| MC JC | 1,978,503 | Δ776 bp | 100% | insB1–insA | insB1, insA | |
| RA | 1,984,257 | C→T | 7.5% | V271V (GTG→GTA) | araG ← | L‑arabinose ABC transporter ATPase |
| RA | 1,985,112 | C→G | 9.3% | intergenic (‑43/+27) | araG ← / ← araF | L‑arabinose ABC transporter ATPase/L‑arabinose ABC transporter periplasmic binding protein |
| RA | 1,987,442 | Δ1 bp | 6.1% | intergenic (+14/+65) | ftnB → / ← yecJ | ferritin B, putative ferrous iron reservoir/DUF2766 family protein |
| RA | 1,987,450:1 | +A | 6.3% | intergenic (+22/+57) | ftnB → / ← yecJ | ferritin B, putative ferrous iron reservoir/DUF2766 family protein |
| RA | 2,057,595 | T→C | 7.4% | intergenic (+21/+432) | yeeN → / ← asnW | UPF0082 family protein/tRNA‑Asn |
| RA | 2,057,597 | T→G | 5.2% | intergenic (+23/+430) | yeeN → / ← asnW | UPF0082 family protein/tRNA‑Asn |
| RA | 2,057,599 | T→A | 6.4% | intergenic (+25/+428) | yeeN → / ← asnW | UPF0082 family protein/tRNA‑Asn |
| RA | 2,057,601 | C→A | 5.8% | intergenic (+27/+426) | yeeN → / ← asnW | UPF0082 family protein/tRNA‑Asn |
| RA | 2,057,603 | G→A | 6.2% | intergenic (+29/+424) | yeeN → / ← asnW | UPF0082 family protein/tRNA‑Asn |
| RA | 2,062,354 | T→A | 6.2% | intergenic (+19/+37) | asnV → / ← ldtA | tRNA‑Asn/L,D‑transpeptidase linking Lpp to murein |
| RA | 2,062,355 | T→G | 6.0% | intergenic (+20/+36) | asnV → / ← ldtA | tRNA‑Asn/L,D‑transpeptidase linking Lpp to murein |
| RA | 2,062,356 | C→A | 6.2% | intergenic (+21/+35) | asnV → / ← ldtA | tRNA‑Asn/L,D‑transpeptidase linking Lpp to murein |
| RA | 2,062,357 | T→A | 6.3% | intergenic (+22/+34) | asnV → / ← ldtA | tRNA‑Asn/L,D‑transpeptidase linking Lpp to murein |
| RA | 2,074,691 | C→G | 7.3% | intergenic (+33/‑88) | flu → / → yeeR | CP4‑44 prophage; antigen 43 (Ag43) phase‑variable biofilm formation autotransporter/CP4‑44 prophage; putative membrane protein |
| RA | 2,079,004 | G→C | 8.1% | intergenic (+73/+28) | yoeF → / ← yeeX | pseudogene, CP4‑44 putative prophage remnant;Phage or Prophage Related/UPF0265 family protein |
| RA | 2,090,122 | A→G | 6.1% | intergenic (+76/‑70) | hisL → / → hisG | his operon leader peptide/ATP phosphoribosyltransferase |
| RA | 2,090,124 | C→G | 6.1% | intergenic (+78/‑68) | hisL → / → hisG | his operon leader peptide/ATP phosphoribosyltransferase |
| RA | 2,090,126 | C→T | 6.1% | intergenic (+80/‑66) | hisL → / → hisG | his operon leader peptide/ATP phosphoribosyltransferase |
| RA | 2,142,505 | G→C | 7.5% | R148R (CGC→CGG) | udk ← | uridine/cytidine kinase |
| RA | 2,145,313 | C→A | 53.5% | S683Y (TCC→TAC) | yegE → | putative diguanylate cyclase |
| RA | 2,173,361 | Δ2 bp | 100% | pseudogene (1‑2/442 nt) | gatC ← | pseudogene, galactitol‑specific enzyme IIC component of PTS;transport; Transport of small molecules: Carbohydrates, organic acids, alcohols; PTS system galactitol‑specific enzyme IIC |
| RA | 2,187,314 | C→G | 5.3% | intergenic (+16/+66) | rcnB → / ← yehA | periplasmic modulator of Ni and Co efflux/putative fimbrial‑like adhesin protein |
| RA | 2,229,322 | C→G | 10.5% | intergenic (+257/+116) | yohP → / ← dusC | uncharacterized protein/tRNA‑dihydrouridine synthase C |
| RA | 2,229,323 | C→G | 10.5% | intergenic (+258/+115) | yohP → / ← dusC | uncharacterized protein/tRNA‑dihydrouridine synthase C |
| RA | 2,270,602 | T→C | 8.0% | intergenic (+57/‑124) | mepS → / → rtn | murein DD‑endopeptidase, space‑maker hydrolase, mutational suppressor of prc thermosensitivity, outer membrane lipoprotein, weak murein LD‑carboxypeptidase/resistance protein for phages lambda and N4, putative membrane‑anchored cyclic‑di‑GMP phosphodiesterase |
| RA | 2,270,605 | G→A | 8.0% | intergenic (+60/‑121) | mepS → / → rtn | murein DD‑endopeptidase, space‑maker hydrolase, mutational suppressor of prc thermosensitivity, outer membrane lipoprotein, weak murein LD‑carboxypeptidase/resistance protein for phages lambda and N4, putative membrane‑anchored cyclic‑di‑GMP phosphodiesterase |
| RA | 2,282,832 | C→G | 5.6% | intergenic (+31/+108) | rplY → / ← yejK | 50S ribosomal subunit protein L25/spermidine nucleoid‑associated protein |
| RA | 2,282,906 | C→A | 5.0% | intergenic (+105/+34) | rplY → / ← yejK | 50S ribosomal subunit protein L25/spermidine nucleoid‑associated protein |
| RA | 2,286,311 | C→G | 11.5% | intergenic (+24/+79) | proL → / ← yejO | tRNA‑Pro/pseudogene, autotransporter outer membrane homology;putative transport; Not classified; putative ATP‑binding component of a transport system |
| RA | 2,286,313 | T→A | 11.2% | intergenic (+26/+77) | proL → / ← yejO | tRNA‑Pro/pseudogene, autotransporter outer membrane homology;putative transport; Not classified; putative ATP‑binding component of a transport system |
| RA | 2,286,315 | C→G | 11.3% | intergenic (+28/+75) | proL → / ← yejO | tRNA‑Pro/pseudogene, autotransporter outer membrane homology;putative transport; Not classified; putative ATP‑binding component of a transport system |
| RA | 2,305,085 | A→G | 11.1% | intergenic (+692/+23) | eco → / ← mqo | ecotin, a serine protease inhibitor/malate dehydrogenase, FAD/NAD(P)‑binding domain |
| RA | 2,305,086 | C→G | 10.8% | intergenic (+693/+22) | eco → / ← mqo | ecotin, a serine protease inhibitor/malate dehydrogenase, FAD/NAD(P)‑binding domain |
| RA | 2,305,087 | C→T | 10.8% | intergenic (+694/+21) | eco → / ← mqo | ecotin, a serine protease inhibitor/malate dehydrogenase, FAD/NAD(P)‑binding domain |
| RA | 2,311,616 | C→T | 6.8% | intergenic (‑82/+30) | apbE ← / ← ompC | putative thiamine‑synthetic flavin transferase lipoprotein/outer membrane porin protein C |
| RA | 2,311,619 | A→G | 6.0% | intergenic (‑85/+27) | apbE ← / ← ompC | putative thiamine‑synthetic flavin transferase lipoprotein/outer membrane porin protein C |
| RA | 2,314,800 | A→C | 9.6% | Q438P (CAG→CCG) ‡ | rcsD → | phosphotransfer intermediate protein in two‑component regulatory system with RcsBC |
| RA | 2,314,801 | G→T | 9.6% | Q438H (CAG→CAT) ‡ | rcsD → | phosphotransfer intermediate protein in two‑component regulatory system with RcsBC |
| RA | 2,318,095 | C→G | 38.6% | L594F (TTG→TTC) | rcsC ← | hybrid sensory kinase in two‑component regulatory system with RcsB and YojN |
| RA | 2,319,371 | G→A | 6.2% | T169I (ACC→ATC) | rcsC ← | hybrid sensory kinase in two‑component regulatory system with RcsB and YojN |
| RA | 2,319,374 | T→C | 7.0% | D168G (GAT→GGT) | rcsC ← | hybrid sensory kinase in two‑component regulatory system with RcsB and YojN |
| RA | 2,373,177 | G→A | 6.2% | G96S (GGC→AGC) | arnF → | undecaprenyl phosphate‑alpha‑L‑ara4N exporter; flippase ArnEF subunit |
| RA | 2,373,180 | T→C | 6.3% | W97R (TGG→CGG) | arnF → | undecaprenyl phosphate‑alpha‑L‑ara4N exporter; flippase ArnEF subunit |
| RA | 2,375,483 | A→T | 7.9% | L160L (CTT→CTA) ‡ | menC ← | O‑succinylbenzoyl‑CoA synthase |
| RA | 2,375,484 | A→T | 8.0% | L160H (CTT→CAT) ‡ | menC ← | O‑succinylbenzoyl‑CoA synthase |
| RA | 2,383,956 | A→T | 7.3% | intergenic (+32/+39) | elaD → / ← yfbK | protease, capable of cleaving an AMC‑ubiquitin model substrate/Von Willebrand factor domain putative lipoprotein |
| RA | 2,383,959 | A→T | 7.4% | intergenic (+35/+36) | elaD → / ← yfbK | protease, capable of cleaving an AMC‑ubiquitin model substrate/Von Willebrand factor domain putative lipoprotein |
| RA | 2,390,012 | Δ1 bp | 5.5% | intergenic (+48/+36) | yfbP → / ← nuoN | TPR‑like repeats‑containing protein/NADH:ubiquinone oxidoreductase, membrane subunit N |
| RA | 2,390,016:1 | +C | 5.6% | intergenic (+52/+32) | yfbP → / ← nuoN | TPR‑like repeats‑containing protein/NADH:ubiquinone oxidoreductase, membrane subunit N |
| RA | 2,428,697 | A→G | 5.7% | intergenic (‑71/+24) | ubiX ← / ← purF | 3‑octaprenyl‑4‑hydroxybenzoate carboxy‑lyase/amidophosphoribosyltransferase |
| RA | 2,428,699 | A→T | 5.6% | intergenic (‑73/+22) | ubiX ← / ← purF | 3‑octaprenyl‑4‑hydroxybenzoate carboxy‑lyase/amidophosphoribosyltransferase |
| RA | 2,428,701 | C→T | 5.5% | intergenic (‑75/+20) | ubiX ← / ← purF | 3‑octaprenyl‑4‑hydroxybenzoate carboxy‑lyase/amidophosphoribosyltransferase |
| RA | 2,440,866 | A→G | 5.6% | L247P (CTG→CCG) | fabB ← | 3‑oxoacyl‑[acyl‑carrier‑protein] synthase I |
| RA | 2,441,661 | C→A | 5.3% | intergenic (‑56/‑103) | fabB ← / → mnmC | 3‑oxoacyl‑[acyl‑carrier‑protein] synthase I/fused 5‑methylaminomethyl‑2‑thiouridine‑forming enzyme methyltransferase and FAD‑dependent demodification enzyme |
| RA | 2,441,662 | T→G | 5.3% | intergenic (‑57/‑102) | fabB ← / → mnmC | 3‑oxoacyl‑[acyl‑carrier‑protein] synthase I/fused 5‑methylaminomethyl‑2‑thiouridine‑forming enzyme methyltransferase and FAD‑dependent demodification enzyme |
| RA | 2,462,677 | A→T | 5.4% | intergenic (+31/‑335) | fadL → / → yfdF | long‑chain fatty acid outer membrane transporter/uncharacterized protein |
| RA | 2,462,678 | T→A | 5.2% | intergenic (+32/‑334) | fadL → / → yfdF | long‑chain fatty acid outer membrane transporter/uncharacterized protein |
| RA | 2,462,679 | A→T | 5.2% | intergenic (+33/‑333) | fadL → / → yfdF | long‑chain fatty acid outer membrane transporter/uncharacterized protein |
| RA | 2,519,222 | T→G | 7.2% | intergenic (+17/+35) | yfeD → / ← gltX | DUF1323 family putative DNA‑binding protein/glutamyl‑tRNA synthetase |
| RA | 2,519,225 | T→A | 7.8% | intergenic (+20/+32) | yfeD → / ← gltX | DUF1323 family putative DNA‑binding protein/glutamyl‑tRNA synthetase |
| RA | 2,519,228 | C→A | 6.8% | intergenic (+23/+29) | yfeD → / ← gltX | DUF1323 family putative DNA‑binding protein/glutamyl‑tRNA synthetase |
| RA | 2,536,063 | C→A | 22.0% | A77E (GCA→GAA) | crr → | glucose‑specific enzyme IIA component of PTS |
| RA | 2,536,099 | T→G | 17.2% | F89C (TTC→TGC) | crr → | glucose‑specific enzyme IIA component of PTS |
| RA | 2,561,205 | A→T | 9.0% | intergenic (+307/‑163) | yffL → / → yffM | CPZ‑55 prophage; uncharacterized protein/CPZ‑55 prophage; uncharacterized protein |
| RA | 2,561,206 | A→T | 9.0% | intergenic (+308/‑162) | yffL → / → yffM | CPZ‑55 prophage; uncharacterized protein/CPZ‑55 prophage; uncharacterized protein |
| RA | 2,589,122 | G→A | 5.5% | G510S (GGC→AGC) | acrD → | aminoglycoside/multidrug efflux system |
| RA | 2,589,125 | T→C | 5.8% | F511L (TTT→CTT) | acrD → | aminoglycoside/multidrug efflux system |
| RA | 2,590,767 | T→C | 6.1% | intergenic (+59/+40) | acrD → / ← ypfM | aminoglycoside/multidrug efflux system/stress‑induced small enterobacterial protein |
| RA | 2,590,771 | C→G | 5.9% | intergenic (+63/+36) | acrD → / ← ypfM | aminoglycoside/multidrug efflux system/stress‑induced small enterobacterial protein |
| RA | 2,622,348:1 | +A | 6.4% | coding (115/639 nt) | purN → | phosphoribosylglycinamide formyltransferase 1 |
| RA | 2,622,354 | Δ1 bp | 6.6% | coding (121/639 nt) | purN → | phosphoribosylglycinamide formyltransferase 1 |
| RA | 2,650,497 | A→G | 6.7% | G597G (GGT→GGC) ‡ | yfhM ← | bacterial alpha2‑macroglobulin colonization factor ECAM; anti‑host protease defense factor; periplasmic inner membrane‑anchored lipoprotein |
| RA | 2,650,498 | C→T | 6.7% | G597D (GGT→GAT) ‡ | yfhM ← | bacterial alpha2‑macroglobulin colonization factor ECAM; anti‑host protease defense factor; periplasmic inner membrane‑anchored lipoprotein |
| RA | 2,653,367 | G→A | 9.5% | intergenic (+28/‑488) | sseA → / → ryfA | 3‑mercaptopyruvate sulfurtransferase/novel sRNA, function unknown |
| RA | 2,653,372 | T→C | 9.5% | intergenic (+33/‑483) | sseA → / → ryfA | 3‑mercaptopyruvate sulfurtransferase/novel sRNA, function unknown |
| RA | 2,654,142 | T→A | 5.0% | noncoding (288/304 nt) | ryfA → | novel sRNA, function unknown |
| RA | 2,704,304 | A→G | 8.9% | intergenic (‑241/+31) | rnc ← / ← lepB | RNase III/leader peptidase (signal peptidase I) |
| RA | 2,704,306 | A→T | 8.7% | intergenic (‑243/+29) | rnc ← / ← lepB | RNase III/leader peptidase (signal peptidase I) |
| RA | 2,704,308 | C→T | 8.7% | intergenic (‑245/+27) | rnc ← / ← lepB | RNase III/leader peptidase (signal peptidase I) |
| RA | 2,717,169 | T→G | 5.4% | L139R (CTC→CGC) ‡ | ung → | uracil‑DNA‑glycosylase |
| RA | 2,717,170 | C→A | 5.9% | L139L (CTC→CTA) ‡ | ung → | uracil‑DNA‑glycosylase |
| RA | 2,726,043 | G→T | 5.5% | intergenic (‑297/+26) | kgtP ← / ← rrfG | alpha‑ketoglutarate transporter/5S ribosomal RNA of rrnG operon |
| RA | 2,726,044 | T→G | 5.4% | intergenic (‑298/+25) | kgtP ← / ← rrfG | alpha‑ketoglutarate transporter/5S ribosomal RNA of rrnG operon |
| RA | 2,726,045 | C→A | 5.6% | intergenic (‑299/+24) | kgtP ← / ← rrfG | alpha‑ketoglutarate transporter/5S ribosomal RNA of rrnG operon |
| RA | 2,726,046 | A→C | 5.5% | intergenic (‑300/+23) | kgtP ← / ← rrfG | alpha‑ketoglutarate transporter/5S ribosomal RNA of rrnG operon |
| RA | 2,729,465 | G→A | 10.0% | intergenic (‑21/+151) | gltW ← / ← rrsG | tRNA‑Glu/16S ribosomal RNA of rrnG operon |
| RA | 2,729,466 | T→A | 9.6% | intergenic (‑22/+150) | gltW ← / ← rrsG | tRNA‑Glu/16S ribosomal RNA of rrnG operon |
| RA | 2,729,467 | T→C | 9.6% | intergenic (‑23/+149) | gltW ← / ← rrsG | tRNA‑Glu/16S ribosomal RNA of rrnG operon |
| RA | 2,731,073 | A→T | 7.0% | noncoding (85/1542 nt) | rrsG ← | 16S ribosomal RNA of rrnG operon |
| RA | 2,731,074 | A→T | 6.8% | noncoding (84/1542 nt) | rrsG ← | 16S ribosomal RNA of rrnG operon |
| RA | 2,732,147 | A→T | 6.0% | L676Q (CTG→CAG) | clpB ← | protein disaggregation chaperone |
| RA | 2,732,150 | A→T | 5.2% | L675Q (CTG→CAG) | clpB ← | protein disaggregation chaperone |
| RA | 2,758,920 | C→T | 5.4% | intergenic (+64/‑65) | alpA → / → yfjI | CP4‑57 prophage; DNA‑binding transcriptional activator/CP4‑57 prophage; uncharacterized protein |
| RA | 2,758,927 | A→G | 5.3% | intergenic (+71/‑58) | alpA → / → yfjI | CP4‑57 prophage; DNA‑binding transcriptional activator/CP4‑57 prophage; uncharacterized protein |
| RA | 2,767,667 | T→G | 6.7% | intergenic (+312/‑43) | rnlB → / → yfjP | CP4‑57 prophage; uncharacterized protein/CP4‑57 prophage; 50S ribosome‑binding GTPase family protein |
| RA | 2,767,670 | C→A | 7.1% | intergenic (+315/‑40) | rnlB → / → yfjP | CP4‑57 prophage; uncharacterized protein/CP4‑57 prophage; 50S ribosome‑binding GTPase family protein |
| RA | 2,771,180 | G→T | 6.3% | L11L (CTG→CTT) | yfjT → | CP4‑57 prophage; putative periplasmic protein |
| RA | 2,771,183 | A→C | 6.2% | A12A (GCA→GCC) | yfjT → | CP4‑57 prophage; putative periplasmic protein |
| RA | 2,778,123 | G→T | 6.4% | intergenic (+341/+23) | ypjF → / ← ypjA | CP4‑57 prophage; toxin of the YpjF‑YfjZ toxin‑antitoxin system/adhesin‑like autotransporter |
| RA | 2,778,124 | A→C | 6.7% | intergenic (+342/+22) | ypjF → / ← ypjA | CP4‑57 prophage; toxin of the YpjF‑YfjZ toxin‑antitoxin system/adhesin‑like autotransporter |
| RA | 2,810,872 | C→T | 11.7% | H35Y (CAC→TAC) ‡ | mprA → | transcriptional repressor of microcin B17 synthesis and multidrug efflux |
| RA | 2,810,873 | A→G | 11.9% | H35R (CAC→CGC) ‡ | mprA → | transcriptional repressor of microcin B17 synthesis and multidrug efflux |
| RA | 2,814,174 | T→A | 11.0% | intergenic (+20/+44) | emrB → / ← luxS | multidrug efflux system protein/S‑ribosylhomocysteine lyase |
| RA | 2,814,175 | T→A | 11.0% | intergenic (+21/+43) | emrB → / ← luxS | multidrug efflux system protein/S‑ribosylhomocysteine lyase |
| RA | 2,823,839 | T→G | 5.0% | intergenic (‑70/+10) | recA ← / ← pncC | DNA recombination and repair protein; ssDNA‑dependent ATPase; synaptase; ssDNA and dsDNA binding protein; ATP‑dependent homologous DNA strand exchanger; recombinase A; LexA autocleavage cofactor/nicotinamide‑nucleotide amidohydrolase; NMN amidohydrolase |
| RA | 2,847,724 | C→T | 5.1% | L506L (CTG→CTA) | hycC ← | hydrogenase 3, membrane subunit |
| RA | 2,866,487 | G→C | 7.6% | intergenic (+22/+72) | ygbN → / ← rpoS | putative transporter/RNA polymerase, sigma S (sigma 38) factor |
| RA | 2,866,488 | G→C | 6.5% | intergenic (+23/+71) | ygbN → / ← rpoS | putative transporter/RNA polymerase, sigma S (sigma 38) factor |
| RA | 2,902,494 | G→T | 5.5% | G200V (GGA→GTA) ‡ | ygcE → | putative kinase |
| RA | 2,902,495 | A→C | 5.5% | G200G (GGA→GGC) ‡ | ygcE → | putative kinase |
| RA | 2,908,486 | G→C | 5.4% | A394G (GCC→GGC) | pyrG ← | CTP synthetase |
| RA | 2,918,020 | A→C | 5.1% | intergenic (+207/+25) | barA → / ← gudD | hybrid sensory histidine kinase, in two‑component regulatory system with UvrY/D‑glucarate dehydratase 1 |
| RA | 2,952,898 | G→T | 8.6% | L1036I (CTT→ATT) | recB ← | exonuclease V (RecBCD complex), beta subunit |
| RA | 2,971,146 | T→C | 5.5% | intergenic (+13/‑125) | ygdQ → / → ygdR | UPF0053 family inner membrane protein/DUF903 family verified lipoprotein |
| RA | 2,971,151 | T→C | 5.3% | intergenic (+18/‑120) | ygdQ → / → ygdR | UPF0053 family inner membrane protein/DUF903 family verified lipoprotein |
| RA | 2,971,154 | G→A | 5.4% | intergenic (+21/‑117) | ygdQ → / → ygdR | UPF0053 family inner membrane protein/DUF903 family verified lipoprotein |
| RA | 2,971,159 | G→A | 5.3% | intergenic (+26/‑112) | ygdQ → / → ygdR | UPF0053 family inner membrane protein/DUF903 family verified lipoprotein |
| RA | 2,972,652 | A→T | 6.6% | intergenic (+15/+17) | tas → / ← lplT | putative NADP(H)‑dependent aldo‑keto reductase/lysophospholipid transporter |
| RA | 2,972,653 | A→T | 6.5% | intergenic (+16/+16) | tas → / ← lplT | putative NADP(H)‑dependent aldo‑keto reductase/lysophospholipid transporter |
| RA | 3,020,511 | C→G | 5.2% | intergenic (+22/‑29) | ssnA → / → ygfM | putative chlorohydrolase/aminohydrolase/putative oxidoreductase |
| RA | 3,020,512 | A→C | 5.3% | intergenic (+23/‑28) | ssnA → / → ygfM | putative chlorohydrolase/aminohydrolase/putative oxidoreductase |
| RA | 3,061,036 | C→A | 5.0% | P63T (CCG→ACG) | scpA → | methylmalonyl‑CoA mutase |
| RA | 3,061,817 | G→C | 5.1% | W323S (TGG→TCG) | scpA → | methylmalonyl‑CoA mutase |
| RA | 3,098,515 | G→C | 5.9% | intergenic (+112/+43) | yggW → / ← yggM | HemN family putative oxidoreductase/DUF1202 family putative secreted protein |
| RA | 3,098,522 | G→C | 5.9% | intergenic (+119/+36) | yggW → / ← yggM | HemN family putative oxidoreductase/DUF1202 family putative secreted protein |
| RA | 3,101,541 | G→C | 10.3% | P28R (CCG→CGG) | yggN ← | DUF2884 family putative periplasmic protein |
| RA | 3,156,590 | C→A | 7.1% | intergenic (+72/‑33) | yqhD → / → dkgA | aldehyde reductase, NADPH‑dependent/2,5‑diketo‑D‑gluconate reductase A |
| RA | 3,156,591 | T→G | 7.1% | intergenic (+73/‑32) | yqhD → / → dkgA | aldehyde reductase, NADPH‑dependent/2,5‑diketo‑D‑gluconate reductase A |
| RA | 3,169,260 | Δ1 bp | 7.4% | intergenic (‑29/+24) | ygiV ← / ← ygiW | transcriptional repressor for mcbR biofilm gene/hydrogen peroxide and cadmium resistance periplasmic protein; stress‑induced OB‑fold protein |
| RA | 3,169,265:1 | +T | 6.6% | intergenic (‑34/+19) | ygiV ← / ← ygiW | transcriptional repressor for mcbR biofilm gene/hydrogen peroxide and cadmium resistance periplasmic protein; stress‑induced OB‑fold protein |
| RA | 3,180,497 | Δ1 bp | 6.2% | coding (77/1161 nt) | ygiC → | ATP‑Grasp family ATPase |
| RA | 3,180,505 | G→T | 6.9% | E29* (GAG→TAG) ‡ | ygiC → | ATP‑Grasp family ATPase |
| RA | 3,180,506 | A→C | 7.0% | E29A (GAG→GCG) ‡ | ygiC → | ATP‑Grasp family ATPase |
| RA | 3,183,345:1 | +T | 7.8% | intergenic (+22/+468) | zupT → / ← ribB | zinc transporter/3,4‑dihydroxy‑2‑butanone‑4‑phosphate synthase |
| RA | 3,183,350 | Δ1 bp | 7.3% | intergenic (+27/+463) | zupT → / ← ribB | zinc transporter/3,4‑dihydroxy‑2‑butanone‑4‑phosphate synthase |
| RA | 3,291,109 | A→T | 5.1% | K766* (AAA→TAA) ‡ | yraJ → | putative outer membrane protein |
| RA | 3,291,110 | A→T | 5.1% | K766I (AAA→ATA) ‡ | yraJ → | putative outer membrane protein |
| RA | 3,309,004 | C→T | 6.8% | intergenic (‑80/+29) | nlpI ← / ← pnp | lipoprotein involved in osmotic sensitivity and filamentation/polynucleotide phosphorylase/polyadenylase |
| RA | 3,309,009 | C→T | 6.2% | intergenic (‑85/+24) | nlpI ← / ← pnp | lipoprotein involved in osmotic sensitivity and filamentation/polynucleotide phosphorylase/polyadenylase |
| RA | 3,309,012 | A→G | 7.4% | intergenic (‑88/+21) | nlpI ← / ← pnp | lipoprotein involved in osmotic sensitivity and filamentation/polynucleotide phosphorylase/polyadenylase |
| RA | 3,324,952 | A→G | 11.6% | intergenic (‑41/+49) | folP ← / ← ftsH | 7,8‑dihydropteroate synthase/protease, ATP‑dependent zinc‑metallo |
| RA | 3,324,955 | A→G | 10.5% | intergenic (‑44/+46) | folP ← / ← ftsH | 7,8‑dihydropteroate synthase/protease, ATP‑dependent zinc‑metallo |
| RA | 3,324,956 | C→T | 10.4% | intergenic (‑45/+45) | folP ← / ← ftsH | 7,8‑dihydropteroate synthase/protease, ATP‑dependent zinc‑metallo |
| RA | 3,324,959 | C→T | 10.3% | intergenic (‑48/+42) | folP ← / ← ftsH | 7,8‑dihydropteroate synthase/protease, ATP‑dependent zinc‑metallo |
| RA | 3,328,182 | A→T | 6.2% | intergenic (+99/+57) | yhbY → / ← greA | RNA binding protein associated with pre‑50S ribosomal subunits/transcript cleavage factor |
| RA | 3,328,183 | T→A | 6.9% | intergenic (+100/+56) | yhbY → / ← greA | RNA binding protein associated with pre‑50S ribosomal subunits/transcript cleavage factor |
| RA | 3,328,184 | A→T | 6.2% | intergenic (+101/+55) | yhbY → / ← greA | RNA binding protein associated with pre‑50S ribosomal subunits/transcript cleavage factor |
| RA | 3,332,822 | G→A | 5.9% | intergenic (‑87/+40) | yhbE ← / ← rpmA | EamA family inner membrane putative transporter/50S ribosomal subunit protein L27 |
| RA | 3,332,823 | T→C | 5.6% | intergenic (‑88/+39) | yhbE ← / ← rpmA | EamA family inner membrane putative transporter/50S ribosomal subunit protein L27 |
| RA | 3,334,703 | A→G | 5.9% | intergenic (+22/‑206) | ispB → / → sfsB | octaprenyl diphosphate synthase/malPQ operon transcriptional activator |
| RA | 3,334,704 | G→C | 5.9% | intergenic (+23/‑205) | ispB → / → sfsB | octaprenyl diphosphate synthase/malPQ operon transcriptional activator |
| RA | 3,334,705 | C→T | 5.9% | intergenic (+24/‑204) | ispB → / → sfsB | octaprenyl diphosphate synthase/malPQ operon transcriptional activator |
| RA | 3,387,553 | T→A | 7.1% | R212R (CGA→CGT) | aaeB ← | p‑hydroxybenzoic acid efflux system component |
| RA | 3,400,846 | A→T | 7.1% | I81N (ATC→AAC) | mreB ← | cell wall structural complex MreBCD, actin‑like component MreB |
| RA | 3,400,849 | A→T | 7.1% | V80D (GTT→GAT) | mreB ← | cell wall structural complex MreBCD, actin‑like component MreB |
| RA | 3,439,588 | G→C | 7.9% | intergenic (‑79/+28) | yhdN ← / ← rplQ | DUF1992 family protein/50S ribosomal subunit protein L17 |
| RA | 3,439,589 | G→C | 7.8% | intergenic (‑80/+27) | yhdN ← / ← rplQ | DUF1992 family protein/50S ribosomal subunit protein L17 |
| RA | 3,441,062 | G→A | 5.1% | S205F (TCC→TTC) | rpsD ← | 30S ribosomal subunit protein S4 |
| RA | 3,476,685 | C→T | 5.8% | L245L (CTG→CTA) | fkpA ← | FKBP‑type peptidyl‑prolyl cis‑trans isomerase (rotamase) |
| RA | 3,486,217 | A→C | 6.4% | Q33P (CAG→CCG) ‡ | crp → | cAMP‑activated global transcription factor, mediator of catabolite repression |
| RA | 3,486,218 | G→T | 6.4% | Q33H (CAG→CAT) ‡ | crp → | cAMP‑activated global transcription factor, mediator of catabolite repression |
| RA | 3,512,306 | G→C | 5.9% | I13M (ATC→ATG) | yhfZ ← | putative DNA‑binding transcriptional regulator |
| RA | 3,512,309 | G→C | 6.0% | V12V (GTC→GTG) | yhfZ ← | putative DNA‑binding transcriptional regulator |
| RA | 3,520,486 | G→A | 5.3% | T73I (ACT→ATT) ‡ | hofQ ← | DNA catabolic putative fimbrial transporter |
| RA | 3,520,487 | T→A | 5.4% | T73S (ACT→TCT) ‡ | hofQ ← | DNA catabolic putative fimbrial transporter |
| RA | 3,520,488 | T→C | 5.3% | Q72Q (CAA→CAG) | hofQ ← | DNA catabolic putative fimbrial transporter |
| RA | 3,560,455:1 | +G | 100% | intergenic (‑2/+1) | glpR ← / ← glpR | pseudogene, DNA‑binding transcriptional repressor;regulator; Energy metabolism, carbon: Anaerobic respiration; repressor of the glp operon/pseudogene, DNA‑binding transcriptional repressor;regulator; Energy metabolism, carbon: Anaerobic respiration; repressor of the glp operon |
| RA | 3,569,436 | G→A | 5.1% | H628H (CAC→CAT) | glgX ← | glycogen debranching enzyme |
| RA | 3,616,394 | C→A | 5.6% | T71T (ACC→ACA) | nikC → | nickel ABC transporter permease |
| RA | 3,616,399 | T→G | 5.7% | V73G (GTG→GGG) | nikC → | nickel ABC transporter permease |
| RA | 3,642,358 | T→A | 7.5% | intergenic (+27/+22) | dtpB → / ← rsmJ | dipeptide and tripeptide permease B/16S rRNA m(2)G1516 methyltransferase, SAM‑dependent |
| RA | 3,642,361 | T→A | 7.6% | intergenic (+30/+19) | dtpB → / ← rsmJ | dipeptide and tripeptide permease B/16S rRNA m(2)G1516 methyltransferase, SAM‑dependent |
| RA | 3,657,599 | T→A | 13.2% | intergenic (+32/+387) | hdeD → / ← arrS | acid‑resistance membrane protein/antisense sRNA ArrS, function unknown |
| RA | 3,657,601 | G→C | 13.3% | intergenic (+34/+385) | hdeD → / ← arrS | acid‑resistance membrane protein/antisense sRNA ArrS, function unknown |
| RA | 3,657,603 | T→A | 13.9% | intergenic (+36/+383) | hdeD → / ← arrS | acid‑resistance membrane protein/antisense sRNA ArrS, function unknown |
| RA | 3,703,252 | T→G | 5.1% | L199L (CTA→CTC) | dppD ← | dipeptide/heme ABC transporter ATPas |
| RA | 3,708,595 | G→A | 6.3% | intergenic (‑890/+21) | dppA ← / ← proK | dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor/tRNA‑Pro |
| RA | 3,708,596 | T→A | 6.9% | intergenic (‑891/+20) | dppA ← / ← proK | dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor/tRNA‑Pro |
| RA | 3,708,597 | T→C | 6.0% | intergenic (‑892/+19) | dppA ← / ← proK | dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor/tRNA‑Pro |
| RA | 3,714,163:1 | +T | 6.3% | coding (2232/2334 nt) | bisC ← | biotin sulfoxide reductase |
| RA | 3,714,168 | Δ1 bp | 6.2% | coding (2227/2334 nt) | bisC ← | biotin sulfoxide reductase |
| RA | 3,774,207 | C→T | 5.2% | intergenic (+13/‑217) | mtlA → / → mtlD | mannitol‑specific PTS enzyme: IIA, IIB and IIC components/mannitol‑1‑phosphate dehydrogenase, NAD‑dependent |
| RA | 3,774,214 | C→T | 5.9% | intergenic (+20/‑210) | mtlA → / → mtlD | mannitol‑specific PTS enzyme: IIA, IIB and IIC components/mannitol‑1‑phosphate dehydrogenase, NAD‑dependent |
| RA | 3,774,215 | A→G | 5.7% | intergenic (+21/‑209) | mtlA → / → mtlD | mannitol‑specific PTS enzyme: IIA, IIB and IIC components/mannitol‑1‑phosphate dehydrogenase, NAD‑dependent |
| RA | 3,774,222 | A→G | 5.8% | intergenic (+28/‑202) | mtlA → / → mtlD | mannitol‑specific PTS enzyme: IIA, IIB and IIC components/mannitol‑1‑phosphate dehydrogenase, NAD‑dependent |
| RA | 3,781,051 | C→G | 9.5% | intergenic (+34/‑164) | lldD → / → trmL | L‑lactate dehydrogenase, FMN‑linked/tRNA Leu mC34,mU34 2'‑O‑methyltransferase, SAM‑dependent |
| RA | 3,790,300 | A→T | 5.4% | intergenic (‑219/+20) | waaH ← / ← tdh | LPS(HepIII)‑glucuronic acid glycosyltransferase/L‑threonine 3‑dehydrogenase, NAD(P)‑binding |
| RA | 3,790,303 | A→T | 5.2% | intergenic (‑222/+17) | waaH ← / ← tdh | LPS(HepIII)‑glucuronic acid glycosyltransferase/L‑threonine 3‑dehydrogenase, NAD(P)‑binding |
| RA | 3,815,819 | C→G | 5.3% | intergenic (‑51/+15) | pyrE ← / ← rph | orotate phosphoribosyltransferase/ribonuclease PH (defective);enzyme; Degradation of RNA; RNase PH |
| RA | 3,886,756 | G→A | 6.7% | intergenic (+34/‑72) | yidC → / → mnmE | membrane protein insertase/tRNA U34 5‑methylaminomethyl‑2‑thiouridine modification GTPase |
| RA | 3,886,757 | T→C | 6.9% | intergenic (+35/‑71) | yidC → / → mnmE | membrane protein insertase/tRNA U34 5‑methylaminomethyl‑2‑thiouridine modification GTPase |
| RA | 3,900,410 | A→T | 6.4% | P56P (CCT→CCA) | yieL ← | putative xylanase |
| RA | 3,943,841 | T→C | 15.3% | noncoding (138/2904 nt) | rrlC → | 23S ribosomal RNA of rrnC operon |
| RA | 3,943,842 | T→G | 13.9% | noncoding (139/2904 nt) | rrlC → | 23S ribosomal RNA of rrnC operon |
| RA | 3,943,843 | C→A | 13.9% | noncoding (140/2904 nt) | rrlC → | 23S ribosomal RNA of rrnC operon |
| RA | 3,943,844 | G→A | 13.8% | noncoding (141/2904 nt) | rrlC → | 23S ribosomal RNA of rrnC operon |
| RA | 3,953,432 | C→T | 8.5% | intergenic (+19/‑46) | ilvE → / → ilvD | branched‑chain amino acid aminotransferase/dihydroxyacid dehydratase |
| RA | 3,953,433 | A→G | 8.5% | intergenic (+20/‑45) | ilvE → / → ilvD | branched‑chain amino acid aminotransferase/dihydroxyacid dehydratase |
| RA | 3,953,436 | C→T | 8.4% | intergenic (+23/‑42) | ilvE → / → ilvD | branched‑chain amino acid aminotransferase/dihydroxyacid dehydratase |
| RA | 3,953,437 | A→G | 8.5% | intergenic (+24/‑41) | ilvE → / → ilvD | branched‑chain amino acid aminotransferase/dihydroxyacid dehydratase |
| RA | 3,959,481 | C→G | 5.3% | intergenic (+36/+51) | ilvC → / ← ppiC | ketol‑acid reductoisomerase, NAD(P)‑binding/peptidyl‑prolyl cis‑trans isomerase C (rotamase C) |
| RA | 3,959,515 | T→A | 5.2% | intergenic (+70/+17) | ilvC → / ← ppiC | ketol‑acid reductoisomerase, NAD(P)‑binding/peptidyl‑prolyl cis‑trans isomerase C (rotamase C) |
| RA | 3,963,415 | A→C | 8.8% | L272R (CTG→CGG) ‡ | gpp ← | guanosine pentaphosphatase/exopolyphosphatase |
| RA | 3,963,416 | G→T | 8.9% | L272M (CTG→ATG) ‡ | gpp ← | guanosine pentaphosphatase/exopolyphosphatase |
| RA | 3,966,768 | G→T | 5.4% | E118* (GAA→TAA) ‡ | rho → | transcription termination factor |
| RA | 3,966,769 | A→T | 5.5% | E118V (GAA→GTA) ‡ | rho → | transcription termination factor |
| RA | 3,966,770 | A→C | 5.5% | E118D (GAA→GAC) ‡ | rho → | transcription termination factor |
| RA | 3,971,996 | T→A | 7.8% | L246Q (CTG→CAG) | wecC → | UDP‑N‑acetyl‑D‑mannosaminuronic acid dehydrogenase |
| RA | 3,992,474 | C→A | 11.8% | S441* (TCA→TAA) | cyaA → | adenylate cyclase |
| RA | 3,993,337 | Δ1 bp | 54.1% | coding (2185/2547 nt) | cyaA → | adenylate cyclase |
| RA | 3,993,338 | Δ1 bp | 54.1% | coding (2186/2547 nt) | cyaA → | adenylate cyclase |
| RA | 4,008,416 | T→A | 5.3% | intergenic (+39/+23) | rhtC → / ← rhtB | threonine efflux pump/homoserine, homoserine lactone and S‑methyl‑methionine efflux pump |
| RA | 4,008,422 | G→T | 5.3% | intergenic (+45/+17) | rhtC → / ← rhtB | threonine efflux pump/homoserine, homoserine lactone and S‑methyl‑methionine efflux pump |
| RA | 4,008,423 | C→T | 5.2% | intergenic (+46/+16) | rhtC → / ← rhtB | threonine efflux pump/homoserine, homoserine lactone and S‑methyl‑methionine efflux pump |
| RA | 4,027,587 | T→G | 5.1% | intergenic (+359/+22) | fre → / ← fadA | NAD(P)H‑flavin reductase/3‑ketoacyl‑CoA thiolase (thiolase I) |
| RA | 4,049,986 | G→T | 5.3% | noncoding (88/109 nt) | spf → | Spot 42 sRNA antisense regulator of galK translation, Hfq‑dependent |
| RA | 4,070,413 | T→G | 6.3% | intergenic (‑12/+102) | yihR ← / ← yihS | putative sulphoquinovose mutarotase/sulphoquinovose isomerase |
| RA | 4,082,696 | G→C | 8.8% | Q22E (CAG→GAG) | fdoH ← | formate dehydrogenase‑O, Fe‑S subunit |
| RA | 4,093,463 | A→G | 7.4% | S270S (AGT→AGC) | rhaD ← | rhamnulose‑1‑phosphate aldolase |
| RA | 4,114,536 | C→T | 5.5% | intergenic (‑64/+33) | fpr ← / ← glpX | ferredoxin‑NADP reductase; flavodoxin reductase/fructose 1,6‑bisphosphatase II |
| RA | 4,114,537 | G→T | 5.5% | intergenic (‑65/+32) | fpr ← / ← glpX | ferredoxin‑NADP reductase; flavodoxin reductase/fructose 1,6‑bisphosphatase II |
| RA | 4,114,538 | A→C | 5.6% | intergenic (‑66/+31) | fpr ← / ← glpX | ferredoxin‑NADP reductase; flavodoxin reductase/fructose 1,6‑bisphosphatase II |
| RA | 4,114,539 | A→G | 5.6% | intergenic (‑67/+30) | fpr ← / ← glpX | ferredoxin‑NADP reductase; flavodoxin reductase/fructose 1,6‑bisphosphatase II |
| RA | 4,116,933 | G→T | 50.8% | P97H (CCT→CAT) | glpK ← | glycerol kinase |
| RA | 4,117,005 | T→A | 22.7% | D73V (GAT→GTT) | glpK ← | glycerol kinase |
| RA | 4,117,029 | A→G | 6.9% | L65P (CTG→CCG) | glpK ← | glycerol kinase |
| RA | 4,117,039 | C→A | 20.4% | V62L (GTA→TTA) | glpK ← | glycerol kinase |
| RA | 4,130,005 | G→A | 8.2% | L57L (TTG→TTA) | metL → | Bifunctional aspartokinase/homoserine dehydrogenase 2 |
| RA | 4,130,008 | T→C | 8.0% | I58I (ATT→ATC) | metL → | Bifunctional aspartokinase/homoserine dehydrogenase 2 |
| RA | 4,148,493 | G→T | 6.8% | intergenic (‑176/+39) | yijO ← / ← eptC | AraC family putative transcriptional activator/LPS heptose I phosphoethanolamine transferase |
| RA | 4,148,495 | C→G | 6.8% | intergenic (‑178/+37) | yijO ← / ← eptC | AraC family putative transcriptional activator/LPS heptose I phosphoethanolamine transferase |
| RA | 4,148,497 | A→C | 6.8% | intergenic (‑180/+35) | yijO ← / ← eptC | AraC family putative transcriptional activator/LPS heptose I phosphoethanolamine transferase |
| RA | 4,154,916 | G→A | 45.4% | intergenic (‑69/‑85) | argE ← / → argC | acetylornithine deacetylase/N‑acetyl‑gamma‑glutamylphosphate reductase, NAD(P)‑binding |
| RA | 4,213,156 | G→A | 6.0% | noncoding (117/120 nt) | rrfE → | 5S ribosomal RNA of rrnE operon |
| RA | 4,227,550 | G→A | 5.4% | intergenic (+39/‑181) | metH → / → yjbB | homocysteine‑N5‑methyltetrahydrofolate transmethylase, B12‑dependent/putative Na+/Pi‑cotransporter |
| RA | 4,227,555 | A→T | 5.3% | intergenic (+44/‑176) | metH → / → yjbB | homocysteine‑N5‑methyltetrahydrofolate transmethylase, B12‑dependent/putative Na+/Pi‑cotransporter |
| RA | 4,245,108 | T→G | 5.1% | intergenic (‑33/+121) | malF ← / ← malE | maltose transporter subunit/maltose transporter subunit |
| RA | 4,245,111 | C→A | 5.4% | intergenic (‑36/+118) | malF ← / ← malE | maltose transporter subunit/maltose transporter subunit |
| RA | 4,245,113 | C→A | 5.1% | intergenic (‑38/+116) | malF ← / ← malE | maltose transporter subunit/maltose transporter subunit |
| RA | 4,270,144 | G→C | 5.1% | intergenic (+17/‑94) | aphA → / → yjbQ | acid phosphatase/phosphotransferase, class B, non‑specific/thiamine phosphate synthase |
| RA | 4,274,740 | G→A | 5.6% | intergenic (+79/+20) | ssb → / ← yjcB | single‑stranded DNA‑binding protein/putative inner membrane protein |
| RA | 4,274,742 | T→A | 5.7% | intergenic (+81/+18) | ssb → / ← yjcB | single‑stranded DNA‑binding protein/putative inner membrane protein |
| RA | 4,274,744 | T→C | 5.5% | intergenic (+83/+16) | ssb → / ← yjcB | single‑stranded DNA‑binding protein/putative inner membrane protein |
| RA | 4,286,116 | C→G | 8.1% | G419A (GGC→GCC) | acs ← | acetyl‑CoA synthetase |
| RA | 4,296,060 | C→T | 12.8% | intergenic (+266/+376) | gltP → / ← yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| RA | 4,296,380:1 | +CG | 100% | intergenic (+586/+56) | gltP → / ← yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| RA | 4,307,294 | A→T | 10.3% | L169Q (CTG→CAG) | alsK ← | D‑allose kinase |
| RA | 4,307,298 | G→A | 10.4% | P168S (CCC→TCC) | alsK ← | D‑allose kinase |
| RA | 4,312,074 | C→T | 5.4% | intergenic (‑32/+27) | alsB ← / ← alsR | D‑allose ABC transporter periplasmic binding protein/d‑allose‑inducible als operon transcriptional repressor; autorepressor; repressor of rpiR |
| RA | 4,314,233 | A→T | 5.8% | intergenic (+36/+111) | yjdP → / ← phnP | putative periplasmic protein/5‑phospho‑alpha‑D‑ribosyl 1,2‑cyclic phosphate phosphodiesterase |
| RA | 4,335,654 | T→A | 5.3% | intergenic (‑64/+40) | eptA ← / ← adiC | lipid A phosphoethanolamine transferase/arginine:agmatine antiporter |
| RA | 4,335,655 | T→A | 5.3% | intergenic (‑65/+39) | eptA ← / ← adiC | lipid A phosphoethanolamine transferase/arginine:agmatine antiporter |
| RA | 4,356,445 | A→T | 8.4% | intergenic (‑34/+25) | dtpC ← / ← cadA | dipeptide and tripeptide permease/lysine decarboxylase, acid‑inducible |
| RA | 4,356,446 | A→T | 8.3% | intergenic (‑35/+24) | dtpC ← / ← cadA | dipeptide and tripeptide permease/lysine decarboxylase, acid‑inducible |
| RA | 4,362,528 | G→A | 5.9% | intergenic (‑175/+23) | yjdQ ← / ← pheU | pseudogene, P4‑like integrase remnant/tRNA‑Phe |
| RA | 4,362,529 | T→C | 6.1% | intergenic (‑176/+22) | yjdQ ← / ← pheU | pseudogene, P4‑like integrase remnant/tRNA‑Phe |
| RA | 4,366,854 | T→G | 8.7% | intergenic (‑81/+37) | dcuA ← / ← aspA | C4‑dicarboxylate antiporter/aspartate ammonia‑lyase |
| RA | 4,366,855 | C→A | 8.6% | intergenic (‑82/+36) | dcuA ← / ← aspA | C4‑dicarboxylate antiporter/aspartate ammonia‑lyase |
| RA | 4,376,280 | G→A | 5.5% | intergenic (+15/‑37) | efp → / → ecnA | polyproline‑specific translation elongation factor EF‑P/entericidin A membrane lipoprotein, antidote entericidin B |
| RA | 4,376,291 | T→C | 7.1% | intergenic (+26/‑26) | efp → / → ecnA | polyproline‑specific translation elongation factor EF‑P/entericidin A membrane lipoprotein, antidote entericidin B |
| RA | 4,392,617 | C→G | 6.5% | noncoding (35/76 nt) | glyY → | tRNA‑Gly |
| RA | 4,410,037 | T→C | 5.5% | intergenic (+31/‑96) | rlmB → / → yjfI | 23S rRNA mG2251 2'‑O‑ribose methyltransferase, SAM‑dependent/DUF2170 family protein |
| RA | 4,448,423 | T→A | 5.4% | intergenic (+188/‑24) | ytfP → / → chpS | GGCT‑like protein/antitoxin of the ChpBS toxin‑antitoxin system |
| RA | 4,448,424 | T→A | 5.4% | intergenic (+189/‑23) | ytfP → / → chpS | GGCT‑like protein/antitoxin of the ChpBS toxin‑antitoxin system |
| RA | 4,448,425 | T→A | 6.6% | intergenic (+190/‑22) | ytfP → / → chpS | GGCT‑like protein/antitoxin of the ChpBS toxin‑antitoxin system |
| RA | 4,472,434 | G→A | 7.2% | R34* (CGA→TGA) | pyrL ← | pyrBI operon leader peptide |
| RA | 4,472,437 | T→C | 6.5% | N33D (AAT→GAT) | pyrL ← | pyrBI operon leader peptide |
| RA | 4,479,012 | A→T | 6.7% | intergenic (+123/+22) | rraB → / ← yjgM | protein inhibitor of RNase E/GNAT family putative N‑acetyltransferase |
| RA | 4,479,016 | G→C | 6.6% | intergenic (+127/+18) | rraB → / ← yjgM | protein inhibitor of RNase E/GNAT family putative N‑acetyltransferase |
| RA | 4,479,020 | A→T | 7.0% | intergenic (+131/+14) | rraB → / ← yjgM | protein inhibitor of RNase E/GNAT family putative N‑acetyltransferase |
| RA | 4,514,335 | A→T | 6.4% | intergenic (‑27/+18) | fecB ← / ← fecA | ferric citrate ABC transporter periplasmic binding protein/TonB‑dependent outer membrane ferric citrate transporter and signal transducer; ferric citrate extracelluar receptor; FecR‑interacting protein |
| RA | 4,514,336 | A→T | 6.4% | intergenic (‑28/+17) | fecB ← / ← fecA | ferric citrate ABC transporter periplasmic binding protein/TonB‑dependent outer membrane ferric citrate transporter and signal transducer; ferric citrate extracelluar receptor; FecR‑interacting protein |
| RA | 4,515,328 | T→G | 5.5% | E450D (GAA→GAC) ‡ | fecA ← | TonB‑dependent outer membrane ferric citrate transporter and signal transducer; ferric citrate extracelluar receptor; FecR‑interacting protein |
| RA | 4,515,329 | T→A | 6.1% | E450V (GAA→GTA) ‡ | fecA ← | TonB‑dependent outer membrane ferric citrate transporter and signal transducer; ferric citrate extracelluar receptor; FecR‑interacting protein |
| RA | 4,515,330 | C→A | 5.6% | E450* (GAA→TAA) ‡ | fecA ← | TonB‑dependent outer membrane ferric citrate transporter and signal transducer; ferric citrate extracelluar receptor; FecR‑interacting protein |
| RA | 4,520,500 | Δ1 bp | 8.3% | intergenic (‑176/+171) | yjhU ← / ← yjhF | putative DNA‑binding transcriptional regulator; KpLE2 phage‑like element/putative transporter |
| RA | 4,520,504:1 | +T | 7.8% | intergenic (‑180/+167) | yjhU ← / ← yjhF | putative DNA‑binding transcriptional regulator; KpLE2 phage‑like element/putative transporter |
| RA | 4,549,932 | T→A | 5.4% | intergenic (+222/+21) | fimH → / ← gntP | minor component of type 1 fimbriae/fructuronate transporter |
| RA | 4,551,422 | T→A | 7.1% | intergenic (‑126/‑214) | gntP ← / → uxuA | fructuronate transporter/mannonate hydrolase |
| RA | 4,612,329 | A→G | 8.4% | intergenic (+40/‑82) | ytjA → / → yjjU | uncharacterized protein/putative patatin‑like family phospholipase |
| RA | 4,612,330 | G→C | 8.0% | intergenic (+41/‑81) | ytjA → / → yjjU | uncharacterized protein/putative patatin‑like family phospholipase |
| RA | 4,612,331 | C→T | 8.0% | intergenic (+42/‑80) | ytjA → / → yjjU | uncharacterized protein/putative patatin‑like family phospholipase |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3423745–3424234 | 3424540–3424238 | 5–796 | 48 [47] | [47] 48 | [rrfD]–[rrlD] | [rrfD],[rrlD] |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 349605 = | NA (NA) | 5 (0.050) | 5/246 | NT | NA | noncoding (1/365 nt) | REP25 (repetitive extragenic palindromic) element; contains 8 REP sequences | REP25 (repetitive extragenic palindromic) element; contains 8 REP sequences |
| ? | NC_000913 | 349637 = | NA (NA) | noncoding (33/365 nt) | REP25 (repetitive extragenic palindromic) element; contains 8 REP sequences | REP25 (repetitive extragenic palindromic) element; contains 8 REP sequences | |||||
| * | ? | NC_000913 | = 381669 | NA (NA) | 3 (0.030) | 3/246 | NT | NA | noncoding (410/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | = 381695 | NA (NA) | noncoding (436/1331 nt) | IS2 | repeat region | |||||
| * | ? | NC_000913 | = 382071 | NA (NA) | 47 (0.450) | 43/260 | NT | NA | noncoding (812/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | = 382590 | NA (NA) | noncoding (1331/1331 nt) | IS2 | repeat region | |||||
| * | ? | NC_000913 | = 700088 | 96 (0.910) | 6 (0.060) | 4/246 | NT | 6.2% | coding (239/753 nt) | umpH | UMP phosphatase |
| ? | NC_000913 | = 700102 | 91 (0.920) | coding (225/753 nt) | umpH | UMP phosphatase | |||||
| * | ? | NC_000913 | 713121 = | 95 (0.910) | 5 (0.050) | 5/250 | NT | 5.5% | coding (135/546 nt) | seqA | negative modulator of initiation of replication |
| ? | NC_000913 | 713158 = | 81 (0.800) | coding (172/546 nt) | seqA | negative modulator of initiation of replication | |||||
| * | ? | NC_000913 | 1207790 = | 42 (0.400) | 41 (0.450) | 35/228 | NT | 52.6% | coding (290/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | 1209619 = | 37 (0.400) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | = 1207805 | 38 (0.360) | 59 (0.640) | 52/228 | NT | 62.7% | coding (305/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | = 1209602 | 37 (0.400) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | 1269841 = | 80 (0.760) | 6 (0.060) | 4/244 | NT | 9.2% | intergenic (‑31/‑17) | ldrB/rdlB | toxic polypeptide, small/sRNA antisense regulator affects LdrB translation; proposed addiction module in LDR‑B repeat, with toxic peptide LdrB |
| ? | NC_000913 | 1270354 = | 44 (0.450) | intergenic (‑9/‑39) | ldrC/rdlC | toxic polypeptide, small/sRNA antisense regulator affects LdrC translation; proposed addiction module in LDR‑C repeat, with toxic peptide LdrC | |||||
| * | ? | NC_000913 | = 1299498 | 0 (0.000) | 101 (0.990) | 83/252 | NT | 100% | intergenic (+253/‑1684) | ychE/oppA | UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein |
| ? | NC_000913 | 1300698 = | 0 (0.000) | intergenic (+1453/‑484) | ychE/oppA | UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein | |||||
| * | ? | NC_000913 | = 1468433 | NA (NA) | 57 (0.540) | 45/260 | NT | NA | noncoding (808/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | = 1469240 | NA (NA) | noncoding (1/1331 nt) | IS2 | repeat region | |||||
| * | ? | NC_000913 | 1625670 = | 78 (0.740) | 4 (0.040) | 4/246 | NT | 5.4% | coding (1711/2046 nt) | dcp | dipeptidyl carboxypeptidase II |
| ? | NC_000913 | 1625699 = | 67 (0.680) | coding (1682/2046 nt) | dcp | dipeptidyl carboxypeptidase II | |||||
| * | ? | NC_000913 | = 1724046 | 80 (0.760) | 5 (0.050) | 5/246 | NT | 6.0% | coding (1926/2013 nt) | ydhK | putative efflux protein (PET) component of YdhJK efflux pump |
| ? | NC_000913 | = 1724054 | 81 (0.820) | coding (1934/2013 nt) | ydhK | putative efflux protein (PET) component of YdhJK efflux pump | |||||
| * | ? | NC_000913 | = 2304676 | 28 (0.270) | 6 (0.060) | 5/256 | NT | 17.9% | noncoding (260/655 nt) | REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences | REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences |
| ? | NC_000913 | = 2304759 | NA (NA) | noncoding (343/655 nt) | REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences | REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences | |||||
| * | ? | NC_000913 | 2352716 = | 65 (0.620) | 5 (0.050) | 5/246 | NT | 7.6% | coding (70/1629 nt) | glpA | anaerobic sn‑glycerol‑3‑phosphate dehydrogenase, large FAD/NAD(P)‑binding subunit |
| ? | NC_000913 | 2352741 = | 60 (0.600) | coding (95/1629 nt) | glpA | anaerobic sn‑glycerol‑3‑phosphate dehydrogenase, large FAD/NAD(P)‑binding subunit | |||||
| * | ? | NC_000913 | 2410577 = | 102 (0.970) | 5 (0.050) | 5/252 | NT | 5.2% | coding (776/1833 nt) | yfbS | putative transporter |
| ? | NC_000913 | 2410601 = | 85 (0.840) | coding (752/1833 nt) | yfbS | putative transporter | |||||
| * | ? | NC_000913 | = 2533705 | 96 (0.910) | 8 (0.080) | 6/244 | NT | 7.6% | intergenic (+325/‑59) | cysK/ptsH | cysteine synthase A, O‑acetylserine sulfhydrolase A subunit/phosphohistidinoprotein‑hexose phosphotransferase component of PTS system (Hpr) |
| ? | NC_000913 | = 2533719 | 105 (1.070) | intergenic (+339/‑45) | cysK/ptsH | cysteine synthase A, O‑acetylserine sulfhydrolase A subunit/phosphohistidinoprotein‑hexose phosphotransferase component of PTS system (Hpr) | |||||
| * | ? | NC_000913 | 2726200 = | NA (NA) | 41 (0.410) | 11/248 | NT | NA | intergenic (‑12/+81) | rrfG/rrlG | 5S ribosomal RNA of rrnG operon/23S ribosomal RNA of rrnG operon |
| ? | NC_000913 | 2726224 = | NA (NA) | intergenic (‑36/+57) | rrfG/rrlG | 5S ribosomal RNA of rrnG operon/23S ribosomal RNA of rrnG operon | |||||
| * | ? | NC_000913 | 2729475 = | 49 (0.470) | 3 (0.030) | 3/240 | NT | 6.8% | intergenic (‑31/+141) | gltW/rrsG | tRNA‑Glu/16S ribosomal RNA of rrnG operon |
| ? | NC_000913 | = 4168363 | 37 (0.380) | intergenic (+163/‑9) | rrsB/gltT | 16S ribosomal RNA of rrnB operon/tRNA‑Glu | |||||
| * | ? | NC_000913 | 2937381 = | NA (NA) | 7 (0.070) | 6/246 | NT | NA | intergenic (+22/‑87) | fucI/fucK | L‑fucose isomerase/L‑fuculokinase |
| ? | NC_000913 | 2937405 = | NA (NA) | intergenic (+46/‑63) | fucI/fucK | L‑fucose isomerase/L‑fuculokinase | |||||
| * | ? | NC_000913 | 3423376 = | 94 (0.900) | 16 (0.150) | 10/256 | NT | 14.8% | intergenic (+182/+47) | yhdZ/rrfF | putative amino acid ABC transporter ATPase/5S ribosomal RNA of rrnD operon |
| ? | NC_000913 | = 4213162 | 92 (0.890) | intergenic (+3/‑72) | rrfE/yjaA | 5S ribosomal RNA of rrnE operon/stress‑induced protein | |||||
| * | ? | NC_000913 | = 3607652 | 64 (0.610) | 4 (0.040) | 4/244 | NT | 5.8% | coding (1202/2199 nt) | zntA | zinc, cobalt and lead efflux system |
| ? | NC_000913 | = 3607694 | 69 (0.700) | coding (1244/2199 nt) | zntA | zinc, cobalt and lead efflux system | |||||
| * | ? | NC_000913 | = 3620112 | NA (NA) | 6 (0.060) | 6/248 | NT | 100% | coding (921/4236 nt) | rhsB | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| ? | NC_000913 | = 3620151 | 0 (0.000) | coding (960/4236 nt) | rhsB | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor | |||||
| * | ? | NC_000913 | 3708322 = | NA (NA) | 7 (0.070) | 5/246 | NT | 6.3% | noncoding (51/86 nt) | REP267 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP267 (repetitive extragenic palindromic) element; contains 2 REP sequences |
| ? | NC_000913 | 4245165 = | 104 (1.050) | noncoding (74/126 nt) | REP315 (repetitive extragenic palindromic) element; contains 3 REP sequences | REP315 (repetitive extragenic palindromic) element; contains 3 REP sequences | |||||
| * | ? | NC_000913 | 3711574 = | 93 (0.890) | 175 (1.680) | 111/258 | NT | 49.6% | coding (434/1209 nt) | yhjX | pyruvate‑inducible inner membrane protein, putative transporter |
| ? | NC_000913 | = 3828611 | 264 (2.540) | coding (55/1206 nt) | gltS | glutamate transporter | |||||
| * | ? | NC_000913 | 3721045 = | 311 (2.960) | 134 (1.290) | 99/258 | NT | 40.8% | noncoding (413/1443 nt) | IS150 | repeat region |
| ? | NC_000913 | = 3839774 | 81 (0.780) | coding (220/819 nt) | nlpA | cytoplasmic membrane lipoprotein‑28 | |||||
| * | ? | NC_000913 | 3774236 = | NA (NA) | 7 (0.070) | 6/246 | NT | NA | noncoding (1/99 nt) | RIP271 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP271 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
| ? | NC_000913 | 3774261 = | NA (NA) | noncoding (26/99 nt) | RIP271 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP271 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | |||||
| * | ? | NC_000913 | 3943834 = | 0 (0.000) | 12 (0.120) | 12/246 | NT | 100% | noncoding (131/2904 nt) | rrlC | 23S ribosomal RNA of rrnC operon |
| ? | NC_000913 | 4037667 = | NA (NA) | noncoding (149/2905 nt) | rrlA | 23S ribosomal RNA of rrnA operon | |||||
| * | ? | NC_000913 | = 4056439 | 132 (1.260) | 7 (0.070) | 5/246 | NT | 5.2% | intergenic (‑100/+186) | glnL/glnA | sensory histidine kinase in two‑component regulatory system with GlnG/glutamine synthetase |
| ? | NC_000913 | = 4056445 | 131 (1.320) | intergenic (‑106/+180) | glnL/glnA | sensory histidine kinase in two‑component regulatory system with GlnG/glutamine synthetase | |||||
| * | ? | NC_000913 | 4341707 = | 91 (0.870) | 7 (0.070) | 6/250 | NT | 7.5% | intergenic (‑79/‑204) | melR/melA | melibiose operon transcriptional regulator; autoregulator/alpha‑galactosidase, NAD(P)‑binding |
| ? | NC_000913 | 4341730 = | 84 (0.830) | intergenic (‑102/‑181) | melR/melA | melibiose operon transcriptional regulator; autoregulator/alpha‑galactosidase, NAD(P)‑binding | |||||